TCONS_00058940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058940
Unique NameTCONS_00058940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058940 ID=TCONS_00058940|Name=TCONS_00058940|organism=Clytia hemisphaerica|type=transcript|length=326bp
TAAATCTGCTGCACTCCCATGTTTGATTTCATTTCGAAGTTGTCTTGCTC
GATCAACAAAAGCAGCTTTACTTTGATCAGTCAATTTCACTTTCTTCCAA
CCACCTGATGGTTTAAGATTTGTTTCATTGCGAATAACAGCAACGATCAA
TGTTATATCCCAATCCTTTGAGTCTGTTTGCTGTTTGTTCTGAGGACATA
ATTTATCCCATTCATCCTGCTTGAGAATTTTGTGAAGtccatttttagta
ttttgtttGCATGTCAACATATGTTGGTAAAGTTGACCTGGGTTTTGTGG
TAATCCTTGGTAAGAAGGATCGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00058940-protein

>TCONS_00058940-protein ID=TCONS_00058940-protein|Name=TCONS_00058940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
NDPSYQGLPQNPGQLYQHMLTCKQNTKNGLHKILKQDEWDKLCPQNKQQT
DSKDWDITLIVAVIRNETNLKPSGGWKKVKLTDQSKAAFVDRARQLRNEI
KHGSAADL
Run BLAST on NCBI

transcript from alignment at scaffold_314:676713..677038

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058940 ID=TCONS_00058940|Name=TCONS_00058940|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_314:676713..677038 (Clytia hemisphaerica)
ACAACGATCCTTCTTACCAAGGATTACCACAAAACCCAGGTCAACTTTAC
CAACATATGTTGACATGCaaacaaaatactaaaaatggaCTTCACAAAAT
TCTCAAGCAGGATGAATGGGATAAATTATGTCCTCAGAACAAACAGCAAA
CAGACTCAAAGGATTGGGATATAACATTGATCGTTGCTGTTATTCGCAAT
GAAACAAATCTTAAACCATCAGGTGGTTGGAAGAAAGTGAAATTGACTGA
TCAAAGTAAAGCTGCTTTTGTTGATCGAGCAAGACAACTTCGAAATGAAA
TCAAACATGGGAGTGCAGCAGATTTA

Coding sequence (CDS) from alignment at scaffold_314:676713..677038

>TCONS_00058940 ID=TCONS_00058940|Name=TCONS_00058940|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_314:676713..677038 (Clytia hemisphaerica)
AACGATCCTTCTTACCAAGGATTACCACAAAACCCAGGTCAACTTTACCA
ACATATGTTGACATGCaaacaaaatactaaaaatggaCTTCACAAAATTC
TCAAGCAGGATGAATGGGATAAATTATGTCCTCAGAACAAACAGCAAACA
GACTCAAAGGATTGGGATATAACATTGATCGTTGCTGTTATTCGCAATGA
AACAAATCTTAAACCATCAGGTGGTTGGAAGAAAGTGAAATTGACTGATC
AAAGTAAAGCTGCTTTTGTTGATCGAGCAAGACAACTTCGAAATGAAATC
AAACATGGGAGTGCAGCAGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037126XLOC_037126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058940-exon-scaffold_314-1491911889:676713..677038TCONS_00058940-exon-scaffold_314-1491911889:676713..677038Clytia hemisphaericaexon
TCONS_00058940-exon-scaffold_314-1510915933:676713..677038TCONS_00058940-exon-scaffold_314-1510915933:676713..677038Clytia hemisphaericaexon
TCONS_00058940-exon-scaffold_314-1575043694:676713..677038TCONS_00058940-exon-scaffold_314-1575043694:676713..677038Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058940-proteinTCONS_00058940-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:676713..677038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.507573	0.0552221	0	0	0	0	0.364951	0.444407	0	0	0	2.12322	1.34627	1.15747	1.37294	1.1381	0.757415	2.25625	2.91112	0.586325	0.428983	0.13721	0.316071	1.46806	2.16721	0	0.443715	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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