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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058935 ID=TCONS_00058935|Name=TCONS_00058935|organism=Clytia hemisphaerica|type=transcript|length=2096bp
ggaaaaaaaagtaaaaattacaAGACTATACACTATCATCCGAtgattga
atgttttttttttttttgaagagagAGACGAATGAGGGAggatcaaaaaa
ggaaaaacaaggCTTGATCATACAAAATCCTTTACAATCTCTCAATGGTG
TTGACACACATCACTTTATCCAAACAGATAATCTCTCATCATCCAAAGaa
tcaagaagaaaaacaagccaAACGTTTAAATCCCGTTTAGACTCCTATTT
CTATATTGTTTTATTAATCCGagacaaaaacattaaaaaaaaagtgattg
TATAGGATAAAAATCATGTTGAAATCAGCACAAAGTTTAGCTATCGGAGT
AGCTGGAGCAACCGGCGCTGGTGGAAAGGGGAAACACAAGCGTGCGCAAT
CTAAAAGATCCATCACTAGGCAACCGACCACAAAACAAATCAATGCTTTG
ATTGAACAGAACAACATGTCGAGCACGGGCGGTGCCACCCAAGCCGGCGG
ACCACCGCCCATGGATTTCCAGAATAGCACTTACACTTTCGGAGGTGNtt
tttttttttgaagagagAGACGAATGAGGGAggatcaaaaaaggaaaaac
aagaCTTGATCATACAAAATCCTTTACAATCTCTCAATGGTGTTGACACA
CATCACTTTATCCAAACAGATAATCTCTCATCATCCAAAGaattaagaag
aaaaacaagccaAACGTTTAAATCCCGTTTAGACTCCTTTTTCTATATTG
TTTTATTAATCCGagacaaaaacattaaaaaaaagtgattGCATAGGATA
AAAATCATGTTGAAATCAGCACAAAGTTTAGCTATCGGAGTAGCTGGAGC
AACCGGCGCTGGTGGAAAGGGGAAACACAAGCGTGCGCAATCTAAAAGAT
CCATCACTAGGCAACCGACCACAAAACAAATCAATGCTTTGATTGAACAG
AACAACATGTCGAGCACGGGCGGTGCCACCCAAGCCGGCGGACCACCGCC
CATGGATTTCCAGAATAGCACTTACACTTTCGGAGGTGTGACATATCAAT
ATCAAGGTGGACCCAAACCTGATTATAAGAATAACAAGAAAAATGGGAAA
GATTTCGATCCTTTTTACGACCGTGGTAAATTACGCACCAAACGTGTCAA
GAATAATATGGGAACGGAAGAATTTGAGCGACGTTCCAGTGCCGTGCATG
GAATGCTGAAGTGCATTGCAGCACCGGTGTTGAATAAAGAAGTCGCGCCT
GCATTTAGGTACAAGAGCACCAAATTGTTTGAATTAGCTTTGGAATGCTA
CAATCGAAGAGGTGTAGCTGATATACACGAGgagaaagaaaattataaac
atGACGAGGACCCTGTCTCGTGGACATGTCGTTGGCACTGGTTGACCAAA
GGACGCGTCAGGGCCGGACAACAATTATGCATCCAGTGTCGTGATTTAGG
CAAACCAAGAGGTTTTATGGAACAGTATTATTTGAATAGTGTTGAGATTG
CACGCtcaagaacaattttatgtCAAAACTGCATGAGTTTGAAGTTGCGA
AAAGAAGTGGGAGAAAACGAGGAGAAAATTTGCCAAGAATTAATGAGACT
TCGAAAGAAACAAAACCTAATCAATAGTTGATTATTTAATAAGTccaaat
aaaagtgaaatcaaaacattgcttgaaacttttttactcaTACGATATAT
GAGATCGCAGTGATGGAAAACATTCAAATATGGACCAATGAAAATCAATG
TGGTTTATCAAGAACTGTAAACCATCAAGATTAAATACAATCccaaaatt
tccagaaaatcaGCCCTGAAGAATGTCATGGTTATTTTCcaattaaaata
taaaattttattgtGTACGAAAACCGCGAAGAATGACTAACTGTAATAGA
ATCCATAAAAGATGAATCATTTGTAAATATTTGAGCTGGGTTGTATGGTA
GTAGacgtttctttttataataacgTACAAAGTTTTCAAAGCTTTTGGAT
GTGAATGTGcttgactttttgagttttaaacctaataATATACTTTAAat
cttcttattttcaacattttgtgagtatACCCCCTACTCTACATCC Run BLAST on NCBI protein sequence of TCONS_00058935-protein >TCONS_00058935-protein ID=TCONS_00058935-protein|Name=TCONS_00058935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MLKSAQSLAIGVAGATGAGGKGKHKRAQSKRSITRQPTTKQINALIEQNN
MSSTGGATQAGGPPPMDFQNSTYTFGGVTYQYQGGPKPDYKNNKKNGKDF
DPFYDRGKLRTKRVKNNMGTEEFERRSSAVHGMLKCIAAPVLNKEVAPAF
RYKSTKLFELALECYNRRGVADIHEEKENYKHDEDPVSWTCRWHWLTKGR
VRAGQQLCIQCRDLGKPRGFMEQYYLNSVEIARSRTILCQNCMSLKLRKE
VGENEEKICQELMRLRKKQNLINS Run BLAST on NCBI transcript from alignment at scaffold_314:537317..539412 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058935 ID=TCONS_00058935|Name=TCONS_00058935|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at scaffold_314:537317..539412 (Clytia hemisphaerica)
GGATGTAGAGTAGGGGGTatactcacaaaatgttgaaaataagaagatTT
AAAGTATATtattaggtttaaaactcaaaaagtcaagCACATTCACATCC
AAAAGCTTTGAAAACTTTGTAcgttattataaaaagaaacgtCTACTACC
ATACAACCCAGCTCAAATATTTACAAATGATTCATCTTTTATGGATTCTA
TTACAGTTAGTCATTCTTCGCGGTTTTCGTACacaataaaattttatatt
ttaattgGAAAATAACCATGACATTCTTCAGGGCtgattttctggaaatt
ttggGATTGTATTTAATCTTGATGGTTTACAGTTCTTGATAAACCACATT
GATTTTCATTGGTCCATATTTGAATGTTTTCCATCACTGCGATCTCATAT
ATCGTAtgagtaaaaaagtttcaagcaatgttttgatttcacttttattt
ggACTTATTAAATAATCAACTATTGATTAGGTTTTGTTTCTTTCGAAGTC
TCATTAATTCTTGGCAAATTTTCTCCTCGTTTTCTCCCACTTCTTTTCGC
AACTTCAAACTCATGCAGTTTTGacataaaattgttcttgaGCGTGCAAT
CTCAACACTATTCAAATAATACTGTTCCATAAAACCTCTTGGTTTGCCTA
AATCACGACACTGGATGCATAATTGTTGTCCGGCCCTGACGCGTCCTTTG
GTCAACCAGTGCCAACGACATGTCCACGAGACAGGGTCCTCGTCatgttt
ataattttctttctcCTCGTGTATATCAGCTACACCTCTTCGATTGTAGC
ATTCCAAAGCTAATTCAAACAATTTGGTGCTCTTGTACCTAAATGCAGGC
GCGACTTCTTTATTCAACACCGGTGCTGCAATGCACTTCAGCATTCCATG
CACGGCACTGGAACGTCGCTCAAATTCTTCCGTTCCCATATTATTCTTGA
CACGTTTGGTGCGTAATTTACCACGGTCGTAAAAAGGATCGAAATCTTTC
CCATTTTTCTTGTTATTCTTATAATCAGGTTTGGGTCCACCTTGATATTG
ATATGTCACACCTCCGAAAGTGTAAGTGCTATTCTGGAAATCCATGGGCG
GTGGTCCGCCGGCTTGGGTGGCACCGCCCGTGCTCGACATGTTGTTCTGT
TCAATCAAAGCATTGATTTGTTTTGTGGTCGGTTGCCTAGTGATGGATCT
TTTAGATTGCGCACGCTTGTGTTTCCCCTTTCCACCAGCGCCGGTTGCTC
CAGCTACTCCGATAGCTAAACTTTGTGCTGATTTCAACATGATTTTTATC
CTATGCaatcacttttttttaatgtttttgtctCGGATTAATAAAACAAT
ATAGAAAAAGGAGTCTAAACGGGATTTAAACGTTtggcttgtttttcttc
ttaattCTTTGGATGATGAGAGATTATCTGTTTGGATAAAGTGATGTGTG
TCAACACCATTGAGAGATTGTAAAGGATTTTGTATGATCAAGtcttgttt
ttccttttttgatccTCCCTCATTCGTCTctctcttcaaaaaaaaaaaNC
ACCTCCGAAAGTGTAAGTGCTATTCTGGAAATCCATGGGCGGTGGTCCGC
CGGCTTGGGTGGCACCGCCCGTGCTCGACATGTTGTTCTGTTCAATCAAA
GCATTGATTTGTTTTGTGGTCGGTTGCCTAGTGATGGATCTTTTAGATTG
CGCACGCTTGTGTTTCCCCTTTCCACCAGCGCCGGTTGCTCCAGCTACTC
CGATAGCTAAACTTTGTGCTGATTTCAACATGATTTTTATCCTATAcaat
cactttttttttaatgtttttgtctCGGATTAATAAAACAATATAGAAAT
AGGAGTCTAAACGGGATTTAAACGTTtggcttgtttttcttcttgattCT
TTGGATGATGAGAGATTATCTGTTTGGATAAAGTGATGTGTGTCAACACC
ATTGAGAGATTGTAAAGGATTTTGTATGATCAAGccttgtttttcctttt
ttgatccTCCCTCATTCGTCTctctcttcaaaaaaaaaaaaaacattcaa
tcaTCGGATGATAGTGTATAGTCTtgtaatttttacttttttttcc Coding sequence (CDS) from alignment at scaffold_314:537317..539412 >TCONS_00058935 ID=TCONS_00058935|Name=TCONS_00058935|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_314:537317..539412 (Clytia hemisphaerica)
TCAACTATTGATTAGGTTTTGTTTCTTTCGAAGTCTCATTAATTCTTGGC
AAATTTTCTCCTCGTTTTCTCCCACTTCTTTTCGCAACTTCAAACTCATG
CAGTTTTGacataaaattgttcttgaGCGTGCAATCTCAACACTATTCAA
ATAATACTGTTCCATAAAACCTCTTGGTTTGCCTAAATCACGACACTGGA
TGCATAATTGTTGTCCGGCCCTGACGCGTCCTTTGGTCAACCAGTGCCAA
CGACATGTCCACGAGACAGGGTCCTCGTCatgtttataattttctttctc
CTCGTGTATATCAGCTACACCTCTTCGATTGTAGCATTCCAAAGCTAATT
CAAACAATTTGGTGCTCTTGTACCTAAATGCAGGCGCGACTTCTTTATTC
AACACCGGTGCTGCAATGCACTTCAGCATTCCATGCACGGCACTGGAACG
TCGCTCAAATTCTTCCGTTCCCATATTATTCTTGACACGTTTGGTGCGTA
ATTTACCACGGTCGTAAAAAGGATCGAAATCTTTCCCATTTTTCTTGTTA
TTCTTATAATCAGGTTTGGGTCCACCTTGATATTGATATGTCACACCTCC
GAAAGTGTAAGTGCTATTCTGGAAATCCATGGGCGGTGGTCCGCCGGCTT
GGGTGGCACCGCCCGTGCTCGACATGTTGTTCTGTTCAATCAAAGCATTG
ATTTGTTTTGTGGTCGGTTGCCTAGTGATGGATCTTTTAGATTGCGCACG
CTTGTGTTTCCCCTTTCCACCAGCGCCGGTTGCTCCAGCTACTCCGATAG
CTAAACTTTGTGCTGATTTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058935-exon-scaffold_314-1491911889:537317..539412 | TCONS_00058935-exon-scaffold_314-1491911889:537317..539412 | Clytia hemisphaerica | exon |
| TCONS_00058935-exon-scaffold_314-1510915933:537317..539412 | TCONS_00058935-exon-scaffold_314-1510915933:537317..539412 | Clytia hemisphaerica | exon |
| TCONS_00058935-exon-scaffold_314-1575043694:537317..539412 | TCONS_00058935-exon-scaffold_314-1575043694:537317..539412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:537317..539412 . |
Blast
The following BLAST results are available for this feature:
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