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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058937 ID=TCONS_00058937|Name=TCONS_00058937|organism=Clytia hemisphaerica|type=transcript|length=749bp
CAAAAAACCATTATCATCCATTTCGTCAAGGAAAGTCTACTTGTTCCTGT
TATTCCAACTGGCAGTTAACATCATTATAGCTGTCCATACTTTCTCTGTG
TATTTTCAGCGTTCAACAGCTTACACACTATCCGTCAATTTCTTCATATT
ATTTTCCTGCTTATTGACATATTGTGTGGTTCTTGTTATTGTCAACATCA
AATCTTCACTACTCCTCAAACAAATCGCCCTAATGAGATCCAGCCCTTAC
GATTCCCAAGACAACGTTATGCACTTGAAGGTTATATCTACACTACACAT
TATCACTTTTTGTTTCGTCGTTTGTCTCATGCCTTATGCATTTTACGCAC
TTTTCCTTGGGGCTTACTTACAACGTGGAGATGCAAGACTGGCTAATTAT
TTTGGATACTTAAAAAACTTTATGCCTTTCCATATATTGTATTTACTAAA
CAGTGGCCTCACTGCCGCAGTATATGTCATCAAAATGGGCGTGGCCAAAC
AGCTCTGGCAAAGGCGGACCAATGCACCATTGGAAGGAACTTCGAGTGAT
TACAGTTCAACAACATTCGCCAATCAAAATATTCCACTTAGTGTTATTTC
CACTAAGAATTTACAAGACACATCTTCCAAGCTAAACAATGCAAGCAACT
TGTAAGAAATAAGATTCCAGTTACATTATGCCACCGTCATTTCTATTTTG
TGCTTAGTTGTAGGAGGGGGTCACTTTccaatttttcggaaaaaatcac Run BLAST on NCBI protein sequence of TCONS_00058937-protein >TCONS_00058937-protein ID=TCONS_00058937-protein|Name=TCONS_00058937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
KKPLSSISSRKVYLFLLFQLAVNIIIAVHTFSVYFQRSTAYTLSVNFFIL
FSCLLTYCVVLVIVNIKSSLLLKQIALMRSSPYDSQDNVMHLKVISTLHI
ITFCFVVCLMPYAFYALFLGAYLQRGDARLANYFGYLKNFMPFHILYLLN
SGLTAAVYVIKMGVAKQLWQRRTNAPLEGTSSDYSSTTFANQNIPLSVIS
TKNLQDTSSKLNNASNL Run BLAST on NCBI transcript from alignment at scaffold_314:545663..546411 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058937 ID=TCONS_00058937|Name=TCONS_00058937|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_314:545663..546411 (Clytia hemisphaerica)
gtgattttttccgaaaaattggAAAGTGACCCCCTCCTACAACTAAGCAC
AAAATAGAAATGACGGTGGCATAATGTAACTGGAATCTTATTTCTTACAA
GTTGCTTGCATTGTTTAGCTTGGAAGATGTGTCTTGTAAATTCTTAGTGG
AAATAACACTAAGTGGAATATTTTGATTGGCGAATGTTGTTGAACTGTAA
TCACTCGAAGTTCCTTCCAATGGTGCATTGGTCCGCCTTTGCCAGAGCTG
TTTGGCCACGCCCATTTTGATGACATATACTGCGGCAGTGAGGCCACTGT
TTAGTAAATACAATATATGGAAAGGCATAAAGTTTTTTAAGTATCCAAAA
TAATTAGCCAGTCTTGCATCTCCACGTTGTAAGTAAGCCCCAAGGAAAAG
TGCGTAAAATGCATAAGGCATGAGACAAACGACGAAACAAAAAGTGATAA
TGTGTAGTGTAGATATAACCTTCAAGTGCATAACGTTGTCTTGGGAATCG
TAAGGGCTGGATCTCATTAGGGCGATTTGTTTGAGGAGTAGTGAAGATTT
GATGTTGACAATAACAAGAACCACACAATATGTCAATAAGCAGGAAAATA
ATATGAAGAAATTGACGGATAGTGTGTAAGCTGTTGAACGCTGAAAATAC
ACAGAGAAAGTATGGACAGCTATAATGATGTTAACTGCCAGTTGGAATAA
CAGGAACAAGTAGACTTTCCTTGACGAAATGGATGATAATGGTTTTTTG Coding sequence (CDS) from alignment at scaffold_314:545663..546411 >TCONS_00058937 ID=TCONS_00058937|Name=TCONS_00058937|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_314:545663..546411 (Clytia hemisphaerica)
TTACAAGTTGCTTGCATTGTTTAGCTTGGAAGATGTGTCTTGTAAATTCT
TAGTGGAAATAACACTAAGTGGAATATTTTGATTGGCGAATGTTGTTGAA
CTGTAATCACTCGAAGTTCCTTCCAATGGTGCATTGGTCCGCCTTTGCCA
GAGCTGTTTGGCCACGCCCATTTTGATGACATATACTGCGGCAGTGAGGC
CACTGTTTAGTAAATACAATATATGGAAAGGCATAAAGTTTTTTAAGTAT
CCAAAATAATTAGCCAGTCTTGCATCTCCACGTTGTAAGTAAGCCCCAAG
GAAAAGTGCGTAAAATGCATAAGGCATGAGACAAACGACGAAACAAAAAG
TGATAATGTGTAGTGTAGATATAACCTTCAAGTGCATAACGTTGTCTTGG
GAATCGTAAGGGCTGGATCTCATTAGGGCGATTTGTTTGAGGAGTAGTGA
AGATTTGATGTTGACAATAACAAGAACCACACAATATGTCAATAAGCAGG
AAAATAATATGAAGAAATTGACGGATAGTGTGTAAGCTGTTGAACGCTGA
AAATACACAGAGAAAGTATGGACAGCTATAATGATGTTAACTGCCAGTTG
GAATAACAGGAACAAGTAGACTTTCCTTGACGAAATGGATGATAATGGTT
TTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058937-exon-scaffold_314-1491911889:545663..546411 | TCONS_00058937-exon-scaffold_314-1491911889:545663..546411 | Clytia hemisphaerica | exon |
| TCONS_00058937-exon-scaffold_314-1510915933:545663..546411 | TCONS_00058937-exon-scaffold_314-1510915933:545663..546411 | Clytia hemisphaerica | exon |
| TCONS_00058937-exon-scaffold_314-1575043694:545663..546411 | TCONS_00058937-exon-scaffold_314-1575043694:545663..546411 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:545663..546411 . |
Blast
The following BLAST results are available for this feature:
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