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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058891 ID=TCONS_00058891|Name=TCONS_00058891|organism=Clytia hemisphaerica|type=transcript|length=1726bp
TTTTTGCTTTTCATGATAGACCTTTCCTTGTTCATCTAATTTGAAACAGT
GCACAAATCAATTTAGTGAATGgatataccGATGATGAGATTATTACAAA
TATTGAGGAAAGGAAAAAGCAAAATACCAGGAACTTTTCTTTTCACCAGT
TCGATTCGATGGAAATCTTATCAAGCTCTTCGAAATGCATTATCTGCTGA
AGAAATTTATTCAGAGCTGATTAAAGGTAACAGAGGAGCTTTAGCTAAAG
GTATTACTTTAACAGAATCGACAAGACAGGATCACATTGATGAAGCCCAT
AAACTTTTACATTTAACTTTGGAGTATTTAAAGAATAAACAAACTGAGAA
ACCAACTTTTCGCATTGGACTAACCGGTTCGCCTGGTGCTGGGAAAAGTA
CCTTAATTGAAACTCTTGGAAAACAATTAACTTCGTTGGGTCATAAAGTT
GCTGTTTTGGCTGTCGATCCTTCTTCTGCCAAAACAGGTGGATCGCTGCT
TGGTGATCGAACTCGAATGGTCGAACTTTCTCATGACCCAAATGCTTTTA
TACGACCTTCCCCCTCGTCAGGGACTTTAGGTGGTGTCACAAGGAGAACA
AATGAAGCTATTGTTTTATGTGAAGGCGCCGGTTATGACATTATTCTTGT
CGAGACAGTTGGCATCGGACAATCTGAATTTGCTGTTTCGAACATGACGg
atatgtttgttttgattatacCTCCTGGTTCAGGGGACGAGTTACAAGGG
ATTAAGAAAGGTGTTGTTGAGATGGCTgacttagttcttataaacaaaGC
AGATGGAGATTTATTACCAGCCGCTAGAAAAGTTCAAACTGAATATATGA
GTGCTTTGAAAGTATTACAAAGACCAGGTGCTAAATGGACTCCTAAGGTT
TATCCAGTTTCAGCTCTTCATAATGAGGGTCTTGATAAAGCTTGGTGGAA
AATAGAACAGTATAAAAGCAAAATGTTAGAAGATGaaacttttcttcaaa
gaaGAAAACACCAATATAAATCATGGATGTGGAATTATGTTCAAGACAAT
ATCATGGAACGATTTCTATCCAATGAGAAAGTTAAAAATCGTATCAAGCA
TTTTGAGATACTGGTTGAAAATGAACAGGTTCATCCCGCATTTGCTGCTG
ATGAACTGTTGAAGATTTTtacaaatgaaaattaattattttatttttag
atttcaaataGCAAAGATTATCGAGAGTGTGATTGCCGAGGGTTTtgttc
aaacttcttttccgtAAATAGTTTCAATGACATCTAACTTCCTAGTTTGT
ATTTCAACATAACGTAATTATTTCCTTCCCAATTGGTTAAAAACGCATTT
TTGACGAGGAACCTTCCTTGTCTGTATCACTCAGATGAGAtgtgttttta
taagatactttaataattggtcatttgaagtaataaaaatgacgcgttct
ttagaaaaagtaacaaaattgttttattactggttaacgaccaaacaagt
caaataagagcttgtaaaaactacgTCTCGTCCCGTATCACTCGACCCTA
CACATCATTTTATTCGTGGTAACATAAAGCACAACTTATTGtaactaaaa
attttaaatgttaaTTTTCTTGTATAGTTTtataaaaagctttttaattt
tgatattgttttcatatctttagaatatTTTACCTAGAGTTTTCTTTGAG
AGTTAAAAacgaaatatttcttttca Run BLAST on NCBI protein sequence of TCONS_00058891-protein >TCONS_00058891-protein ID=TCONS_00058891-protein|Name=TCONS_00058891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MDIPMMRLLQILRKGKSKIPGTFLFTSSIRWKSYQALRNALSAEEIYSEL
IKGNRGALAKGITLTESTRQDHIDEAHKLLHLTLEYLKNKQTEKPTFRIG
LTGSPGAGKSTLIETLGKQLTSLGHKVAVLAVDPSSAKTGGSLLGDRTRM
VELSHDPNAFIRPSPSSGTLGGVTRRTNEAIVLCEGAGYDIILVETVGIG
QSEFAVSNMTDMFVLIIPPGSGDELQGIKKGVVEMADLVLINKADGDLLP
AARKVQTEYMSALKVLQRPGAKWTPKVYPVSALHNEGLDKAWWKIEQYKS
KMLEDETFLQRRKHQYKSWMWNYVQDNIMERFLSNEKVKNRIKHFEILVE
NEQVHPAFAADELLKIFTNEN Run BLAST on NCBI transcript from alignment at scaffold_314:437193..441117- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058891 ID=TCONS_00058891|Name=TCONS_00058891|organism=Clytia hemisphaerica|type=transcript|length=3925bp|location=Sequence derived from alignment at scaffold_314:437193..441117- (Clytia hemisphaerica)
TTTTTGCTTTTCATGATAGACCTTTCCTTGTTCATCTAATTTGAAACAGT
GCACAAATCAATTTAGTGAATGGATATACCGTAAGTTGGTCTAATAACTA
ATATCGACCGACACATCCCTCCTCTAACTTGTCGGGGTGAGCATTTGCAT
GGGGTATTCGTCACCCAGTGTAAATGAGATAGGACATCTCAGGCTAAAAG
CGTGAAAATGAAGAAAACTGGGAACTTTATTTTTTCGTTAAAAGTTTCTT
CAATCTTCGAAGACAAAATTGACCCATGAAAAAAAAAATAGACCTTTTTT
TAAAGAGGCAGCCATGTTGAATAATTATGTACTCCAGCATAAAAACAATG
ATACAGCCATGTATAATTTTTAAAATATGCATGATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCATGATACAATA
ATTATGCATGGCTGTATCATTGTTTTTATGCTGGAGTACATAATTATTCA
ACATGGCTGCCTCTTTAAAAAAAGGTCTATTCATCTATGCAGTTCTTCAA
AATGAAGCAAAATATTTCAAACCCGGTTCAATTGCGTGGGGTATTCAGCA
CTATTACATCACTTTTGTTTTCGACCCCTTGCATTTCACATTTTGCCACC
AATCACAAGTGAAAAATACCCCGTTCATTTGCCAGGATGTGGTGCCTGAC
TGTAATATGAAAGCTTAAACAGTTTCAACCTTTCTATAAATTTCAGCTGA
TAAAAAGGGTGTCGGAATTAGAGAAGAGGGGTGTCAGTGGGTGTTGGACA
TTAGGAAAAATATGCCTCTGTTGATATTTTGAAAAGAAAACTTTCAGGAT
CTGAAAAAATCTCTGATCAAAGTGTTTCTAGTGGAAAATACTAGGGGAAA
GTTTATGGTGTACCGTCAAAAGTGCTATAAACTTGGGACTATCTGAAAAA
ACATGAAACAGCAATTCGGCCACCATTTCACCAAACCTCCAAAGTCATTT
GATTTGAGTTAATGAAAAGCGTATTAAAAAATACGCAATTTCTCTTTCGT
ACTGAGTACTAGGCTTTTAAAAAGGGCACATTATCGGTGAAAGTTATCGT
GACATGTTATGACAGAAAGTATGATTGATAAACTTGGTGGAGTTATCAAA
ACAAATTAGTTGTCAAAGAGATTTGACAGTAATTGAAAATACAGGTCAGA
TAACATTCCCATGTTTCGACCAATCTTCCCAAGTTAGAGCAGTTGACGGT
AGTGGTGACCCCCGTATACAGCTCGCACAACAAAACAGCTACATAAACAG
TCTAAGCTTAAACTCCTATATCAGGATTAGAAACTAGGCTAGTCTTACCT
CTTTTATCCTTCCCTTAACAACAATACAATAATGCTGACAAGTTGACACA
ACACATTGACAAGTAATCCCTGAGAGAAGCTTATATTGAAATCTGCAACA
AAAACGAAAGTGGTCTCTTCTACTGATTGCTTCCCGGCGCTCCTTCGCAG
TTGTTTATCAAATTTCCACCAATGAGGTTGCCACATTTCAAACGGCCCTT
CTTTTTGGCACTCGTGGCCGTAAAATCTCAACTTTCATATATTTGTTTCA
ATCTGTGATCCTAAGGCTTAGGTTGTTTCTCATATAGGAGTTTTGGTCTA
TACTGATAAACTTTCACTGTAAACTTCCCATGCAGGTTTTTTGCAAAAAA
CTTTTGATTTCTTCAGTGATGTGGAGATATTATACAAGATGGCAGGAGGT
TTTTGTACAGAAATCTTCAAAAAATTGGCTTTTCATTGAACTAAGTTTGA
CATGACAGTCAGGAGTAACTGCCTAGATAGAAACAAATTTTTGAATTTCA
CAAATACTCCTATCTAAGATAAGATATAAGTACTTATCTAGGCATAAAAT
TTGTTCTTAGGTTAGAACAAATAAAGTTATCACGATCAGGTCTGCACATT
GATCACGAGAAAGCTAAACACTCGGTAATTTTCAGGAACTTGTGATTTTG
ACTTGAAGTAAGCAAAATTATTACTTTTATTGGGTGAAACATTGATCTTC
CCTGTTATTTTTTACAACAAAAAAATTTGGTAAATTACTTTCTTTTTCAA
TATTGTGAAATCAAGTGCGTATTACTTATGGGTAATGAATCAACGGATCC
TGCACTAATGTACTTCCCAGTTTTCTCAAAGGTAACGAATTGAGAAAACT
GGGAAGTACATTAGTGCAGGATCCGTTGATTCATTTTTCAATATTGCTCC
CCTTCAAATTTTGTACTATTTTTTTCCAGGATGATGAGATTATTACAAAT
ATTGAGGAAAGGAAAAAGCAAAATACCAGGAACTTTTCTTTTCACCAGTT
CGATTCGATGGAAATCTTATCAAGCTCTTCGAAATGCATTATCTGCTGAA
GAAATTTATTCAGAGCTGATTAAAGGTAACAGAGGAGCTTTAGCTAAAGG
TATTACTTTAACAGAATCGACAAGACAGGATCACATTGATGAAGCCCATA
AACTTTTACATTTAACTTTGGAGTATTTAAAGAATAAACAAACTGAGAAA
CCAACTTTTCGCATTGGACTAACCGGTTCGCCTGGTGCTGGGAAAAGTAC
CTTAATTGAAACTCTTGGAAAACAATTAACTTCGTTGGGTCATAAAGTTG
CTGTTTTGGCTGTCGATCCTTCTTCTGCCAAAACAGGTGGATCGCTGCTT
GGTGATCGAACTCGAATGGTCGAACTTTCTCATGACCCAAATGCTTTTAT
ACGACCTTCCCCCTCGTCAGGGACTTTAGGTGGTGTCACAAGGAGAACAA
ATGAAGCTATTGTTTTATGTGAAGGCGCCGGTTATGACATTATTCTTGTC
GAGACAGTTGGCATCGGACAATCTGAATTTGCTGTTTCGAACATGACGGA
TATGTTTGTTTTGATTATACCTCCTGGTTCAGGGGACGAGTTACAAGGGA
TTAAGAAAGGTGTTGTTGAGATGGCTGACTTAGTTCTTATAAACAAAGCA
GATGGAGATTTATTACCAGCCGCTAGAAAAGTTCAAACTGAATATATGAG
TGCTTTGAAAGTATTACAAAGACCAGGTGCTAAATGGACTCCTAAGGTTT
ATCCAGTTTCAGCTCTTCATAATGAGGGTCTTGATAAAGCTTGGTGGAAA
ATAGAACAGTATAAAAGCAAAATGTTAGAAGATGAAACTTTTCTTCAAAG
AAGAAAACACCAATATAAATCATGGATGTGGAATTATGTTCAAGACAATA
TCATGGAACGATTTCTATCCAATGAGAAAGTTAAAAATCGTATCAAGCAT
TTTGAGATACTGGTTGAAAATGAACAGGTTCATCCCGCATTTGCTGCTGA
TGAACTGTTGAAGATTTTTACAAATGAAAATTAATTATTTTATTTTTAGA
TTTCAAATAGCAAAGATTATCGAGAGTGTGATTGCCGAGGGTTTTGTTCA
AACTTCTTTTCCGTAAATAGTTTCAATGACATCTAACTTCCTAGTTTGTA
TTTCAACATAACGTAATTATTTCCTTCCCAATTGGTTAAAAACGCATTTT
TGACGAGGAACCTTCCTTGTCTGTATCACTCAGATGAGATGTGTTTTTAT
AAGATACTTTAATAATTGGTCATTTGAAGTAATAAAAATGACGCGTTCTT
TAGAAAAAGTAACAAAATTGTTTTATTACTGGTTAACGACCAAACAAGTC
AAATAAGAGCTTGTAAAAACTACGTCTCGTCCCGTATCACTCGACCCTAC
ACATCATTTTATTCGTGGTAACATAAAGCACAACTTATTGTAACTAAAAA
TTTTAAATGTTAATTTTCTTGTATAGTTTTATAAAAAGCTTTTTAATTTT
GATATTGTTTTCATATCTTTAGAATATTTTACCTAGAGTTTTCTTTGAGA
GTTAAAAACGAAATATTTCTTTTCA Coding sequence (CDS) from alignment at scaffold_314:437193..441117- >TCONS_00058891 ID=TCONS_00058891|Name=TCONS_00058891|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_314:437193..441117- (Clytia hemisphaerica)
GATGATGAGATTATTACAAATATTGAGGAAAGGAAAAAGCAAAATACCAG
GAACTTTTCTTTTCACCAGTTCGATTCGATGGAAATCTTATCAAGCTCTT
CGAAATGCATTATCTGCTGAAGAAATTTATTCAGAGCTGATTAAAGGTAA
CAGAGGAGCTTTAGCTAAAGGTATTACTTTAACAGAATCGACAAGACAGG
ATCACATTGATGAAGCCCATAAACTTTTACATTTAACTTTGGAGTATTTA
AAGAATAAACAAACTGAGAAACCAACTTTTCGCATTGGACTAACCGGTTC
GCCTGGTGCTGGGAAAAGTACCTTAATTGAAACTCTTGGAAAACAATTAA
CTTCGTTGGGTCATAAAGTTGCTGTTTTGGCTGTCGATCCTTCTTCTGCC
AAAACAGGTGGATCGCTGCTTGGTGATCGAACTCGAATGGTCGAACTTTC
TCATGACCCAAATGCTTTTATACGACCTTCCCCCTCGTCAGGGACTTTAG
GTGGTGTCACAAGGAGAACAAATGAAGCTATTGTTTTATGTGAAGGCGCC
GGTTATGACATTATTCTTGTCGAGACAGTTGGCATCGGACAATCTGAATT
TGCTGTTTCGAACATGACGGATATGTTTGTTTTGATTATACCTCCTGGTT
CAGGGGACGAGTTACAAGGGATTAAGAAAGGTGTTGTTGAGATGGCTGAC
TTAGTTCTTATAAACAAAGCAGATGGAGATTTATTACCAGCCGCTAGAAA
AGTTCAAACTGAATATATGAGTGCTTTGAAAGTATTACAAAGACCAGGTG
CTAAATGGACTCCTAAGGTTTATCCAGTTTCAGCTCTTCATAATGAGGGT
CTTGATAAAGCTTGGTGGAAAATAGAACAGTATAAAAGCAAAATGTTAGA
AGATGAAACTTTTCTTCAAAGAAGAAAACACCAATATAAATCATGGATGT
GGAATTATGTTCAAGACAATATCATGGAACGATTTCTATCCAATGAGAAA
GTTAAAAATCGTATCAAGCATTTTGAGATACTGGTTGAAAATGAACAGGT
TCATCCCGCATTTGCTGCTGATGAACTGTTGAAGATTTTTACAAATGAAA
ATTAAATGGATATACCGATGATGAGATTATTACAAATATTGAGGAAAGGA
AAAAGCAAAATACCAGGAACTTTTCTTTTCACCAGTTCGATTCGATGGAA
ATCTTATCAAGCTCTTCGAAATGCATTATCTGCTGAAGAAATTTATTCAG
AGCTGATTAAAGGTAACAGAGGAGCTTTAGCTAAAGGTATTACTTTAACA
GAATCGACAAGACAGGATCACATTGATGAAGCCCATAAACTTTTACATTT
AACTTTGGAGTATTTAAAGAATAAACAAACTGAGAAACCAACTTTTCGCA
TTGGACTAACCGGTTCGCCTGGTGCTGGGAAAAGTACCTTAATTGAAACT
CTTGGAAAACAATTAACTTCGTTGGGTCATAAAGTTGCTGTTTTGGCTGT
CGATCCTTCTTCTGCCAAAACAGGTGGATCGCTGCTTGGTGATCGAACTC
GAATGGTCGAACTTTCTCATGACCCAAATGCTTTTATACGACCTTCCCCC
TCGTCAGGGACTTTAGGTGGTGTCACAAGGAGAACAAATGAAGCTATTGT
TTTATGTGAAGGCGCCGGTTATGACATTATTCTTGTCGAGACAGTTGGCA
TCGGACAATCTGAATTTGCTGTTTCGAACATGACGGATATGTTTGTTTTG
ATTATACCTCCTGGTTCAGGGGACGAGTTACAAGGGATTAAGAAAGGTGT
TGTTGAGATGGCTGACTTAGTTCTTATAAACAAAGCAGATGGAGATTTAT
TACCAGCCGCTAGAAAAGTTCAAACTGAATATATGAGTGCTTTGAAAGTA
TTACAAAGACCAGGTGCTAAATGGACTCCTAAGGTTTATCCAGTTTCAGC
TCTTCATAATGAGGGTCTTGATAAAGCTTGGTGGAAAATAGAACAGTATA
AAAGCAAAATGTTAGAAGATGAAACTTTTCTTCAAAGAAGAAAACACCAA
TATAAATCATGGATGTGGAATTATGTTCAAGACAATATCATGGAACGATT
TCTATCCAATGAGAAAGTTAAAAATCGTATCAAGCATTTTGAGATACTGG
TTGAAAATGAACAGGTTCATCCCGCATTTGCTGCTGATGAACTGTTGAAG
ATTTTTACAAATGAAAATTAAATGGATATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058891-exon-scaffold_314-1575043694:441038..441117 | TCONS_00058891-exon-scaffold_314-1575043694:441038..441117 | Clytia hemisphaerica | exon |
| TCONS_00058891-exon-scaffold_314-1575043694:437193..438838 | TCONS_00058891-exon-scaffold_314-1575043694:437193..438838 | Clytia hemisphaerica | exon |
| TCONS_00058891-exon-scaffold_314-1510915933:441038..441117 | TCONS_00058891-exon-scaffold_314-1510915933:441038..441117 | Clytia hemisphaerica | exon |
| TCONS_00058891-exon-scaffold_314-1510915933:437193..438838 | TCONS_00058891-exon-scaffold_314-1510915933:437193..438838 | Clytia hemisphaerica | exon |
| TCONS_00058891-exon-scaffold_314-1491911889:441038..441117 | TCONS_00058891-exon-scaffold_314-1491911889:441038..441117 | Clytia hemisphaerica | exon |
| TCONS_00058891-exon-scaffold_314-1491911889:437193..438838 | TCONS_00058891-exon-scaffold_314-1491911889:437193..438838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:437193..441117 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00058891 vs. Swiss-Prot (Human)
Match: MMAA (Methylmalonic aciduria type A protein, mitochondrial OS=Homo sapiens GN=MMAA PE=1 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 2.211e-118 Identity = 177/332 (53.31%), Postives = 235/332 (70.78%), Query Frame = 1
Query: 199 EEIYSELIKGNRGALAKGITLTESTRQDHIDEAHKLLHLTLEYLKNKQTE---KP-TFRIGLTGSPGAGKSTLIETLGKQLTSLGHKVAVLAVDPSSAKTGGSLLGDRTRMVELSHDPNAFIRPSPSSGTLGGVTRRTNEAIVLCEGAGYDIILVETVGIGQSEFAVSNMTDMFVLIIPPGSGDELQGIKKGVVEMADLVLINKADGDLLPAARKVQTEYMSALKVLQRPGAKWTPKVYPVSALHNEGLDKAWWKIEQYKSKMLEDETFLQRRKHQYKSWMWNYVQDNIMERFLSNEKVKNRIKHFEILVENEQVHPAFAADELLKIFTNEN 1182
+++Y+ LI+G R LA+ ITL EST + A LL L Y + ++ KP FR+GL+G PGAGKST IE GK LT GHK++VLAVDPSS +GGSLLGD+TRM ELS D NA+IRPSP+ GTLGGVTR TNEAI+LCEGAGYDIIL+ETVG+GQSEFAV++M DMFVL++PP GDELQGIK+G++EMADLV + K+DGDL+ AR++Q EY+SALK+L++ W PKV +SA EG+ + W K++ ++ ML +R+ Q K WMWN +Q++++E F ++ V+ +I E V + P AAD LLK F + +
Sbjct: 87 DKLYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALSPGLAADFLLKAFKSRD 418
The following BLAST results are available for this feature:
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