TCONS_00058938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058938
Unique NameTCONS_00058938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058938 ID=TCONS_00058938|Name=TCONS_00058938|organism=Clytia hemisphaerica|type=transcript|length=356bp
ataaaacaacaacaaatcaaCGCAGAAGGACAGTATATTGCTGGAACGTT
AACTTGATAAGATGAATATATCAAAACCACCGAATATTCCAGAATGCTAC
ATAGGATTATTCGAGACATTGGACCTCACAGGCATGCCACCGCCAGTTTC
CGCCGTCTTGGCGCCAATATCAGcgaccaacaaaactatggggCCACAAC
CATCATCAAAAAGTGACAACGACTTGAATAATGATACTTTCGCTTTCATT
ATCGGTCCTTGCTTTGTCGTATTTATCATTTTCTGGAACGTTCTATTAAT
ATGTGGACTTGTTAAAACTCCAGCACGAGAAAGCATCAGTTTGACTAAAA
AACTTT
Run BLAST on NCBI

transcript from alignment at scaffold_314:546596..546951

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058938 ID=TCONS_00058938|Name=TCONS_00058938|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_314:546596..546951 (Clytia hemisphaerica)
AAAGTTTTTTAGTCAAACTGATGCTTTCTCGTGCTGGAGTTTTAACAAGT
CCACATATTAATAGAACGTTCCAGAAAATGATAAATACGACAAAGCAAGG
ACCGATAATGAAAGCGAAAGTATCATTATTCAAGTCGTTGTCACTTTTTG
ATGATGGTTGTGGccccatagttttgttggtcgCTGATATTGGCGCCAAG
ACGGCGGAAACTGGCGGTGGCATGCCTGTGAGGTCCAATGTCTCGAATAA
TCCTATGTAGCATTCTGGAATATTCGGTGGTTTTGATATATTCATCTTAT
CAAGTTAACGTTCCAGCAATATACTGTCCTTCTGCGttgatttgttgttg
ttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037124XLOC_037124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058938-exon-scaffold_314-1491911889:546596..546951TCONS_00058938-exon-scaffold_314-1491911889:546596..546951Clytia hemisphaericaexon
TCONS_00058938-exon-scaffold_314-1510915933:546596..546951TCONS_00058938-exon-scaffold_314-1510915933:546596..546951Clytia hemisphaericaexon
TCONS_00058938-exon-scaffold_314-1575043694:546596..546951TCONS_00058938-exon-scaffold_314-1575043694:546596..546951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:546596..546951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.580974	0.203377	0	0	0.642938	0.321022	0	0	0	0	0.371401	0.769665	2.68466	0	0	0	0.50316	1.55473	1.61882	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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