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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058841 ID=TCONS_00058841|Name=TCONS_00058841|organism=Clytia hemisphaerica|type=transcript|length=2572bp
GTTGATCTACAAAATCTCGTCCAAATCTAACTGGAAGGTCGACTGGTGTT
GTGGTTGTCCAACACTGAAACGTTTTCAAAGATGAAGTGTATCTATTTCA
TTGCGCTACTTGTTGTAGCATGTTCTGTTTATtgtgaagaagaaaagaaa
gaggaaaaagataaaaaagaaagtATCGGAACAGTTGTTGGTATTGATCT
TGGAACAACTTATTCTTGtgttggagtcttcaaaaacgGACGTGTTGAAA
TCATCCCAAATGACCAAGGTAACCGTATCACTCCATCATATGTTGCTTTC
ACCAGTGAAGGTGAAAGATTGATTGGTGATGCTGCCAAGAATCAGTTGAC
ATCCAACCCTGAAAACACTGTCTTTGATGCCAAACGTTTGATTGGACGTG
AATGGAGTGAAAAATCAGTTCAATCTGACATCAAATATTTCCCATTTAAA
GTCGTGCAGAAGGGAGGCAAACCACACATTACAGTCGATGTCAAAGAAGG
AGAAGCAAAAACTTTTGCTGCTGAAGAAATCAGTGCTATGGTCTTGAACA
AAATGAAgGACATTGCTGAAGCTTACTTGGGAAAGAAAGTAACCCATGCC
GTTGTCACTGTCCCAGCCTACTTCAATGATGCCCAACGTCAAGCCACCAA
GGATGCTGGAACCATCTCTGGATTAAATGTTATGAGAATCATTAACGAAC
CAACTGCTGCTGCCATTGCTTACGGTTTGGACAAGAAAGAAGGAGAAAAG
AACATCCTTGTCTTCGATTTGGGAGGTGGTACCTTCGATGTTTCCCTTTT
GACCATTGACAATGGGGTCTTTGAAGTTGTTTCCACCAGTGGAGATACTC
ATCTTGGAGGTGAAGATTTCGATCAACGTGTCATGgaatattttgtcaaa
atctacaaaaagaaGAAGGGAAAAGACATCAGAAAGGACAACCGTGCCCT
CCAAAAACTCCGACGTGAAGTTGAAAAAACCAAACGTGCCCTCAGTACTG
CCCATCAAGCCAGAGTTGAAGTTGAATCTTTGTTTGATGGTGAAGACTTC
TCTGAAACCTTAACCAGAGCTAAATTCGAAGAATTGAACATGGATCTTTT
CAAATCAACCCTCAAACCAGTTAAGCAAGTCTTGGATGACTCTGGTCTTA
AAAAATCGGAAATTGACGAAATTGTCCTTGTTGGTGGTTCCACTCGTATC
CCCAAAGTCCAATCTTTGGTCAAAGATTTCTTCGGTGGAAAAGAACCAAG
TAGAGGGATCAACCCCGACGAAGCAGTGGCATATGGTGCAGCCATTCAAG
GCGGTATATTAAGTGGTGAGGAAAAGCTAGATATTGCTGTGATCGATATC
AACCCACTCACATTGGGAATCGAGACTGTTGGTGGAGTGATGACGAAATT
GATCGATCGAAATACTGTAGTTCCTACTAAAAAGTCACAAGTTTTCTCAA
CGTCGGCAGATAGACAACCGACTGTCACCATCAAAGTCTTCGAAGGAGAA
CGTCCAATGACCAAGGATAACCATCTTTTGGGAAAATTCGATTTGAACGG
AATCCCACCAGCACCAAGAGGTGTTCCACAAATTGAAGTCACTTTCGAAA
TCGACGTCAACGGTATCTTGAGAGTCAGTGCTGAAGACAAAGGAACCGGC
AAGAAAGAAAAGATCACCATTACCAACGATCAAAACAGATTGTCTCCTGA
AGATATCGAACGTATGGTCAACGAAGCTGAACAATTTGCTGACGAAGACA
AGAAAGTCAAAGAAAAGGTCGAAGCTAAGAACGAATTTGAAAGCTATGCT
TACTCATTGAAAAACCAAATTGGAGATAAGGACAAATTAGGTAGCAAATT
GAGCGAAGAAGACAAAGCTGCTTTAGAAAAAGCTACCGACGAAGCTGTCT
CATGGTTGGAAAGCCATGCTGATGCTTCAACTGAAGAActtaaagaagaa
aagaagaaattggAGGATGTAGCCACTCCAATTGTTAGTAAAATCTACCA
ACAACAAGGTGGACAACCAGGAGGAGAGGGTGAGGCTCCAAACCCAGGAT
CTGAAGAGAAAGAAGACAAAGATGAACTTTAGATCTTTTTATATAGCTAG
gtttataaaatttttacaaaattctttagTTTAATCTGCGGATATTTCTT
GGATGGATTTTGCACCCACAAATTACTACTGACACAAAAAGGTTTTTATA
cttgaatttttaagaaaagtgGTTAAATTATACGTTGAAAGttcttcaaa
tttatttattgattttattatcTGTTTTTGAGGAGACGTAtaattaattc
atgatattgtATGTATAATGGATTTTGTTCCTACAGGTACACAAAagcaa
aaaacaaatttctatATTGTTAAAATAAAGAGTTTGTTTCACTGTCATTT
TTTGCCCTTCTGCGATACTTTTCCGAAATGCTAGGAGTGGGTTACGAGcg
gttttaaatattttagagGCTTTTGTGAGAGACAGGAAAGAAAGGACAGC
AAAATTGCACTTTTTCGACAGAAATGATCTTAGCTCTTTTATTTTAACCT
ACAGTAAGCAATCCATTCGGTA Run BLAST on NCBI transcript from alignment at scaffold_314:441416..444962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058841 ID=TCONS_00058841|Name=TCONS_00058841|organism=Clytia hemisphaerica|type=transcript|length=3547bp|location=Sequence derived from alignment at scaffold_314:441416..444962+ (Clytia hemisphaerica)
GTTGATCTACAAAATCTCGTCCAAATCTAACTGGAAGGTCGACTGGTGTT
GTGGTTGTCCAACACTGAAACGTTTTCAAAGATGAAGTGTATCTATTTCA
TTGCGCTACTTGTTGTAGCATGTTCTGTTTATtgtgaagaagaaaagaaa
gaggaaaaagataaaaaagaaagtATCGGAACAGTTGTTGGTATTGATCT
TGGAACAACTTATTCTTGGTAAGATTTTCACTTCTCAGCAAGACAAGACa
agtttcaattaaattaagcCCAGCTATCGAATTCTCTGACACAAAAGTAA
AAcaaggaaaaacaaaaattttgtatCTAATTTCTGGGAAGTTCATAATT
GGTTTTTTTCTTGGGTATAATACAATCAGATCTGACATTTGGTCTGCTCT
AATCGAGTAGTGAAATCTGTCTtgacttaaagggataatcagatggtttg
agatatttgtcGCGTGGAGTCTATCTATTGTCCTGAGCtaaacctcaaaa
tatttttgcctaaatattttccaaagttgagaTATGTTATAAACTACaag
tttttgacaaaaatacttgGCAATTTTATTCAAAACCACTGAGggtttct
tcaggcaaaaaaattcaaaccatctgattatttCTTTAAGAGTTATATAG
TAATATTTGGTGAAATCTAAATCCTAACGTTTCAAGTggtttaattattt
tttcagtgttggagtcttcaaaaacgGACGTGTTGAAATCATCCCAAATG
ACCAAGGTAACCGTATCACTCCATCATATGTTGCTTTCACCAGTGAAGGT
GAAAGATTGATCGGTGATGCTGCCAAANTCAGtgttggagtcttcaaaaa
cgGACGTGTTGAAATCATCCCAAATGACCAAGGTAACCGTATCACTCCAT
CATATGTTGCTTTCACCAGTGAAGGTGAAAGATTGATTGGTGATGCTGCC
AAGAATCAGTTGACATCCAACCCTGAAAACACTGTCTTTGATGCCAAACG
TTTGATTGGACGTGAATGGAGTGAAAAATCAGTTCAATCTGACATCAAAT
ATTTCCCATTTAAAGTCGTGCAGAAGGGAGGCAAACCACACATTACAGTC
GATGTCAAAGAAGGAGAAGCAAAAACTTTTGCTGCTGAAGAAATCAGTGC
TATGGTCTTGAACAAAATGAAggtaaatagaaaaaaatgagaTATCAATT
TGTGTTAAgttaatttttaaattaatgTTTTCCTGTCTTCGTTTTGATGC
TCAAGTTTTATGAAATCTCATAGTGATTCACAAAAAGGTCTGTCTCTGCC
TCACCTTGTAAAACATTCAgcaataatttttgttatatTCCATAGGACAT
TGCTGAAGCTTACTTGGGAAAGAAAGTAACCCATGCCGTTGTCACTGTCC
CAGCCTACTTCAATGATGCCCAACGTCAAGCCACCAAGGATGCTGGAACC
ATCTCTGGATTAAATGTTATGAGAATCATTAACGAACCAACTGCTGCTGC
CATTGCTTACGGTTTGGACAAGAAAGAAGGAGAAAAGAACATCCTTGTCT
TCGATTTGGGAGGTGGTACCTTCGATGTTTCCCTTTTGACCATTGACAAT
GGGGTCTTTGAAGTTGTTTCCACCAGTGGAGATACTCATCTTGGAGGTGA
AGATTTCGATCAACGTGTCATGgaatattttgtcaaaatctacaaaaaga
aGAAGGGAAAAGACATCAGAAAGGACAACCGTGCCCTCCAAAAACTCCGA
CGTGAAGTTGAAAAAACCAAACGTGCCCTCAGTACTGCCCATCAAGCCAG
AGTTGAAGTTGAATCTTTGTTTGATGGTGAAGACTTCTCTGAAACCTTAA
CCAGAGCTAAATTCGAAGAATTGAACATGGATCTTTTCAAATCAACCCTC
AAACCAGTTAAGCAAGTCTTGGATGACTCTGGTCTTAAAAAATCGGAAAT
TGACGAAATTGTCCTTGTTGGTGGTTCCACTCGTATCCCCAAAGTCCAAT
CTTTGGTCAAAGATTTCTTCGGTGGAAAAGAACCAAGTAGAGGTAAATAA
CATTTTGATTAAAGATATGGTTTATACCCTACTTTTTGCCAAAACACACG
TTTTGAAGCAAAACAGCACTTACACTGCTTAGTTCTCTCTAAAATTTAAG
GTACTTCGCTCCTATAAATGTGCACTGTTAGATTATTACACTAAAAACTT
AAACTAAGAAAATTGTTTCCTNATTTTTAGGGATCAACCCCGACGAAGCA
GTGGCATATGGTGCAGCCATTCAAGGCGGTATATTAAGTGGTGAGGAAAA
GCTAGATATTGCTGTGATCGATATCAACCCACTCACATTGGGAATCGAGA
CTGTTGGTGGAGTGATGACGAAATTGATCGATCGAAATACTGTAGTTCCT
ACTAAAAAGTCACAAGTTTTCTCAACGTCGGCAGATAGACAACCGACTGT
CACCATCAAAGTCTTCGAAGGAGAACGTCCAATGACCAAGGATAACCATC
TTTTGGGAAAATTCGATTTGAACGGAATCCCACCAGCACCAAGAGGTGTT
CCACAAATTGAAGTCACTTTCGAAATCGACGTCAACGGTATCTTGAGAGT
CAGTGCTGAAGACAAAGGAACCGGCAAGAAAGAAAAGATCACCATTACCA
ACGATCAAAACAGATTGTCTCCTGAAGATATCGAACGTATGGTCAACGAA
GCTGAACAATTTGCTGACGAAGACAAGAAAGTCAAAGAAAAGGTCGAAGC
TAAGAACGAATTTGAAAGCTATGCTTACTCATTGAAAAACCAAATTGGAG
ATAAGGACAAATTAGGTAGCAAATTGAGCGAAGAAGACAAAGCTGCTTTA
GAAAAAGCTACCGACGAAGCTGTCTCATGGTTGGAAAGCCATGCTGATGC
TTCAACTGAAGAActtaaagaagaaaagaagaaattggAGGATGTAGCCA
CTCCAATTGTTAGTAAAATCTACCAACAACAAGGTGGACAACCAGGAGGA
GAGGGTGAGGCTCCAAACCCAGGATCTGAAGAGAAAGAAGACAAAGATGA
ACTTTAGATCTTTTTATATAGCTAGgtttataaaatttttacaaaattct
ttagTTTAATCTGCGGATATTTCTTGGATGGATTTTGCACCCACAAATTA
CTACTGACACAAAAAGGTTTTTATActtgaatttttaagaaaagtgGTTA
AATTATACGTTGAAAGttcttcaaatttatttattgattttattatcTGT
TTTTGAGGAGACGTAtaattaattcatgatattgtATGTATAATGGATTT
TGTTCCTACAGGTACACAAAagcaaaaaacaaatttctatATTGTTAAAA
TAAAGAGTTTGTTTCACTGTCATTTTTTGCCCTTCTGCGATACTTTTCCG
AAATGCTAGGAGTGGGTTACGAGcggttttaaatattttagagGCTTTTG
TGAGAGACAGGAAAGAAAGGACAGCAAAATTGCACTTTTTCGACAGAAAT
GATCTTAGCTCTTTTATTTTAACCTACAGTAAGCAATCCATTCGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058841-exon-scaffold_314-1491911889:441416..441633 | TCONS_00058841-exon-scaffold_314-1491911889:441416..441633 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1510915933:441416..441633 | TCONS_00058841-exon-scaffold_314-1510915933:441416..441633 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1575043694:441416..441633 | TCONS_00058841-exon-scaffold_314-1575043694:441416..441633 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1491911889:442248..442587 | TCONS_00058841-exon-scaffold_314-1491911889:442248..442587 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1510915933:442248..442587 | TCONS_00058841-exon-scaffold_314-1510915933:442248..442587 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1575043694:442248..442587 | TCONS_00058841-exon-scaffold_314-1575043694:442248..442587 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1491911889:442761..443457 | TCONS_00058841-exon-scaffold_314-1491911889:442761..443457 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1510915933:442761..443457 | TCONS_00058841-exon-scaffold_314-1510915933:442761..443457 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1575043694:442761..443457 | TCONS_00058841-exon-scaffold_314-1575043694:442761..443457 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1491911889:443646..444962 | TCONS_00058841-exon-scaffold_314-1491911889:443646..444962 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1510915933:443646..444962 | TCONS_00058841-exon-scaffold_314-1510915933:443646..444962 | Clytia hemisphaerica | exon |
| TCONS_00058841-exon-scaffold_314-1575043694:443646..444962 | TCONS_00058841-exon-scaffold_314-1575043694:443646..444962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:441416..444962 + |
Blast
BLAST of TCONS_00058841 vs. Swiss-Prot (Human)
Match: GRP78 (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2) HSP 1 Score: 935.25 bits (2416), Expect = 0.000e+0 Identity = 493/609 (80.95%), Postives = 559/609 (91.79%), Query Frame = 1
Query: 175 IGTVVGIDLGTTYSCVGVFKNGRVEIIPNDQGNRITPSYVAFTSEGERLIGDAAKNQLTSNPENTVFDAKRLIGREWSEKSVQSDIKYFPFKVVQKGGKPHITVDVKEGEAKTFAAEEISAMVLNKMKDIAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVSTSGDTHLGGEDFDQRVMEYFVXXXXXXXXXXXXXXNRALQKLRREVEKTKRALSTAHQARVEVESLFDGEDFSETLTRAKFEELNMDLFKSTLKPVKQVLDDSGLKKSEIDEIVLVGGSTRIPKVQSLVKDFFGGKEPSRGINPDEAVAYGAAIQGGILSGEEKL-DIAVIDINPLTLGIETVGGVMTKLIDRNTVVPTKKSQVFSTSADRQPTVTIKVFEGERPMTKDNHLLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILRVSAEDXXXXXXXXXXXXNDQNRLSPEDIERMVNEAEQXXXXXXXXXXXXXXXXXXXSYAYSLKNQIGDKDKLGSKLSEEDKAALEKATDEAVSWLESHADASTXXXXXXXXXXXDVATPIVSKIY 1998
+GTVVGIDLGTTYSCVGVFKNGRVEII NDQGNRITPSYVAFT EGERLIGDAAKNQLTSNPENTVFDAKRLIGR W++ SVQ DIK+ PFKVV+K KP+I VD+ G+ KTFA EEISAMVL KMK+ AEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTI+GLNVMRIINEPTAAAIAYGLDK+EGEKNILVFDLGGGTFDVSLLTIDNGVFEVV+T+GDTHLGGEDFDQRVME+F+K+YKKK GKD+RKDNRA+QKLRREVEK KRALS+ HQAR+E+ES ++GEDFSETLTRAKFEELNMDLF+ST+KPV++VL+DS LKKS+IDEIVLVGGSTRIPK+Q LVK+FF GKEPSRGINPDEAVAYGAA+Q G+LSG++ D+ ++D+ PLTLGIETVGGVMTKLI RNTVVPTKKSQ+FST++D QPTVTIKV+EGERP+TKDNHLLG FDL GIPPAPRGVPQIEVTFEIDVNGILRV+AEDKGTG K KITITNDQNRL+PE+IERMVN+AE+FA+EDKK+KE+++ +NE ESYAYSLKNQIGDK+KLG KLS EDK +EKA +E + WLESH DA E+ K +KK+LE++ PI+SK+Y
Sbjct: 27 VGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635
The following BLAST results are available for this feature:
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