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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058833 ID=TCONS_00058833|Name=TCONS_00058833|organism=Clytia hemisphaerica|type=transcript|length=3620bpRun BLAST on NCBI protein sequence of TCONS_00058833-protein >TCONS_00058833-protein ID=TCONS_00058833-protein|Name=TCONS_00058833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=827bp MANPGNMGMEALIPIVNKLQDAFAQIGIESPIDLPQIAVVGGQSAGKSSVRun BLAST on NCBI transcript from alignment at scaffold_314:405454..432696+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058833 ID=TCONS_00058833|Name=TCONS_00058833|organism=Clytia hemisphaerica|type=transcript|length=27243bp|location=Sequence derived from alignment at scaffold_314:405454..432696+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:405454..432696+ >TCONS_00058833 ID=TCONS_00058833|Name=TCONS_00058833|organism=Clytia hemisphaerica|type=CDS|length=52164bp|location=Sequence derived from alignment at scaffold_314:405454..432696+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058833 vs. Swiss-Prot (Human)
Match: DYN1 (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2) HSP 1 Score: 1048.11 bits (2709), Expect = 0.000e+0 Identity = 504/772 (65.28%), Postives = 624/772 (80.83%), Query Frame = 2
Query: 104 GNMGMEALIPIVNKLQDAFAQIGIESPIDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINGRSEYAEFLHNKTKKYTDFDEVRKEIEAETERVTGKTKNVSPIPINLRVYSPHVLNLTLIDLPGLTKIAVAGQPADIEDQIRDMVLQFVSKDNTLILAVSPANADLANSDALRMAKEVDPTGERTIGVVTKLDLMDEGTDAKDILENKTYPLRRGYIGIVNRSQKDIDGRKDIKAAQAAERKFFLSHSAYRHLADRMGTAFLQKYLNQQLTNHIRECIPALRNKLQGQVLGMEKEVEQYKNFRPDDPTMKTKALMQMLHNYTNDFEKVIDGGSGEGLDTENLSGGAKINRVFHERFPFELVRLQSDEKGLRKKIGIAIKNVHGVRSGLFTPDMAFESIVKVQIEKLKGPALLCVDMVINELTSIVRSCTDKMSKYPALQDEVERICMTHIRGAEMSTKEQVKSLLDFELAYINTQHPDFIGFAEAQNRASGTAGQQQGRRQKVTNQ----VIRKGWLQLGGGGVLK-GSKDYWFVLTAESISWFKDETEHDMKYQLRLDGCQVKDMDSNFLSKKKTFAIFNPDLRNLLKDFKQLELSAESSEVVDNWKASLLRAGVFPER--------DTSEDGDENMGELGNVDPLVERQIETIRNLVDSYLRIVSKNVQDIVPKTCMFMIINAAKEFIAQELLANIYASGNTNELMHESDAEVQRRNEMLRIYQASKEALKIIGDINATTTTTSLPPPVADDGFEV 2380
GN GME LIP+VN+LQDAF+ IG + +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL+LQL+N +EYAEFLH K KK+TDF+EVR EIEAET+RVTG K +SP+PINLRVYSPHVLNLTL+DLPG+TK+ V QP DIE QIRDM++QFV+K+N LILAVSPAN+DLANSDAL++AKEVDP G+RTIGV+TKLDLMDEGTDA+D+LENK PLRRGYIG+VNRSQKDIDG+KDI AA AAERKFFLSH +YRHLADRMGT +LQK LNQQLTNHIR+ +P LRNKLQ Q+L +EKEVE+YKNFRPDDP KTKAL+QM+ + DFEK I+ GSG+ +DT LSGGA+INR+FHERFPFELV+++ DEK LR++I AIKN+HG+R+GLFTPDMAFE+IVK Q++K++ P L CVDMVI+EL S VR CT K+ +YP L++E+ERI THIR E TKEQV L+D ELAY+NT H DFIGFA AQ R++ Q +++ NQ VIRKGWL + G++K GSK+YWFVLTAE++SW+KD+ E + KY L +D +++D++ F+S K FA+FN + RN+ KD++QLEL+ E+ E VD+WKAS LRAGV+PER +T E+G ++ + ++DP +ERQ+ETIRNLVDSY+ IV+K V+D++PKT M ++IN KEFI ELLAN+Y+ G+ N LM ES + QRR+EMLR+Y A KEAL IIGDIN TT +T +PPPV D +V
Sbjct: 2 GNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIE-GSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREPCLKCVDMVISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSN-----QMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSF--MHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQV 765 The following BLAST results are available for this feature:
BLAST of TCONS_00058833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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