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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058827 ID=TCONS_00058827|Name=TCONS_00058827|organism=Clytia hemisphaerica|type=transcript|length=684bp
GAAGTTCACGGATTAAGGATtaacgtttttttctttttattcattcatgc
GTGATGAGCAACTTGTAAAACAACGACAGGACGATGAAGACAAATAGAGA
TGTTTCATCAACGAGTCACCAAATCAACGCAACATTCACTAGTACTTAGC
GTACCACCACCATTCTTATACAACCATTGCGTACATACGTACGGTACATA
CAAACTATTTGGATGGCTGGGGACAACGTGTGTGTTgctcaaaagaagaa
aattggACAACAACCTTTTTATAATATAGGTCATGTTCTAGACGTCACGG
TTCCGTATCGTTCCAAAACGAAACGGTTCTGAAACAAGTGTGAATAAGgc
cgaaatttgaaaaagaaaaaaagaagacgttacaaagcaaagcAGATCgg
aacggtttcgctccactattttcatcggaacagaactgctccgttttctt
gctccgaaacgctccgaaaccaatatgaacactatCGCGGAAACACTCAC
GGAAACCATACCGGAATGATACGagaccgtaacgtctgaacatggtctta
cagacaatctttgaaatatatacaattaaaaatatataaaatataataaa
ttATATATAAGGCCATTTGATCATCAATGCATTCCCTCTGTTTTCTTTCT
GAAGGAGATAGAAAGTAGAAAGATTTATTAATAG Run BLAST on NCBI transcript from alignment at scaffold_314:379145..380042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058827 ID=TCONS_00058827|Name=TCONS_00058827|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at scaffold_314:379145..380042+ (Clytia hemisphaerica)
GAAGTTCACGGATTAAGGATtaacgtttttttctttttattcattcatgc
GTGATGAGCAACTTGTAAAACAACGACAGGACGATGAAGACAAATAGAGA
TGTTTCATCAACGAGTCACCAAATCAACGCAACATTCACTAGTACTTAGG
TAGGCAAAAATCCATTCTGGGTATTAAGTTTATCTAGGTAGGTTTCCCCT
CTTTTACCTACCTGAAAATCGTGTATCATTAAACTCTTAAGTGACGTTCA
ATTTATCTGAGCTGACTGAGTAGCTTCGTCAACTGGACGCTATATATCAC
CTGGGTTTTCGTTTTGTACCGAAAAGCTACTTGTATGCCGAATTTCTTGT
TCTATCTTTTTAGCGTACCACCACCATTCTTATACAACCATTGCGTACAT
ACGTACGGTACATACAAACTATTTGGATGGCTGGGGACAACGTGTGTGTT
gctcaaaagaagaaaattggACAACAACCTTTTTATAATATAGGTCATGT
TCTAGACGTCACGGTTCCGTATCGTTCCAAAACGAAACGGTTCTGAAACA
AGTGTGAATAAGgccgaaatttgaaaaagaaaaaaagaagacgttacaaa
gcaaagcAGATCggaacggtttcgctccactattttcatcggaacagaac
tgctccgttttcttgctccgaaacgctccgaaaccaatatgaacactatC
GCGGAAACACTCACGGAAACCATACCGGAATGATACGagaccgtaacgtc
tgaacatggtcttacagacaatctttgaaatatatacaattaaaaatata
taaaatataataaattATATATAAGGCCATTTGATCATCAATGCATTCCC
TCTGTTTTCTTTCTGAAGGAGATAGAAAGTAGAAAGATTTATTAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058827-exon-scaffold_314-1491911889:379145..379293 | TCONS_00058827-exon-scaffold_314-1491911889:379145..379293 | Clytia hemisphaerica | exon |
| TCONS_00058827-exon-scaffold_314-1510915933:379145..379293 | TCONS_00058827-exon-scaffold_314-1510915933:379145..379293 | Clytia hemisphaerica | exon |
| TCONS_00058827-exon-scaffold_314-1575043694:379145..379293 | TCONS_00058827-exon-scaffold_314-1575043694:379145..379293 | Clytia hemisphaerica | exon |
| TCONS_00058827-exon-scaffold_314-1491911889:379508..380042 | TCONS_00058827-exon-scaffold_314-1491911889:379508..380042 | Clytia hemisphaerica | exon |
| TCONS_00058827-exon-scaffold_314-1510915933:379508..380042 | TCONS_00058827-exon-scaffold_314-1510915933:379508..380042 | Clytia hemisphaerica | exon |
| TCONS_00058827-exon-scaffold_314-1575043694:379508..380042 | TCONS_00058827-exon-scaffold_314-1575043694:379508..380042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:379145..380042 + |
Blast
The following BLAST results are available for this feature:
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