TCONS_00058942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058942
Unique NameTCONS_00058942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058942 ID=TCONS_00058942|Name=TCONS_00058942|organism=Clytia hemisphaerica|type=transcript|length=306bp
CTTGTACAACAATGTTTTATTGGTGTTAATAACTTGATTATTAAACTACT
TCAAAggaagttatgaaggttttacACCCACTCCAGCCTTTTAATTAGGT
GTTTAGAAACATACTAGTAATTCTGCTACATNTTTCAAAGGACTGGTAAT
GACAACAAAgtgattttgtttaaaaagtgtATCAGCGCTGTATCAGAAAA
AAGTTCCTTTTTGACATCGTGTCACATAAGAtttttttcctcagatgttt
aatttccaagtgccttcagaggttttcTGTGTGTGTAAGAAAATTATGGC
CATCTG
Run BLAST on NCBI

transcript from alignment at scaffold_314:697567..697872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058942 ID=TCONS_00058942|Name=TCONS_00058942|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_314:697567..697872 (Clytia hemisphaerica)
CAGATGGCCATAATTTTCTTACACACACAgaaaacctctgaaggcacttg
gaaattaaacatctgaggaaaaaaaTCTTATGTGACACGATGTCAAAAAG
GAACTTTTTTCTGATACAGCGCTGATacactttttaaacaaaatcacTTT
GTTGTCATTACCAGTCCTTTGAAANATGTAGCAGAATTACTAGTATGTTT
CTAAACACCTAATTAAAAGGCTGGAGTGGGTgtaaaaccttcataacttc
cTTTGAAGTAGTTTAATAATCAAGTTATTAACACCAATAAAACATTGTTG
TACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037128XLOC_037128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058942-exon-scaffold_314-1491911889:697567..697872TCONS_00058942-exon-scaffold_314-1491911889:697567..697872Clytia hemisphaericaexon
TCONS_00058942-exon-scaffold_314-1510915933:697567..697872TCONS_00058942-exon-scaffold_314-1510915933:697567..697872Clytia hemisphaericaexon
TCONS_00058942-exon-scaffold_314-1575043694:697567..697872TCONS_00058942-exon-scaffold_314-1575043694:697567..697872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:697567..697872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.642754	0	1.19503	0	1.69166	1.78501	1.13732	0.598245	0	0	1.63507	2.03571	1.21532	0	0	0	0	0.306807	0	0	0	0	0	0.459318	0	0	1.31674	2.15823	0	0.98594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top