TCONS_00058850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058850
Unique NameTCONS_00058850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058850 ID=TCONS_00058850|Name=TCONS_00058850|organism=Clytia hemisphaerica|type=transcript|length=1295bp
TGCCACAAATGTGGATGGTTCACAGtTCGATGTTGGAGGAAATGCAGCAT
TGATGGGGTTGAAAATGCTTTACTCAAATCCTAACAGTACTGTGCTACTA
GGAGGACCAGTaggaaaaagattgaaatcCATGCTTGATGGTCGGATCGT
GATTCCTAAGCAACTTCTACAAGAAGAAGACGAATACCATCTTATACTGG
AATATCCGAGAGGTGAAAGCTGGGGTGAAAAGAAATCCAATTGTGCGAAC
CGTTTCATCATATCACATGATAAGGCTAATGGTCAGATGGCTGCATTGGA
TAATTTCTTTAACTCGTTGGAAAGTTTTCAACCTGAGCTTGTGGTCATTT
CTGGACTTCATTTACTGGAAGGGCAAACCGAAGAAATTCGTAAAACAAAA
CTGGAAGATCTACGTCATCATTTACGTGCTATTGAAGAAGACACTCCCAT
ACATTTAGAGTTGGCTAGTATGACTTCACCAAAGCTTATGGAAGATATTG
CCTACATGATTTTTCCGATGGTCGACTCTGTTGGATTAAATGAACAAGAA
CTGGCTTTCTTGTCTTCATCTTTGAATGGACCAGGAGGAAAAGAAGAACT
CACTCAAAGCCCACCAGAAATCGGGTTGATGGCTGACATATTAGATTGGG
CTTTGAATACTTTTGGTCGAAACACGCGATACGGTGGTGCTAGTTCACGC
TTAACACGAATCCATTTTCACTGCTTAATCTACCATGTTATTTGTGTACA
TGAAGGTTACTGGGGTAACGCTTTAGCCGCGACGGCTGCTGGATCGCGAG
CAGCGTCAAGACAGGCTTGTGATAAGGAAGATGTTTCGACTTCAGAACTG
GAGTTACGTACACCGGAATACTTTGCACGTTCTGTACAGAATTGGCAACT
ACGCCGGAATTTAGTAAAACATGACGATGCGAATCCTGTCACTCAATGGA
CGAATAATCatcttaatttttattttagtgcaGTTTTGGTTTGTAAGAAA
CCGAAGCGAACTGTTGGTCTGGGTGATTGTATTTCTGCCACAGGCTTACA
GCAATCTAAATTTCTAtgaatttttatcattatttttttaatgaatatgc
acagatttttttttattatttcacattgaattgaaaTGTATTTTTTAAGA
CATTCATAGTTTTGTAGTGCatacagaaaaaaattataaaatccaTTTTT
ACTGCCAACCGAAAAGGTTGACTTTCGTCATATGTACTTTATTAATTAat
cttttgaaatgttttaacGTTATTTTAACGTCAGAAACTTTCGCG
Run BLAST on NCBI

transcript from alignment at scaffold_314:532700..536656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058850 ID=TCONS_00058850|Name=TCONS_00058850|organism=Clytia hemisphaerica|type=transcript|length=3957bp|location=Sequence derived from alignment at scaffold_314:532700..536656+ (Clytia hemisphaerica)
TGCCACAAATGTGGATGGTTCACAGGTGATTAAAGACTCTCTGTTTTTCT
TTCAGAATCGTTTGAAATTCTTAACTAAAACCTAACACATTATCTAACTC
GCATACTTTATGCTTTTTTCCACTTTGATTTTTTAGCTGTAATGGTGGAG
AAGGGTTATTTATACCACATGCAGCATAAATTGAAAGTGTAGCTTATTAT
TTCAAAGACAAACACCTTTGACTAACGTAAGGTGCTGGCTGCATCATTGA
GGCGCGCGATAGCACGCGCACAtctccacacacacctaaaataTCTGGAG
TACCATCAATCACACCCCATAGAGTAATTTTCACAATTTAAAGTTGTGCA
TAGCACTCCCTATCACACGTCTTATTTACTAACATTAAGgttttaggagt
gtgattgGCCACACGCCTGGAATTTCCTAATGATGCAGCCTGACTGTGTa
tggttttcttatttttctagtTCGATGTTGGAGGAAATGCAGCATTGATG
GGGTTGAAAATGCTTTACTCAAATCCTAACAGTACTGTAAGTTTGGATTG
TATCTATGAGAAATGTCAGTACAAGTACAAGCGTCTCTCAATGTTTATAT
TCCTTTATTTTTACCATGCTACAGTATTATAAGGTTTAACTGATTGGCTT
CATAATTTTTCTGGTATGGATGCGCTGCTCTAAGTTATCGATGAACCAAA
TAAAAGCACCACTTCTAAAACATGCGCCATACCAATAGGACTGATGTTTT
CATAGGTGCTACTAGGAGGACCAGTaggaaaaagattgaaatcCATGCTT
GATGGTCGGATCGTGATTCCTAAGCAACTTCTACAAGAAGAAGACGAATA
CCATCTTATACTGGAATATCCGAGAGGTGAAAGCTGGGGTGAAAAGAAAT
CCAATTGTGCGAACCGTTTCATCATATCACATGATAAGGCTAATGGTCAG
ATGGCTGCATTGGATAATTTCTTTAGTGAGTGCCTTTTTTCTCAGAATTT
CTTTGGCACAGTTAGATCACATTGTCACTACCGCTAATTTCATTGTCGAT
GGTGCTGTTTGGTTAGATTACCACTAGCCTAGGTACAAAATCGGTTTTTC
ACTTCCTTGAGCTTCTTTTTAGTGCTAAGAAGAGTGTTGATATTGTTAGT
CTACTTTTTCTCTAACGTATACatgttttattaatttttgacttcatatt
atggcgcgccaaagcggaaataaatactatctttttaaaacaatactatc
ttcgtttagaacatactatctttgttataaacatactatcttcgtttaaa
acatactatcttttttaaaacatactattttttgcttaaaaaatactatt
ttcgtttaaaacatagtatctttaaaaaataatactatttttaatatctt
tcatactatctttttaaaacaatactatatttgttgtaaacatactatct
tcgtttaaaaaatactatctttttaaaaaatactatcttttttcgaatta
aggttgcctcgattattcaaatttgtgtaattttcattttgaggggcGTG
TAATGGGCGTTGGTTTTTCGTGTTTATTTTATATGGCCTCATCCACTTTC
atcaaacatcaaaacaaagtggaGCCGCGGCGGCCTCTGATGTTTCTTAG
ACAGAATAAAAAGATGAGTCTGGAAGCTCTGTAAAATGGTTTCTTTTATG
ACATCCCATGTAGTCCCAagctagagcagttgacagtagcattagccccc
cccccgcttgctTGCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTC
AAacggaaatagtattttttcaacgaaaatagtattttttgaacgaaaat
agtatgttttaatcgaaaatagtattttttaaaaaagatagtatgtttta
aagagatagtatttatttccgctttggcgcgccatatcATATTACCTTCA
TTAGTTTAGTTTTGCCCACTTTTTATTAGGCTTATTCGGATATTTCGCAT
GTTTAGATTGGATTGTATGCCCAGTAGTGAGATCTCGCCTAAttattgaa
aaatgttttctcccCATTTTAGACTCGTTGGAAAGTTTTCAACCTGAGCT
TGTGGTCATTTCTGGACTTCATTTACTGGAAGGGCAAACCGAAGAAATTC
GTAAAACAAAACTGGAAGATCTACGTCATCATTTACGTGCTATTGAAGAA
GACACTCCCATACATTTAGAGTTGGCTAGTATGACTTCACCAAAGCTTAT
GGAAGATATTGCCTACATGATTTTTCCGATGGTCGACTCTGTTGGATTAA
ATGAACAAGAACTGGCTTTCTTGTCTTCATCTTTGAATGGACCAGGAGGA
AAAGAAGAACTCACTCAAAGCCCACCAGAAATCGGTAAACAGCTTTATCG
GGTCCATTTGAAGTTTTATTCCAAATATTTAAATTAGTTGTAATTCTTTT
CTTTCCTCTAGCTtatgttgattttgttttttttaacctATTTTATCATA
GATAGGTGATGGTCCAGGTAGAACATGCGCGAATGTGGCAAGTCTGATTT
TAATGGATGAGTTCTCTTTGAATagattattcaattttcatccatataaa
ctattacatagatcaatgttcttagctaATTACTTTCTTACCAATGATGT
ATGTTAAGAATATGTTTGAGAATAACTCTCAAAACAATTAATACAAATGA
TTATCAAGCTTTCTTGAATAAGGTTTTAGAGTTTTCAATTTTATTGTCCT
CAATGTTTCATGTTCTGTAGATTGATctggtaggtccataaaagcaTCAC
TTGTTAGTGTCAACCTTGATAGCCCTTTCCGTTCTTTTTCACCGCGAGTA
TGAAAGGGCAGTCAATTAAAATTTAATCATCACAGCAAATTTTTCGCTCA
CTGATTCTTTTAAAGCTAACTTTAAATTCTTTCAGGGTTGATGGCTGACA
TATTAGATTGGGCTTTGAATACTTTTGGTCGAAACACGCGATACGGTGGT
GCTAGTTCACGCTTAACACGAATCCATTTTCACTGCTTAATCTACCATGT
TATTTGTGTACATGAAGGTTACTGGGGTAACGCTTTAGCCGCGACGGCTG
CTGGATCGCGAGCAGCGTCAAGACAGGCTTGTGATAAGGAAGATGTTTCG
ACTTCAGAACTGGAGTTACGTACACCGGAATACTTTGCACGTTCTGTACA
GAATTGGCAACTACGCCGGAATTTAGTAAAACATGACGATGCGAATCCTG
TCACTCAATGGACGAATAATCatcttaatttttattttagtgcaGTTTTG
GTTTGTAAGAAACCGAAGCGAACTGTTGGTCTGGGTGATTGTATTTCTGC
CACAGGCTTACAGCAATCTAAATTTCTAtgaatttttatcattatttttt
taatgaatatgcacagatttttttttattatttcacattgaattgaaaTG
TATTTTTTAAGACATTCATAGTTTTGTAGTGCatacagaaaaaaattata
aaatccaTTTTTACTGCCAACCGAAAAGGTTGACTTTCGTCATATGTACT
TTATTAATTAatcttttgaaatgttttaacGTTATTTTAACGTCAGAAAC
TTTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037074XLOC_037074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058850-exon-scaffold_314-1491911889:532700..532724TCONS_00058850-exon-scaffold_314-1491911889:532700..532724Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1510915933:532700..532724TCONS_00058850-exon-scaffold_314-1510915933:532700..532724Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1575043694:532700..532724TCONS_00058850-exon-scaffold_314-1575043694:532700..532724Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1491911889:533170..533235TCONS_00058850-exon-scaffold_314-1491911889:533170..533235Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1510915933:533170..533235TCONS_00058850-exon-scaffold_314-1510915933:533170..533235Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1575043694:533170..533235TCONS_00058850-exon-scaffold_314-1575043694:533170..533235Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1491911889:533455..533674TCONS_00058850-exon-scaffold_314-1491911889:533455..533674Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1510915933:533455..533674TCONS_00058850-exon-scaffold_314-1510915933:533455..533674Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1575043694:533455..533674TCONS_00058850-exon-scaffold_314-1575043694:533455..533674Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1491911889:535122..535433TCONS_00058850-exon-scaffold_314-1491911889:535122..535433Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1510915933:535122..535433TCONS_00058850-exon-scaffold_314-1510915933:535122..535433Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1575043694:535122..535433TCONS_00058850-exon-scaffold_314-1575043694:535122..535433Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1491911889:535985..536656TCONS_00058850-exon-scaffold_314-1491911889:535985..536656Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1510915933:535985..536656TCONS_00058850-exon-scaffold_314-1510915933:535985..536656Clytia hemisphaericaexon
TCONS_00058850-exon-scaffold_314-1575043694:535985..536656TCONS_00058850-exon-scaffold_314-1575043694:535985..536656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:532700..536656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0055799	6.38971	2.37012	0.411532	7.91598	2.98668	3.9187	6.43421	7.45439	6.0757	6.06176	4.42148	5.03146	2.96616	4.72442	6.12163	3.69282	6.07278	1.88837	6.94631	1.47588	0.53457	0.442497	0.442159	2.36554	2.93112	0	0.776849	3.26126	4.02219
Blast
[Close]
BLAST of TCONS_00058850 vs. Swiss-Prot (Human)
Match: ADPGK (ADP-dependent glucokinase OS=Homo sapiens GN=ADPGK PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 3.339e-94
Identity = 168/354 (47.46%), Postives = 228/354 (64.41%), Query Frame = 2 
Query:    2 ATNVDGSQFDVGGNAALMGLKMLYSNPNSTVLLGGPVGKRLKSMLDGRIVIPKQLLQEEDEYHLILEYPRGESWGEKKSNCANRFIISHDKANGQMAALDNFFNSLESFQPELVVISGLHLLEGQTEEIRKTKLEDLRHHLRAIEEDTPIHLELASMTSPKLMEDIAY-MIFPMVDSVGLNEQELAFLSSSLNGPGGKEELTQSPPEIGLMADILDWALNTFGRNTRYGGASSRLTRIHFHCLIYHVICVHEGYWGNXXXXXXXXXXXXXXXXCDKEDVSTSELELRTPEYFARSVQNWQLRRNLVKHDDANPVTQWTNNHLNFYFSAVLVCKKPKRTVGLGDCISATGLQQSK 1060
            A+   G+Q  VGGNAAL+G K   +N +  VLL GPVG +L  +LD  + +P + LQE DE+HLILEY  GE WG+ K+  ANRFI SHD +NG M  L+ F +SLE FQP+LVV+SGLH++EGQ++E+++ +L ++   +  I    P+HLELASMT+ +LM  I +  +FP V S+GLNEQEL FL+ S +GP          P++G+++DIL W L   GR+      +S LTRIHFH L+YH++   +G+W N LAA AAG+R A  QAC  E + TS + LR P+ F  S      R  L   +   PV +W    ++F+F+ VLVCK P RTVGLGD ISA GL  S+
Sbjct:  146 ASEFPGAQHYVGGNAALIGQK-FAANSDLKVLLCGPVGPKLHELLDDNVFVPPESLQEVDEFHLILEYQAGEEWGQLKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKELQRKRLLEVVTSISDIPTGIPVHLELASMTNRELMSSIVHQQVFPAVTSLGLNEQELLFLTQSASGPHSSLSSWNGVPDVGMVSDILFWILKEHGRSKSR---ASDLTRIHFHTLVYHILATVDGHWANQLAAVAAGARVAGTQACATETIDTSRVSLRAPQEFMTSHSEAGSRIVL---NPNKPVVEWHREGISFHFTPVLVCKDPIRTVGLGDAISAEGLFYSE 492
The following BLAST results are available for this feature:
BLAST of TCONS_00058850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADPGK3.339e-9447.46ADP-dependent glucokinase OS=Homo sapiens GN=ADPGK... [more]
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