TCONS_00058913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058913
Unique NameTCONS_00058913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058913 ID=TCONS_00058913|Name=TCONS_00058913|organism=Clytia hemisphaerica|type=transcript|length=1619bp
TACTCTTAGACcactaaaaaaaactaaaaaagtgaTATAAATAAAATGAC
AAGTACAACTGAGGATTTGACAGATTTTATTGACGACTTTATGAGTAAGG
ATAAGAATGCCAATATCCAGACAACTACACAAGATCAAGAAGTTGGTGTT
GATGAAGATTTAATTCACATTGAGAAAGTGGAAACTGTGGAAGCCACACC
CTTCTTTCCAGATACTGTTGAGCTTTCACCTGATTCTCAAGAAGATATTT
TGAATGGAGAAGATTTCAAATATGCAGTTGAACGTCAACTTTCGGAGAGT
GGTAAAATCACTAGTATTGATTATGAGGTTGACGGAAATAAAATCATGAT
TCAAGAACTCAAAAGTTCTGTGGTTTCTCTCAAAGTTTCAACATCTCGGA
TTGAAAGAGAAGTGAAAGAATTGTCGGACATTGTTGGCAAATTCAATACC
GacaGACAAACATTGGATAATTCGTTGGTAGATTTAGAGTTTCGTTTCAA
CGAATTGGTCACGCACGAGGATGGGGATCTGGGAACCAGGAGAGAAACAA
CAAACACTTCTAATaatgaagaaagtgaaaagaatgCAGATTTCCAAAAA
CATATAGTGACTCTAATTGAACGATTGGAAATTAAAGTCAAATTGATGGA
CGAAAAGATCTGCACTATTGATCAGCAAAATGCAAAGGTGAAATCTTTAT
CAGAAGAAATTTTAAGACATGAGAAAATTGtcgaagatttgaaaaaaatg
ctgaCCCAGCAAGCAGACGAACTTACGAGAATCAACTCTCAGAAAGCACA
ACAAGTCACCACCAAAGTGAGTGAACAAAAAACCACAACAACGGAAAACA
TTAAACCGTCATACGCAGCATCGTCCCCATCTAGTAACTTCGTCGCTTTA
CAATCATCAGTCAATGAATTCATTGCTAAAACAGAACTTAATGAGCGTAG
CATTGCCACAGCTTGGGTAGGACTTGTTGGTGCGTTGCTGTTGATTCCCA
TGGCATGGATCATGGGAAAATTCTTCTAAATAATTCAACATGGAGATGTT
GAGGATGTCAGCATCCTTCCGATTTGTTACACCAAAAACTCTTTCAGGTA
TGTGCAACCTAGGAGACGTGAAGTCATTACCAGAATGAGTACTGTTTACC
GTTATTCCATCATCTATTAAAATGGCagaatatatttgaaaaatcaaaac
ttagaaaacgccGGAGATTGGTTCCCGTCGAACTGGCCACTGGTTCGTTT
TTGTTGGCTTCTCAGCGTTTCGTCCGTTTACTTTTAGCAAGACgagtttt
gttgattttgtttttatttttagtcaATAAACATTGGACTGACCAAAGAT
ACCATTGCAGATCTAATTAACTCTCAAAGAATTATTATCATTTGATCAAT
TATTGgtcaaaattatttattttagattttagaaATATATTAGTTTATTG
TGACCTGAAAATATTATACATAATATATTTGTCGATTGTTCTTAACGTGT
ATTTATTTTAGAAGAGCGTGTTATATTGTTTTTAAGTATAGATATTTATA
TTTCTTGTTCATGATGATATTTAAAGAAAGTTCTGTTACATTAACATTTA
ACATCTACTAGTCTACTTA
Run BLAST on NCBI

transcript from alignment at scaffold_314:717830..721333-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058913 ID=TCONS_00058913|Name=TCONS_00058913|organism=Clytia hemisphaerica|type=transcript|length=3504bp|location=Sequence derived from alignment at scaffold_314:717830..721333- (Clytia hemisphaerica)
TACTCTTAGACCACTAAAAAAAACTAAAAAAGTGATATAAATAAAATGAC
AAGTACAACTGAGGATTTGACAGATTTTATTGACGACTTTATGAGTAAGG
ATAAGAATGCCAATATCCAGACAACTACACAAGATCAAGAAGTTGGTGTT
GATGAAGATTTAATTCACATTGAGAAAGTGGAAACTGTGGAAGCCACACC
CTTCTTTCCAGATACTGTTGAGCTTTCACCTGATTCTCAAGAAGGTCAGT
CTAGATATTGATTTTCCTACTATACCATTCAGAAGATTTACAGAACTCCA
TATGAGAGGTTAAGTAGCCCCCTTTTTTATTTTTTTGCTGAATTATTTTT
CTCTGGTTTGTCATTATGATGAGTTTGTCTTCTCAGAGCCAGTTGGTCTA
TTCTCTTATTTTCTTCAGCAAAAGAAATAATATACCATCTTACAACATTT
TTTCTTTAGCAACCTTTATAATATGCCATCCTTGAAAAATAATATTATAA
GATAGAAATCTCACTGGAGAAAAACTTTTCTACTGTGTACTCAGACCTTC
CATAATTCATCAAATGATGTTATTTCCAGATATTTTGAATGGAGAAGATT
TCAAATATGCAGTTGAACGTCAACTTTCGGAGAGTGGTAAAATCACTAGT
ATTGATTATGAGGTTGACGGAAATAAAATCATGATTCAAGAACTCAAAAG
TTCTGTGGTTTCTCTCAAAGTTTCAACATCTCGGATTGAAAGAGAAGTGA
AAGAATTGTCGGACATTGTTGGCAAATTCAATACCGGTATTCCCCTCCGT
TATTTAAACACACTTATCGGCAATCCAAAAACGTATTTAGATAAAATATT
GAGAATTTAGTTGGACAGTATTTATGCGTGGAGCTGGGTAGGGTAGTCTT
CGGTAAATATATTATTTATTTTAGAAATTGAAACCGTAAAAAGCACAACT
ACTATTAATTTCACGTAAAATTTCACAATGTTAGAATGTAGATTGGAGGT
ATTGGAACTCAACTACATTACGATGCAGCTTCCTAGTTTTGTTCGTATCA
AAGATTGGAAATTTCGTATGAACTAGATTTCTTAACTGTGTCATAAATAT
TTCACACCTTTGACTTTGAATTAGTTTTGACATTTTATATCAAATTGAAC
ACGAGATAGATCTACTTTGTCTTTCTCAAACACGGTAGTTAAAGCGAAAT
AATGCGTCATCTTTGCTGAGTACACCACAGTGGTAGAGCACTATTCGGTA
CCGGCAATTTGCTCAATATGAACAAACAACTGACACGGTAGGAAAGGAGG
ATACGAAAAATTGGTCTTGATCAATCAAATTGCCGGCACCGAATTGTTGT
CTACTTTTAAAGATGTTGCAAATTTTGTATCAGCCAGGGATGGAAAAGCT
CTATCTAGCGTTTCTTTATCAGTCATTGTACAGAAAGAAACACGGGTGTG
TCGTTCGACGTTTCGACGGTTGTCTTTATCCTATCAAGTGTTTTATATTA
GATCTATGTGGTTTTGGCTTGAGTATAGTATGAATAATAAATTTTCTTTA
TTTTTATCAAATTTTCAGACAGACAAACATTGGATAATTCGTTGGTAGAT
TTAGAGTTTCGTTTCAACGAATTGGTCACGCACGAGGATGGGGATCTGGG
AACCAGGAGAGAAACAACAAACACTTCTAATAATGAAGAAAGTGAAAAGA
ATGCAGATTTCCAAAAACATATAGTGACTCTAATTGAACGATTGGAAATT
AAAGTCAAATTGATGGACGAAAAGATCTGCACTATTGGTATGATTTGTTT
TTTCAATTCTCTTTTCTTTGTTTAGCTTTTGTTTATTTTGTTCTCTCTAT
TATGACGTGGAGAATCGTTGTTCGAGTTGACGAAGAATATTATAAAGATG
ATATTACAGCACTAAGATTAATTGTAAAAGAATTTTAACTAAGATTTTGA
AAGATAGGAAAATAGGTAAATTCTACGCTGACAAGAAATTTCGATTCTTT
GGTATTTTTTACCAAAGGCTGGTTTTGTTTTTAACTTCTTTGTTATGATA
TGGTTTCAGATCAGCAAAATGCAAAGGTGAAATCTTTATCAGAAGAAATT
TTAAGACATGAGAAAATTGTCGAAGATTTGAAAAAAATGCTGACCCAGCA
AGCAGACGAACTTACGAGAATCAACTCTCAGAAAGCACAACAAGGTAATA
TGAATCAGAAACCTTATCTGTTAAAAGACCTAGATAGGGAGAACATTCTC
AATGCTATTTGTTGCTACTATTTACTTTGTTGCTTTTATCTGACAGTAAA
ACTAGCGAGAACCTCAATACACCTTTCCCAAGTTTTTTTCGACCTCTCCA
GTTTGAAACGAGAACTTGATACTTTTGAAGCTTTTGGTGATACAAAGTCA
TTCTGAAAATATGAGCTTTTTTTGTTGGTTTTGTCGTAGTAGAATCTTTC
TAAATTTGAATGCAAGTAGAGCAGGGTTTTGGAATAGTGTTTTTCAAAAA
GTCGAAATAAACTCGGGAAAGGTGTATTTGTGCCGGAAAAGTTATTGTAA
GATTGGTGTAAATATGGCTGTGAAACCAGTGAATATGAAATATATTTGAA
ATAAAACTCTCTGTTTGTCGGTCATGGGAGTTACGAGGCCTTATGTGAAG
TGAGACGTTTAGAAATAAACTTTATCTGTTTTTTATACAGTCACCACCAA
AGTGAGTGAACAAAAAACCACAACAACGGAAAACATTAAACCGTCATACG
CAGCATCGTCCCCATCTAGTAACTTCGTCGCTTTACAATCATCAGTCAAT
GAATTCATTGCTAAAACAGAACTTAATGAGCGTAGCATTGCCACAGCTTG
GGTAGGACTTGTTGGTGCGTTGCTGTTGATTCCCATGGCATGGATCATGG
GAAAATTCTTCTAAATAATTCAACATGGAGATGTTGAGGATGTCAGCATC
CTTCCGATTTGTTACACCAAAAACTCTTTCAGGTATGTGCAACCTAGGAG
ACGTGAAGTCATTACCAGAATGAGTACTGTTTACCGTTATTCCATCATCT
ATTAAAATGGCAGAATATATTTGAAAAATCAAAACTTAGAAAACGCCGGA
GATTGGTTCCCGTCGAACTGGCCACTGGTTCGTTTTTGTTGGCTTCTCAG
CGTTTCGTCCGTTTACTTTTAGCAAGACGAGTTTTGTTGATTTTGTTTTT
ATTTTTAGTCAATAAACATTGGACTGACCAAAGATACCATTGCAGATCTA
ATTAACTCTCAAAGAATTATTATCATTTGATCAATTATTGGTCAAAATTA
TTTATTTTAGATTTTAGAAATATATTAGTTTATTGTGACCTGAAAATATT
ATACATAATATATTTGTCGATTGTTCTTAACGTGTATTTATTTTAGAAGA
GCGTGTTATATTGTTTTTAAGTATAGATATTTATATTTCTTGTTCATGAT
GATATTTAAAGAAAGTTCTGTTACATTAACATTTAACATCTACTAGTCTA
CTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037100XLOC_037100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058913-exon-scaffold_314-1575043694:721090..721333TCONS_00058913-exon-scaffold_314-1575043694:721090..721333Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1575043694:720548..720754TCONS_00058913-exon-scaffold_314-1575043694:720548..720754Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1575043694:719547..719765TCONS_00058913-exon-scaffold_314-1575043694:719547..719765Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1575043694:719140..719274TCONS_00058913-exon-scaffold_314-1575043694:719140..719274Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1575043694:717830..718643TCONS_00058913-exon-scaffold_314-1575043694:717830..718643Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1510915933:721090..721333TCONS_00058913-exon-scaffold_314-1510915933:721090..721333Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1510915933:720548..720754TCONS_00058913-exon-scaffold_314-1510915933:720548..720754Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1510915933:719547..719765TCONS_00058913-exon-scaffold_314-1510915933:719547..719765Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1510915933:719140..719274TCONS_00058913-exon-scaffold_314-1510915933:719140..719274Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1510915933:717830..718643TCONS_00058913-exon-scaffold_314-1510915933:717830..718643Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1491911889:721090..721333TCONS_00058913-exon-scaffold_314-1491911889:721090..721333Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1491911889:720548..720754TCONS_00058913-exon-scaffold_314-1491911889:720548..720754Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1491911889:719547..719765TCONS_00058913-exon-scaffold_314-1491911889:719547..719765Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1491911889:719140..719274TCONS_00058913-exon-scaffold_314-1491911889:719140..719274Clytia hemisphaericaexon
TCONS_00058913-exon-scaffold_314-1491911889:717830..718643TCONS_00058913-exon-scaffold_314-1491911889:717830..718643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:717830..721333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.80653	7.89671	2.50705	0.680516	5.63266	5.36266	16.8879	20.2908	19.2838	16.4672	14.3265	15.8023	10.0405	8.41123	6.81516	7.86569	23.6297	27.5109	12.9189	15.31	27.5571	26.948	20.3266	23.0549	33.0975	36.4403	9.5569	7.19202	9.52897	10.7682
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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