TCONS_00058816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058816
Unique NameTCONS_00058816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058816 ID=TCONS_00058816|Name=TCONS_00058816|organism=Clytia hemisphaerica|type=transcript|length=1216bp
tcattttaggaaaaataaattatccGGTAAATTGTAGAAATAAATGTAGT
AATAAATAAATCATTCCTAAAAACTTGAAagaagtgaaaaagaaaatggc
ttAGTAAAAGGAAATAATGGGAATTGACACTTTAAAAGACACAAGGTATA
AAAGGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGGAG
TTATTTGAGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGAT
TGACCAAGTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAGAAACA
ACATCAACAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCT
AAATCTGaaaggtTTGAAATGAAtgctttcaatttcaacaattcttCAAG
AAAATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACTGACTC
TTGCACTGATAGTGATTGGCATTGTTATTATTGTAATCGtatcGATTGTG
ATGAAAAACAAGAAATAAGGCTTTTTGCGAAAACTTAGAAAATCTTTAAG
TGTCATCTTCAAGTGGTAATTTTGTCgtccattttttatattttcttttg
gaTTTGGTGAAAATATTTATTAGAATGCTTGTTATTTAtatgaattattt
tatttactttttactcaATTTAAAATGGCTAATACCTACCTCACACACCC
cttgattttcaatttcatatttcattaataagaatttttgaaatcatatC
TTAGTTTATAAATCTCTATATCTTAATGATTTTAATTTACAATGATTTAT
TATCATAAACATATTGttttacattattttttcaagaaaaatgataaatg
cATTTTCATTTTAGAACCATATCTTTATACCATAGAAAATAGACTATATT
GAATGAATTGTTGAATCTCAGTTGCGGTACAATACATATAAAtaacgtcc
atctaatgttTATAACGTTCATAAAACGCTAAATTAATGTTGGAAAAACG
TTTGTGTGGGAGCTTGAATTGTGTAACTTTTAGATACACATTTTAAAATT
CATAtcatgaaaatcaaatttcatcgaGAGTTAGTGTTTTAAGAAATTCA
TTTAGATTTTCtttaattgaatttttaactcatTTTAGATTATCTTTAAA
TCTTTAGTCAAATCTAGGGATTTAAATTCCAGTTACGTCTGATGACCTTT
ATTGACTTTGCctgac
Run BLAST on NCBI

transcript from alignment at scaffold_314:80546..83964+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058816 ID=TCONS_00058816|Name=TCONS_00058816|organism=Clytia hemisphaerica|type=transcript|length=3419bp|location=Sequence derived from alignment at scaffold_314:80546..83964+ (Clytia hemisphaerica)
tcattttaggaaaaataaattatccGGTAAATTGTAGAAATAAATGTAGT
AATAAATAAATCATTCCTAAAAACTTGAAagaagtgaaaaagaaaatggc
ttAGTAAAAGGTAAGAAgcaatttgccaaatttttacCACCAATAACCAC
TAATTTCATCTCTTGAAAACGTTGATGGGAGAAGAATTTTTCAAGCCATA
GCCAAGTATAATCCTTGTGATCTCAGCTTCAATGAAATAAAATGATAAGA
AGTAATAAATTTGAAATACAGAATGAGACACAAAACACATTCGACTGTTT
TGGTTCACTTAAAATCATGATAAACTTCTGGACACCTATTCAACTACATA
CGATATTGTTGTATCCCCCAGTATTATTTTTAAGTGAATTTTAAGGTTct
atttttaatcatttttcattaattctTGTTTGCGTAGAAAAGGAAATAAT
GGGAATTGACACTTTAAAAGACACAAGGTATAAAAGGGTAAGTTTCTCTC
CAGAAATATCTTATTTTTTAGACAACatagaaataataaaattatattca
tgaaaaatttcaagggtagcatttttaattgtaaagttgagaaaatgttt
tataTTAATTTTGGCACTGCACTTTTTATAGACTCTTCGTTGAATGTCTT
CTGCTTTGCCTCTGCACATATTTGCTTTTTGGGGGATTTTCCAATATCCA
GATATGAACAGTTATGTTTTAGGTGGGTGAATCTTTTTTGTGTGCCAAAT
AACACTAGTTTTGATCTGTGAAACTTGGCTACCCCCATAAAATTTGCTCT
CTTTTATGCTATTCAACAGGAAACTTGCCTTTTGAAATTAGAAAACTTAG
AtcgttttgttttttcttcagaaTGAGGACAGAGATAAGAAGGTATGATA
AAGATAACGAATATGATATTAAACAGTTTTGTAATTGAAATTATACTAAA
TAAATATTCcctttttcaattcttttttaagaatgcactttaaaaattaa
ttatctGTTATCAGTTTTGGGATATTGCAGAGACCAACAATAGTGTCGAA
TTCCGCAATGAAGGTTGTTGAATTGTGCTTATATTTTAGAATTTCACTTC
ACAACTCCAAGACACACAATATACATAGCAATCAATTATGACAATCCTTT
ATCATGCATAATAGTTTATgctttgattcttttttgtgttttttgacTCA
ATATTTTTTCAGACACTTGCTATTCACTTGCTATCAATAGATACCGCTTC
TAAACAATGAGGATGAAAGTGACGATGATGAGGAGTTGTAAGctctgttt
ttttcttcatgttattctgcaaaattttatcACTCTCAtcaacaaatttt
aaaaatctgcaaaatatcTGCTgcttaagattttttttaaagtatagaAA
TCATGTGAGTgtaggtagagagtctatcaccatatttccctaacactcTA
CCTGGAAGAGCTTGGGATTCGAATACGATAAACTCTGTATACATATAGAA
GTCATTTCAACAAATAGTTTCTATTTATCATGTTAACATTCGCATGATCT
ACTGTATGTACATTCTTTTTAGATTTGAGCGCTCCAAACAAGCAGCTAGC
CTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATGGAGC
CATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGCGACC
GTTTAGAAGATCTAGAAGCTAAATCTGGTATGTTTCTTTACAGTGCTATC
ATTTCAAGGATCAAATTAAAGTTATGTCAGGTGCTTCGATTTTTTCCCTG
TTTCAATTTAACAAAGtgctaaaatcataaaaaatgttttcaattttgat
gattAAAATAGAATCATCATTCGACACTGATATATTTAAATCatattcat
cttcatttttagaaaggtTTGAAATGAAtgctttcaatttcaacaattct
tCAAGAAAATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGGTATATTT
TTAATGATAGAACAAAAACGTTTAAGATTTTTATGAATgcttaaatcaat
tttaaatcttaaacTGTTTTGAATTCTctataatttcaaaacttttatat
tttcagtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTTATTAT
TGTAATCGGTAAgtctttttatttaaccatatcCTGAGTCAGCAGATTTA
CTATGTAGGTCATTATAATGAGataaataaatatataataACAATACGAT
AGAAGAAGAGAAGAAGTTTCTCTGATGATGCCAGATTGTGAAGCTAAACT
AATAACAAACCATTAATGTGAACATATTCTTTCTTCTTTGAATTTTCCAT
ATCAATTTGAGCTGGTTGTGTTTTCATTTGTGATTTTGCTCTTATTGAAA
AGGATTAACTTTTGCTTATCCTCGGCATTTCATGTCAGGCACAGACATAG
CAAcagttgttttgtttttcttaattAATATAATACTGATGAAGCTCATT
AAACGAGCAAGCTTCTTAAAATAGATAAGTCTGAATGAACATAGCAGTAG
AAAGTACAATCATACAAAAGTGTTTTTGTGGTAGGGTCAACTTTGACCTA
GATCATATTTTTAATCAAGTAAAAATATCAGTTGTTTCAGAATGTTTGTG
AGGTGACAAtcttattcttttctttttctttttctttttcagtatcGATT
GTGATGAAAAACAAGAAATAAGGCTTTTTGCGAAAACTTAGAAAATCTTT
AAGTGTCATCTTCAAGTGGTAATTTTGTCgtccattttttatattttctt
ttggaTTTGGTGAAAATATTTATTAGAATGCTTGTTATTTAtatgaatta
ttttatttactttttactcaATTTAAAATGGCTAATACCTACCTCACACA
CCCcttgattttcaatttcatatttcattaataagaatttttgaaatcat
atCTTAGTTTATAAATCTCTATATCTTAATGATTTTAATTTACAATGATT
TATTATCATAAACATATTGttttacattattttttcaagaaaaatgataa
atgcATTTTCATTTTAGAACCATATCTTTATACCATAGAAAATAGACTAT
ATTGAATGAATTGTTGAATCTCAGTTGCGGTACAATACATATAAAtaacg
tccatctaatgttTATAACGTTCATAAAACGCTAAATTAATGTTGGAAAA
ACGTTTGTGTGGGAGCTTGAATTGTGTAACTTTTAGATACACATTTTAAA
ATTCATAtcatgaaaatcaaatttcatcgaGAGTTAGTGTTTTAAGAAAT
TCATTTAGATTTTCtttaattgaatttttaactcatTTTAGATTATCTTT
AAATCTTTAGTCAAATCTAGGGATTTAAATTCCAGTTACGTCTGATGACC
TTTATTGACTTTGCctgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037056XLOC_037056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058816-exon-scaffold_314-1491911889:80546..80655TCONS_00058816-exon-scaffold_314-1491911889:80546..80655Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:80546..80655TCONS_00058816-exon-scaffold_314-1510915933:80546..80655Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:80546..80655TCONS_00058816-exon-scaffold_314-1575043694:80546..80655Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:80988..81032TCONS_00058816-exon-scaffold_314-1491911889:80988..81032Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:80988..81032TCONS_00058816-exon-scaffold_314-1510915933:80988..81032Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:80988..81032TCONS_00058816-exon-scaffold_314-1575043694:80988..81032Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:81786..81832TCONS_00058816-exon-scaffold_314-1491911889:81786..81832Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:81786..81832TCONS_00058816-exon-scaffold_314-1510915933:81786..81832Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:81786..81832TCONS_00058816-exon-scaffold_314-1575043694:81786..81832Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:82118..82272TCONS_00058816-exon-scaffold_314-1491911889:82118..82272Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:82118..82272TCONS_00058816-exon-scaffold_314-1510915933:82118..82272Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:82118..82272TCONS_00058816-exon-scaffold_314-1575043694:82118..82272Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:82458..82537TCONS_00058816-exon-scaffold_314-1491911889:82458..82537Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:82458..82537TCONS_00058816-exon-scaffold_314-1510915933:82458..82537Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:82458..82537TCONS_00058816-exon-scaffold_314-1575043694:82458..82537Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:82652..82703TCONS_00058816-exon-scaffold_314-1491911889:82652..82703Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:82652..82703TCONS_00058816-exon-scaffold_314-1510915933:82652..82703Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:82652..82703TCONS_00058816-exon-scaffold_314-1575043694:82652..82703Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1491911889:83238..83964TCONS_00058816-exon-scaffold_314-1491911889:83238..83964Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1510915933:83238..83964TCONS_00058816-exon-scaffold_314-1510915933:83238..83964Clytia hemisphaericaexon
TCONS_00058816-exon-scaffold_314-1575043694:83238..83964TCONS_00058816-exon-scaffold_314-1575043694:83238..83964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:80546..83964 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87864	2.56973	1.23411	0.180202	0.00213887	0.430469	0.0163403	2.56799	11.7409	6.34898	5.72791	6.37276	6.17223	7.52151	4.37764	2.08168	4.24831	6.61182	3.56432	4.68481	6.32398	4.84372	6.47109	5.80997	0.749191	0.50995	4.14592	3.72065	6.01672	1.54275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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