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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058823 ID=TCONS_00058823|Name=TCONS_00058823|organism=Clytia hemisphaerica|type=transcript|length=1368bp
ggaaaattgaaatattgaattttgaataaaattttcttgatccttagaaa
aaagtcaaatattGGTACATTTATCTAGTTAGTCTGAAAATATCTCAAAT
CTACATTACAATTTAGTATTTACATACAACGGCAATATTTTACATCATTT
ATCATATTCACAGTATTTTGATTTGCTCAAGTCATTTTGATTCTATTAAT
GACAGGCGCTTGAGTCATCACCAGATCTCAGACTAGACTATATTTTACAA
TCCATAAAGATCATTATAAAGTAAATTTTGCCCTGGAAGAAGAGATATGA
CCTTGCCATTCTACTTCTGTCTATCTTAATTACCACCAGCCATAGATCTC
CCATCTAAAATCCATTAAGCATAAGGTCATGATTTAGAGTCAATTATATG
TTTTTGTGCCTTGATATCCAGGTTTGAAAACGATCTCCAATTCTTTTGGA
TGTGAATCCCAGCAATCATCAGCATTATCACACtgtttcatcaaaaattt
gccatCAGATTTCCGTCTACACAGGATAACATCATGGAAATGGTAATAGA
CTTGTTCGGTACGTTCTATATGAACGAAGTTCTTCTTTTTAGGGTCGTCA
CAATTACTTTTCTTCAACCTTTTGATCATATCACGTTTGAATTTCTCCGG
TGTAATTTTCTTATCATCCTTTGGTTTAAACTCGATTTTGTGAACATGAC
TTTGAAAGGTTGAATCACTAGCCTGCGTTTGAAAGTAAGCAATTATGTCT
TCAAGCTTTTGGATTTTAGGATTTAAATTCATTGCACCTACTGGAGGTGG
TCTTTCATTTTCGAATCGCTTGACatcattttcaatcttcttttgaAGAT
CAAGCAATTTCGTCCACGACTTGTTAATCTTGCTAGTATCTTGTTGGTTC
ATTGGATATGAGATTGCCAAAGATGCAAAGATCACCAATAAAGAGATTGA
TATTGtcttcattttgatatttttgtaattttttgaatCTGTTGTTTTCA
CTAGAAATAAAAGAAGATTAAGACTTGAAGAATTGAACAAAACGATGTTA
CTGTAGTCTGTACTCTTACTGCATTTTTGCTCCAACTAGGAACCATAAAA
TGGTTTATGAACAACGTAAAACAAAGAATTCTTTTTACTCTCTCTTTCAA
GGCCCGCCCATTACCAGTATCTTGATATTCCGACCAAAACAAAGTGCTTA
AGCATTTCATCAAGCCTTAAACAACATTTTAAATTCGAATACCTTTATAT
ATCACCATTTTTCAATCAGAAAAACGATATTTAAATATTTGCTAACGAAT
TGTCAAAGCAACATCTTTGCATCATGTTTATGTTGTCAGTAGATTATCTT
TTGACTGAAGTCGTTGCT Run BLAST on NCBI transcript from alignment at scaffold_314:253360..255452+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058823 ID=TCONS_00058823|Name=TCONS_00058823|organism=Clytia hemisphaerica|type=transcript|length=2093bp|location=Sequence derived from alignment at scaffold_314:253360..255452+ (Clytia hemisphaerica)
ggaaaattgaaatattgaattttgaataaaattttcttgatccttagaaa
aaagtcaaatattGGTACATTTAGCTAGTTAGTCTAGTTAGTCTGAAAAT
ATCTCAAATCTACATTACAATTTAGTATTTACATACAACGGCAATATTTT
ACATCATTTATCATATTCACAGTATTTTGATTTGCTCAAGTCATTTTGAT
TCTATTAATGACAGGCGCTTGAGTCATCACCAGATCTCAGACTAGACTAT
ATTTTACAATCCATAAAGATCATTATAAAGTAAATTTTGCCCTGGAAGAA
GAGATATGACCTTGCCATTCTACTTCTGTCTATCTTAATTACCACCAGCC
ATAGATCTCCCATCTAAAATCCATTAAGNATTTGGgtggggtttatagac
ttccaggccaTATCcagagccctattggaccattcttgaacttttggatc
ctcagatcctaagatcttaagtctcatgttaaaactcagagttaaaactc
cacccttccaacctaactaagagcgcttccaaatcgattgtggctataag
atttcgttggaatttcctttttctcaaatattatggccgGTATTATACCT
TTTCTCTaagatggttaattttcaaacGCCGTCAGGGGTTCACTAcgtgc
gaaaaaaaaaaattatgaccatctgttatcaggttagtaAAATACTTTGA
CAATTCATTGAAGACtggaaaattgaaatattgaattttgaataaaattt
tcttgatccttagaaaaaagtcaaatattGGTACATTTAGCTAGTTAGTC
TAGTTAGTCTGAAAATATCTCAAATCTACATTACAATTTAGTATTTACAT
ACAACGGCAATATTTTACATCATTTATCATATTCACAGTATTTTGATTTG
CTCAAGTCATTTTGATTCTATTAATGACAGGCGCTTGAGTCATCACCAGA
TCTCAGACTAGACTATATTTTACAATCCATAAAGATCATTATAAAGTAAA
TTTTGCCCTGGAAGAAGAGATATGACCTTGCCATTCTACTTCTGTCTATC
TTAATTACCACCAGCCATAGATCTCCCATCTAAAATCCATTAAGCATAAG
GTCATGATTTAGAGTCAATTATATGTTTTTGTGCCTTGATATCCAGGTTT
GAAAACGATCTCCAATTCTTTTGGATGTGAATCCCAGCAATCATCAGCAT
TATCACACtgtttcatcaaaaatttgccatCAGATTTCCGTCTACACAGG
ATAACATCATGGAAATGGTAATAGACTTGTTCGGTACGTTCTATATGAAC
GAAGTTCTTCTTTTTAGGGTCGTCACAATTACTTTTCTTCAACCTTTTGA
TCATATCACGTTTGAATTTCTCCGGTGTAATTTTCTTATCATCCTTTGGT
TTAAACTCGATTTTGTGAACATGACTTTGAAAGGTTGAATCACTAGCCTG
CGTTTGAAAGTAAGCAATTATGTCTTCAAGCTTTTGGATTTTAGGATTTA
AATTCATTGCACCTACTGGAGGTGGTCTTTCATTTTCGAATCGCTTGACa
tcattttcaatcttcttttgaAGATCAAGCAATTTCGTCCACGACTTGTT
AATCTTGCTAGTATCTTGTTGGTTCATTGGATATGAGATTGCCAAAGATG
CAAAGATCACCAATAAAGAGATTGATATTGtcttcattttgatatttttg
taattttttgaatCTGTTGTTTTCACTAGAAATAAAAGAAGATTAAGACT
TGAAGAATTGAACAAAACGATGTTACTGTAGTCTGTACTCTTACTGCATT
TTTGCTCCAACTAGGAACCATAAAATGGTTTATGAACAACGTAAAACAAA
GAATTCTTTTTACTCTCTCTTTCAAGGCCCGCCCATTACCAGTATCTTGA
TATTCCGACCAAAACAAAGTGCTTAAGCATTTCATCAAGCCTTAAACAAC
ATTTTAAATTCGAATACCTTTATATATCACCATTTTTCAATCAGAAAAAC
GATATTTAAATATTTGCTAACGAATTGTCAAAGCAACATCTTTGCATCAT
GTTTATGTTGTCAGTAGATTATCTTTTGACTGAAGTCGTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058823-exon-scaffold_314-1491911889:253360..253432 | TCONS_00058823-exon-scaffold_314-1491911889:253360..253432 | Clytia hemisphaerica | exon |
| TCONS_00058823-exon-scaffold_314-1510915933:253360..253432 | TCONS_00058823-exon-scaffold_314-1510915933:253360..253432 | Clytia hemisphaerica | exon |
| TCONS_00058823-exon-scaffold_314-1575043694:253360..253432 | TCONS_00058823-exon-scaffold_314-1575043694:253360..253432 | Clytia hemisphaerica | exon |
| TCONS_00058823-exon-scaffold_314-1491911889:254158..255452 | TCONS_00058823-exon-scaffold_314-1491911889:254158..255452 | Clytia hemisphaerica | exon |
| TCONS_00058823-exon-scaffold_314-1510915933:254158..255452 | TCONS_00058823-exon-scaffold_314-1510915933:254158..255452 | Clytia hemisphaerica | exon |
| TCONS_00058823-exon-scaffold_314-1575043694:254158..255452 | TCONS_00058823-exon-scaffold_314-1575043694:254158..255452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:253360..255452 + |
Blast
The following BLAST results are available for this feature:
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