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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058842 ID=TCONS_00058842|Name=TCONS_00058842|organism=Clytia hemisphaerica|type=transcript|length=1326bp
aaagaagacAACAGACATCGGAACAAAAATTCAAGTAAAACTGGTGGAAA
ATAGAAGTATCAAAAATAggataaattttgaaagtaaaaataaatttgaa
ttgattttcACTTAGAAGATATCACTAacagctgtgaaagagtattcTAA
TAGCAGTATTAACGAAGTCTATGTCCATGAGAAAGATGAAGTTTGTATGT
TTGTTGTTAGCAACGGCCACCATTTTGGCCTGTTGTCAAGGTAAAGAAGA
GGATGTAGGGCCAGTAATTGGTATCGACCTGGGAACTACTTATTCATGtg
TCGGAATCTTTAAAAACGGACGTGTTGAAATTATTCCAAATGACCAAGGT
AACCGCATTACTCCATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATT
GATCGGTGACGCTGCCAAGAATCAGTTGACATCCAACCCTGAAAACACTG
TCTTTGATGCCAAACGTTTGATTGGTCGAGAATGGAGTGACCAGAATGTT
CAGAAAGATCGGAAACTATATCCTTTCAAAGTAGTTGAGAGCACCGGTAA
ACCAAGTTTGAAAGTTCATGTCAAAAATGGTGAAGAAAAGAATTTTACCC
CTGAAGAAATCAGCGCCATGATTCTTGGGAAAATGAAGGATATTGCGGAG
GCATACACAGGACAAAACATTAGTAACGCTGTAGTCACCGTCCCTGCTTA
CTTTAATAATGCACAAAGACAAGCTACCAAAGATGCTGGCAAAATCTCTG
GTTTAAACATTATGAGAATAATCAACGAACCAACTGCTGCTGCTATCGCT
TACGGTTTGGACAAGAAAGACGGAGAAAAGAACATCCTGGTTTTCGACTT
AGGAGGTGGTACCTTTGATGTATCTTTGTTGGCTTTGGATGGAGGTGTTT
TTGAAGTCATGGCAACAAGTGGGAATAACCATTTAGGTGGAGAAGACTTT
GATCAACGAATCATGGAATATTTCATCAAGGTTTATAAAAAGAAGACTGG
AAAGGATATAAGACGAGACAATAAAGCAATGCAGAAATTACGACGTGAAG
TTGAAAAAGCTAAACGCACTTTGAGTACACAACACCAAGTGAATATCGAG
ATTGATTCGTTTTTTAATGGCGAAGACTTCTCCGAAACTTTAACCAGAGC
TAAATTCGAAGAATTGAACATGGATCTTTTCAAATCAACTCTCAAACCAG
TTAAACAAGTCTTAAATGACTCTGGTCTCAAGAAATCTCAAATCGATGAA
GTCGTCCTCGTTGGTGGTTCTACACGCATTCCAAAGATTCAAAGTTTAGT
CAAAGAATTCTTCGGAGGAAAAGAAC Run BLAST on NCBI transcript from alignment at scaffold_314:452626..455068+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058842 ID=TCONS_00058842|Name=TCONS_00058842|organism=Clytia hemisphaerica|type=transcript|length=2443bp|location=Sequence derived from alignment at scaffold_314:452626..455068+ (Clytia hemisphaerica)
aaagaagacAACAGACATCGGAACAAAAATTCAAGTAAAACTGGTGGAAA
ATAGAAGTATCAAAAATAggataaattttgaaagtaaaaataaatttgaa
ttgattttcACTTAGAAGATATCACTAacagctgtgaaagagtattcTAA
TAGCAGTATTAACGAAGTCTATGTCCATGAGAAAGATGAAGTTTGTATGT
TTGTTGTTAGCAACGGCCACCATTTTGGCCTGTTGTCAAGGTAAAGAAGA
GGATGTAGGGCCAGTAATTGGTATCGACCTGGGAACTACTTATTCATGGT
AAGAATCATTGCAAAATTAACAACAACTACTtgggggggggttcatggtt
ggcggaggagcggaatcggcccttttttcggacggagtggcggNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNattttcggtgacggaattttggttcaatttaagacggtgtg
acggaaattggagaaaaaattggcggaattacggaatcgggtaccccctg
aaacccccccctacttgaacataaaatattttcttgttatcattacatcc
ctgtctcagtgacatGGTGAGAACTCTTGAGACAGTGAAATCGTGAAAAT
ATAAACTTTAATTCCGCGACGAGTATAGAAATCGCGTTTTTAATTTAGGA
TGAAATTGCAGGTTGTTTTTCTAGCTAGGGATGATATTGTTCGATTTGAT
TATTCAAATGGATAGAGGGTTCCTCTCAGTCTATGACATGGATGTGTATT
ACATTTAAGGCAACCTGGGCAACTGACTGGTCTTTTCGTCCAATACCGGT
CGCTGTTAAGCTCTTAACTTTTACAGTACTTTCTTCTACATCATGCGTAA
AACATATACATAAAACTACCATTGacaaatagttctttttataacgaatt
ttgtatttttagtgTCGGAATCTTTAAAAACGGACGTGTTGAAATTATTC
CAAATGACCAAGGTAACCGCATTACTCCATCATATGTTGCTTTCACCAGT
GAAGGTGAAAGATTGATCGGTGACGCTGCCAAGAATCAGTTGACATCCAA
CCCTGAAAACACTGTCTTTGATGCCAAACGTTTGATTGGTCGAGAATGGA
GTGACCAGAATGTTCAGAAAGATCGGAAACTATATCCTTTCAAAGTAGTT
GAGAGCACCGGTAAACCAAGTTTGAAAGTTCATGTCAAAAATGGTGAAGA
AAAGAATTTTACCCCTGAAGAAATCAGCGCCATGATTCTTGGGAAAATGA
AGGTAAAGATTCCACTGCAAGCTTTGAATTAAATCGTTCCACGTACATCC
CCTTGCTTATTCTCTTTTTAACAAAACTTGTAGGTATATTTGTAGTCAAC
AAAAGTCTCgattaaagaatattttttattctgTAAACACCACTCAAAAT
CTACAGACAAAAAGTGTAGCATAAAATCTATGTCATTCCTTTCCTCTACT
ACTAGGATATTGCGGAGGCATACACAGGACAAAACATTAGTAACGCTGTA
GTCACCGTCCCTGCTTACTTTAATAATGCACAAAGACAAGCTACCAAAGA
TGCTGGCAAAATCTCTGGTTTAAACATTATGAGAATAATCAACGAACCAA
CTGCTGCTGCTATCGCTTACGGTTTGGACAAGAAAGACGGAGAAAAGAAC
ATCCTGGTTTTCGACTTAGGAGGTGGTACCTTTGATGTATCTTTGTTGGC
TTTGGATGGAGGTGTTTTTGAAGTCATGGCAACAAGTGGGAATAACCATT
TAGGTGGAGAAGACTTTGATCAACGAATCATGGAATATTTCATCAAGGTT
TATAAAAAGAAGACTGGAAAGGATATAAGACGAGACAATAAAGCAATGCA
GAAATTACGACGTGAAGTTGAAAAAGCTAAACGCACTTTGAGTACACAAC
ACCAAGTGAATATCGAGATTGATTCGTTTTTTAATGGCGAAGACTTCTCC
GAAACTTTAACCAGAGCTAAATTCGAAGAATTGAACATGGATCTTTTCAA
ATCAACTCTCAAACCAGTTAAACAAGTCTTAAATGACTCTGGTCTCAAGA
AATCTCAAATCGATGAAGTCGTCCTCGTTGGTGGTTCTACACGCATTCCA
AAGATTCAAAGTTTAGTCAAAGAATTCTTCGGAGGAAAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058842-exon-scaffold_314-1491911889:452626..452923 | TCONS_00058842-exon-scaffold_314-1491911889:452626..452923 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1510915933:452626..452923 | TCONS_00058842-exon-scaffold_314-1510915933:452626..452923 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1575043694:452626..452923 | TCONS_00058842-exon-scaffold_314-1575043694:452626..452923 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1491911889:453838..454177 | TCONS_00058842-exon-scaffold_314-1491911889:453838..454177 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1510915933:453838..454177 | TCONS_00058842-exon-scaffold_314-1510915933:453838..454177 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1575043694:453838..454177 | TCONS_00058842-exon-scaffold_314-1575043694:453838..454177 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1491911889:454381..455068 | TCONS_00058842-exon-scaffold_314-1491911889:454381..455068 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1510915933:454381..455068 | TCONS_00058842-exon-scaffold_314-1510915933:454381..455068 | Clytia hemisphaerica | exon |
| TCONS_00058842-exon-scaffold_314-1575043694:454381..455068 | TCONS_00058842-exon-scaffold_314-1575043694:454381..455068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:452626..455068 + |
Blast
BLAST of TCONS_00058842 vs. Swiss-Prot (Human)
Match: GRP78 (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2) HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0 Identity = 286/363 (78.79%), Postives = 327/363 (90.08%), Query Frame = 3
Query: 237 QGKEEDVGPVIGIDLGTTYSCVGIFKNGRVEIIPNDQGNRITPSYVAFTSEGERLIGDAAKNQLTSNPENTVFDAKRLIGREWSDQNVQKDRKLYPFKVVESTGKPSLKVHVKNGEEKNFTPEEISAMILGKMKDIAEAYTGQNISNAVVTVPAYFNNAQRQATKDAGKISGLNIMRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLALDGGVFEVMATSGNNHLGGEDFDQRIMEYFIKVYKKKTGKDIRRDNKAMQKLRREVEKAKRTLSTQHQVNIEIDSFFNGEDFSETLTRAKFEELNMDLFKSTLKPVKQVLNDSGLKKSQIDEVVLVGGSTRIPKIQSLVKEFFGGKE 1325
+ K+EDVG V+GIDLGTTYSCVG+FKNGRVEII NDQGNRITPSYVAFT EGERLIGDAAKNQLTSNPENTVFDAKRLIGR W+D +VQ+D K PFKVVE KP ++V + G+ K F PEEISAM+L KMK+ AEAY G+ +++AVVTVPAYFN+AQRQATKDAG I+GLN+MRIINEPTAAAIAYGLDK++GEKNILVFDLGGGTFDVSLL +D GVFEV+AT+G+ HLGGEDFDQR+ME+FIK+YKKKTGKD+R+DN+A+QKLRREVEKAKR LS+QHQ IEI+SF+ GEDFSETLTRAKFEELNMDLF+ST+KPV++VL DS LKKS IDE+VLVGGSTRIPKIQ LVKEFF GKE
Sbjct: 21 EDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKE 383
The following BLAST results are available for this feature:
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