TCONS_00058831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058831
Unique NameTCONS_00058831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058831 ID=TCONS_00058831|Name=TCONS_00058831|organism=Clytia hemisphaerica|type=transcript|length=1001bp
TTTTTCTCTGAGGTGTGATTTGGTTGACACTATTATCGACCCAACACAAA
TCCCTAATGCAAGGAACTTTTCTTTAGAGACGAACATCAATTTCCATCTG
ACATGCAGTAAAAGTCGTCAAAAACCAATCATTGCTGTGTTTAACTTACA
ACCCAAGAACTTTGTGGACATCGGTGGTGTTTGTGAATCAGTCTTGTATG
GCATCCCACGCATCATGAAACCGACCAGTTGCTGGAAAATGGACTGGGAC
GAGCTAGAAAACAACCAATCACAGTTCAATGCGTTAAATGCGTACATGAA
AGACAAGTCTTTGGCCTTGGTTCTCGAATCCAAGGAGATCGGACCAATTC
ATTCGAATTTCTTGGTGTTACCATCAACAAATGGAACGATGTTGATCAAA
TCTATAGCTGTCAGGGATATCATGTTATCGCACGCATCTGCTAATGCTAC
TAATGATCAAAGTCTTGATGGTgatgtcaaagaaaaagtctGGAGCGACA
TGAATAAGATTCCAGTGATGAGTGACTACAACCCTTTCAATTATGTCAGC
AACCTGTTCGAAACAGCATTGAACACAGCAACCAATTCAGCAGGTAGCAA
CAGGAAGAAAATAACAAACCAAACAGCAAGGAATATGGAACCGCCACCTA
AGAAACCCAATGTTTCTTACTCAAATTTTGATAAACCTACAGCACGCACC
ATGCCTCAACCAGCATCTGTTCGTCAAATCAAGCCGTTCTCGCCATGGCA
TGCCGCTCCCTGTGTCAACAATGACGATATCGGTCACGTGACAACCAATG
ACGTCATTCCTCCATACACATCGGCATTTTCATCAGCATCTAACCAAGGG
AAAAAGAGAAAACCTCGTTTCGAACCACCTCGAGGTTACAAGCAAACAAA
ACATTAAGAAAACCAGGGTCTCTCAGTGAATTGCAAAATGGTGACGGtgt
attttttggaaattggaCCCTGTTAAAAAGCTGTATGATGTAGTGGTACA
T
Run BLAST on NCBI

transcript from alignment at scaffold_314:400708..403784+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058831 ID=TCONS_00058831|Name=TCONS_00058831|organism=Clytia hemisphaerica|type=transcript|length=3077bp|location=Sequence derived from alignment at scaffold_314:400708..403784+ (Clytia hemisphaerica)
TTTTTCTCTGAGGTGTGATTTGGTTGACACTATTATCGACCCAACACAAA
TCCCTAATGCAAGGAACTTTGTAAGTTTTGTTATTCCCTGGAAAGTTCAT
ATCAGTATAAGCTTATTGGAAGTTATCAAATTGGTTGATCATCCTGGATG
ATTACAACAAAAATTGTAAACACAGAAGCGTCTTGaatgaattttgattt
tataaaaatataagaaatataatgAAATCGCTTCTGTGTTTACAATTTCT
ATTGGAAGTAGTAAGCTCCATAATCCGATGAAGCAACATTTAACAAACTA
TTTTAACTAGGTTTACATTTTCACTTGGTTTTACGTTTTAGTCTTTAGAG
ACGAACATCAATTTCCATCTGACATGCAGTAAAAGTCGTCAAAAACCAAT
CATTGCTGTGTTTAACTTACAACCCAAGAACTTTGTGGACATCGGTGGTG
TTTGTGAATCAGTCTTGTATGGCATCCCACGCATCATGAAACCGACCAGT
TGCTGGAAAATGGACTGGGACGAGCTAGAAAACAACCAATCACAGTTCAA
TGCGTTAAATGCGTACATGAAAGACAAGGTATATTCAAATAAAACTTTGG
AGGAGTTCTATATATTGATCTTTTACCTTTATGTATAACAAGTCAAGCGG
TCACattcagtagcgtggtgggtcgagTAAAATTCGCGCAAATtggggag
gcaattttagaagattttggtttttggcgccccctatgaaaagtaaatat
ctttttaaaactgccaaatctaaggtgtaaaagagcaaaggggCGCTAAA
ATTAGTAAACAGAGGGGTCTATTTGCCCCCTTTTTAATTCGCCTCCCCCC
CCTCCCCAAGATAATCGGCCGGTGGGGGCACTGCCCCCCTGCCACTACGC
TACTGGCCACATTCATAGAAATCTAATCCATTGTTGTGGCAGTCCACGAA
CctatgcaaaatattttttgattagtCTATGTCATACCCTTTTTCTCATC
CTCCAACGAAAAGGTTTCTATTAGGAATATACGaaggaaaatttgagtaa
atcaCTTGGGTGGAATAAGTATATACATTTCACACCTTTGGACATGAATG
ATATTTCCCACTCAGGGAATTTCTTGCATGTTCCAAGGTGCAAAATGTTC
TTCTCCCACCCattgattttctcattttttctgtgatagagAATGTAAAG
CCTGCAAATCAGACTACTGTAACTATGGCAGTGCTTTTTAGTTGCCCAGT
TTTACGAatattttctgatattttgcaccCATGCTAGGAATGGTAGTTAG
TTTCTTAAATCTTTAAGAATGTAGATCTCCACAGAACATTTCACAAagaa
aatttatgcaaattttatGCATTTTCAAATTAGGCTGATACTTTCcaaat
gtttattttatttaaatacTCTAGTCTTTGGCCTTGGTTCTCGAATCCAA
GGAGATCGGACCAATTCATTCGAATTTCTTGGTGTTACCATCAACAAATG
GAACGATGTTGATCAAATCTATAGCTGTCAGGGATATCATGTTATCGCAC
GCATCTGCTAATGCTACTAATGATCAAAGTCTTGATGGTgatgtcaaaga
aaaagtctGGAGCGACATGAATAAGGTGAGCCATCGTGGTTCGTCATCAA
TCACAATCAGGATAAAACTTTGTCAGAAGATGTCAATccaaattttcatg
aaaaatattttaaaaagttattaaTCTTAAGCATCCCGAGGTATGCGAAA
GTAtgatttaaaattaatttgttTCTAGTTTATATGTTTCTATTACCGAT
GTATCAAGATcatttttctcaatattttatCTTTCAGATTCCAGTGATGA
GTGACTACAACCCTTTCAATTATGTCAGCAACCTGTTCGAAACAGCATTG
AACACAGCAACCAATTCAGCAGGTAGCAACAGGAAGAAAATAACAAACCA
AACAGCAAGGAATATGGAACCGCCACCTAAGAAACCCAATGTTTCTTACT
CAAATTTTGATAAACCTACAGCACGCGTAAGTCATTTTTGTGTGAATTAC
TTGTTTTTTTCTCGCAGCTTTCGTACAAGCTCTCCATTTTCGACTCGAAG
TCAGTAGATTTTTCCCAAGAAATCTAGCCTGAGAAAAGTCGAAGAGTCGA
GGTTTCTGTTCGAgatagtaagtaagtctgcgaccgcagtcggaggcgac
ccgaaggctcctctttcgatagctatctacccgaaggtaggggagggcgc
cactctttctcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccactgtactacggtcgctcGA
GATAGAATAAGTTCGAGATAGAATAAGTTGAAGTACAGGATGACGGAGGG
CCAAAGTTGaaaactgttttgatttgaCCCATCATCATTTGTGTCGCTTT
TAAATATGGAAAATAAGACTTTCATTTTGTTATAAAAGTATTTGAAGAGA
TGATTTGGTTTTAGACTGTGGAATTCTTTAATAAAGTTGCAAATTTATCA
TCATCTTATCTCATTCTCTACAGACCATGCCTCAACCAGCATCTGTTCGT
CAAATCAAGCCGTTCTCGCCATGGCATGCCGCTCCCTGTGTCAACAATGA
CGATATCGGTCACGTGACAACCAATGACGTCATTCCTCCATACACATCGG
CATTTTCATCAGCATCTAACCAAGGGAAAAAGAGAAAACCTCGTTTCGAA
CCACCTCGAGGTTACAAGCAAACAAAACATTAAGAAAACCAGGGTCTCTC
AGTGAATTGCAAAATGGTGACGGtgtattttttggaaattggaCCCTGTT
AAAAAGCTGTATGATGTAGTGGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037067XLOC_037067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058831-exon-scaffold_314-1491911889:400708..400777TCONS_00058831-exon-scaffold_314-1491911889:400708..400777Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1510915933:400708..400777TCONS_00058831-exon-scaffold_314-1510915933:400708..400777Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1575043694:400708..400777TCONS_00058831-exon-scaffold_314-1575043694:400708..400777Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1491911889:401049..401285TCONS_00058831-exon-scaffold_314-1491911889:401049..401285Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1510915933:401049..401285TCONS_00058831-exon-scaffold_314-1510915933:401049..401285Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1575043694:401049..401285TCONS_00058831-exon-scaffold_314-1575043694:401049..401285Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1491911889:402132..402332TCONS_00058831-exon-scaffold_314-1491911889:402132..402332Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1510915933:402132..402332TCONS_00058831-exon-scaffold_314-1510915933:402132..402332Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1575043694:402132..402332TCONS_00058831-exon-scaffold_314-1575043694:402132..402332Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1491911889:402545..402733TCONS_00058831-exon-scaffold_314-1491911889:402545..402733Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1510915933:402545..402733TCONS_00058831-exon-scaffold_314-1510915933:402545..402733Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1575043694:402545..402733TCONS_00058831-exon-scaffold_314-1575043694:402545..402733Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1491911889:403481..403784TCONS_00058831-exon-scaffold_314-1491911889:403481..403784Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1510915933:403481..403784TCONS_00058831-exon-scaffold_314-1510915933:403481..403784Clytia hemisphaericaexon
TCONS_00058831-exon-scaffold_314-1575043694:403481..403784TCONS_00058831-exon-scaffold_314-1575043694:403481..403784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:400708..403784 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745019	0.974969	0.82216	1.42324	1.64891	0.0847459	1.97733	1.94116	0.902754	1.553	1.4748	1.23375	1.50792	0.13966	0.789581	2.44536	2.00582	1.777	4.47767	3.15822	1.06636	1.26307	1.49861	1.61593	11.1645	8.81105	0.620348	0.804254	0.659182	0.470352
Blast
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BLAST of TCONS_00058831 vs. Swiss-Prot (Human)
Match: M1AP (Meiosis 1 arrest protein OS=Homo sapiens GN=M1AP PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.950e-24
Identity = 59/197 (29.95%), Postives = 104/197 (52.79%), Query Frame = 2 
Query:    8 LRCDLVDTIIDPTQIPNARNFSLETN------INFHLTCSKSRQKPIIAVFNLQPKNFVDIGGVCESVLYGIPRIMKPTSCWKMDWDELENNQSQFNALNAYMKDKSLALVLESKEIGPIHSN-------FLVLPSTNGTMLIKSIAVRDIMLSHASANATNDQSLDGDVKEKVWSDMNKIPVMSDYNPFNYVSNLF 559
            L+CDL + ++ P+ +    + SL  +      I  +   S+S      + + LQ    +   G+CES+ YG+P I++PTSCW++DWDELE NQ  F+AL   +  +   L+ + +  GP HS        ++++PS + T+L+K++A R++ML         D     D  + V S ++ + +   YNP +  S+L+
Sbjct:  259 LKCDLQERLLCPSLLAGTADGSLRMDDPKGDFITLYQMASQSS----ASHYKLQVIKALKSSGLCESLTYGLPFILRPTSCWQLDWDELETNQQHFHALCHSLLKREWLLLAKGEPPGPGHSQRIPASTFYVIMPSHSLTLLVKAVATRELMLPSTFPLLPEDP--HDDSLKNVESMLDSLELEPTYNPLHVQSHLY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00058831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M1AP3.950e-2429.95Meiosis 1 arrest protein OS=Homo sapiens GN=M1AP P... [more]
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