TCONS_00058815 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058815
Unique Name	TCONS_00058815
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1237

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_314:80546..83964+

transcript sequence

>TCONS_00058815 ID=TCONS_00058815|Name=TCONS_00058815|organism=Clytia hemisphaerica|type=transcript|length=1237bp
tcattttaggaaaaataaattatccGGTAAATTGTAGAAATAAATGTAGT
AATAAATAAATCATTCCTAAAAACTTGAAagaagtgaaaaagaaaatggc
ttAGTAAAAGGAAATAATGGGAATTGACACTTTAAAAGACACAAGGTATA
AAAGGaaTGAGGACAGAGATAAGAAGATACCGCTTCTAAACAATGAGGAT
GAAAGTGACGATGATGAGGAGTTATTTGAGCGCTCCAAACAAGCAGCTAG
CCTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATGGAG
CCATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGCGAC
CGTTTAGAAGATCTAGAAGCTAAATCTGaaaggtTTGAAATGAAtgcttt
caatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGCAAA
GTGTTAAGtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTTATT
ATTGTAATCGtatcGATTGTGATGAAAAACAAGAAATAAGGCTTTTTGCG
AAAACTTAGAAAATCTTTAAGTGTCATCTTCAAGTGGTAATTTTGTCgtc
cattttttatattttcttttggaTTTGGTGAAAATATTTATTAGAATGCT
TGTTATTTAtatgaattattttatttactttttactcaATTTAAAATGGC
TAATACCTACCTCACACACCCcttgattttcaatttcatatttcattaat
aagaatttttgaaatcatatCTTAGTTTATAAATCTCTATATCTTAATGA
TTTTAATTTACAATGATTTATTATCATAAACATATTGttttacattattt
tttcaagaaaaatgataaatgcATTTTCATTTTAGAACCATATCTTTATA
CCATAGAAAATAGACTATATTGAATGAATTGTTGAATCTCAGTTGCGGTA
CAATACATATAAAtaacgtccatctaatgttTATAACGTTCATAAAACGC
TAAATTAATGTTGGAAAAACGTTTGTGTGGGAGCTTGAATTGTGTAACTT
TTAGATACACATTTTAAAATTCATAtcatgaaaatcaaatttcatcgaGA
GTTAGTGTTTTAAGAAATTCATTTAGATTTTCtttaattgaatttttaac
tcatTTTAGATTATCTTTAAATCTTTAGTCAAATCTAGGGATTTAAATTC
CAGTTACGTCTGATGACCTTTATTGACTTTGCctgac

Run BLAST on NCBI

transcript from alignment at scaffold_314:80546..83964+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058815 ID=TCONS_00058815|Name=TCONS_00058815|organism=Clytia hemisphaerica|type=transcript|length=3419bp|location=Sequence derived from alignment at scaffold_314:80546..83964+ (Clytia hemisphaerica)
tcattttaggaaaaataaattatccGGTAAATTGTAGAAATAAATGTAGT
AATAAATAAATCATTCCTAAAAACTTGAAagaagtgaaaaagaaaatggc
ttAGTAAAAGGTAAGAAgcaatttgccaaatttttacCACCAATAACCAC
TAATTTCATCTCTTGAAAACGTTGATGGGAGAAGAATTTTTCAAGCCATA
GCCAAGTATAATCCTTGTGATCTCAGCTTCAATGAAATAAAATGATAAGA
AGTAATAAATTTGAAATACAGAATGAGACACAAAACACATTCGACTGTTT
TGGTTCACTTAAAATCATGATAAACTTCTGGACACCTATTCAACTACATA
CGATATTGTTGTATCCCCCAGTATTATTTTTAAGTGAATTTTAAGGTTct
atttttaatcatttttcattaattctTGTTTGCGTAGAAAAGGAAATAAT
GGGAATTGACACTTTAAAAGACACAAGGTATAAAAGGGTAAGTTTCTCTC
CAGAAATATCTTATTTTTTAGACAACatagaaataataaaattatattca
tgaaaaatttcaagggtagcatttttaattgtaaagttgagaaaatgttt
tataTTAATTTTGGCACTGCACTTTTTATAGACTCTTCGTTGAATGTCTT
CTGCTTTGCCTCTGCACATATTTGCTTTTTGGGGGATTTTCCAATATCCA
GATATGAACAGTTATGTTTTAGGTGGGTGAATCTTTTTTGTGTGCCAAAT
AACACTAGTTTTGATCTGTGAAACTTGGCTACCCCCATAAAATTTGCTCT
CTTTTATGCTATTCAACAGGAAACTTGCCTTTTGAAATTAGAAAACTTAG
AtcgttttgttttttcttcagaaTGAGGACAGAGATAAGAAGGTATGATA
AAGATAACGAATATGATATTAAACAGTTTTGTAATTGAAATTATACTAAA
TAAATATTCcctttttcaattcttttttaagaatgcactttaaaaattaa
ttatctGTTATCAGTTTTGGGATATTGCAGAGACCAACAATAGTGTCGAA
TTCCGCAATGAAGGTTGTTGAATTGTGCTTATATTTTAGAATTTCACTTC
ACAACTCCAAGACACACAATATACATAGCAATCAATTATGACAATCCTTT
ATCATGCATAATAGTTTATgctttgattcttttttgtgttttttgacTCA
ATATTTTTTCAGACACTTGCTATTCACTTGCTATCAATAGATACCGCTTC
TAAACAATGAGGATGAAAGTGACGATGATGAGGAGTTGTAAGctctgttt
ttttcttcatgttattctgcaaaattttatcACTCTCAtcaacaaatttt
aaaaatctgcaaaatatcTGCTgcttaagattttttttaaagtatagaAA
TCATGTGAGTgtaggtagagagtctatcaccatatttccctaacactcTA
CCTGGAAGAGCTTGGGATTCGAATACGATAAACTCTGTATACATATAGAA
GTCATTTCAACAAATAGTTTCTATTTATCATGTTAACATTCGCATGATCT
ACTGTATGTACATTCTTTTTAGATTTGAGCGCTCCAAACAAGCAGCTAGC
CTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATGGAGC
CATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGCGACC
GTTTAGAAGATCTAGAAGCTAAATCTGGTATGTTTCTTTACAGTGCTATC
ATTTCAAGGATCAAATTAAAGTTATGTCAGGTGCTTCGATTTTTTCCCTG
TTTCAATTTAACAAAGtgctaaaatcataaaaaatgttttcaattttgat
gattAAAATAGAATCATCATTCGACACTGATATATTTAAATCatattcat
cttcatttttagaaaggtTTGAAATGAAtgctttcaatttcaacaattct
tCAAGAAAATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGGTATATTT
TTAATGATAGAACAAAAACGTTTAAGATTTTTATGAATgcttaaatcaat
tttaaatcttaaacTGTTTTGAATTCTctataatttcaaaacttttatat
tttcagtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTTATTAT
TGTAATCGGTAAgtctttttatttaaccatatcCTGAGTCAGCAGATTTA
CTATGTAGGTCATTATAATGAGataaataaatatataataACAATACGAT
AGAAGAAGAGAAGAAGTTTCTCTGATGATGCCAGATTGTGAAGCTAAACT
AATAACAAACCATTAATGTGAACATATTCTTTCTTCTTTGAATTTTCCAT
ATCAATTTGAGCTGGTTGTGTTTTCATTTGTGATTTTGCTCTTATTGAAA
AGGATTAACTTTTGCTTATCCTCGGCATTTCATGTCAGGCACAGACATAG
CAAcagttgttttgtttttcttaattAATATAATACTGATGAAGCTCATT
AAACGAGCAAGCTTCTTAAAATAGATAAGTCTGAATGAACATAGCAGTAG
AAAGTACAATCATACAAAAGTGTTTTTGTGGTAGGGTCAACTTTGACCTA
GATCATATTTTTAATCAAGTAAAAATATCAGTTGTTTCAGAATGTTTGTG
AGGTGACAAtcttattcttttctttttctttttctttttcagtatcGATT
GTGATGAAAAACAAGAAATAAGGCTTTTTGCGAAAACTTAGAAAATCTTT
AAGTGTCATCTTCAAGTGGTAATTTTGTCgtccattttttatattttctt
ttggaTTTGGTGAAAATATTTATTAGAATGCTTGTTATTTAtatgaatta
ttttatttactttttactcaATTTAAAATGGCTAATACCTACCTCACACA
CCCcttgattttcaatttcatatttcattaataagaatttttgaaatcat
atCTTAGTTTATAAATCTCTATATCTTAATGATTTTAATTTACAATGATT
TATTATCATAAACATATTGttttacattattttttcaagaaaaatgataa
atgcATTTTCATTTTAGAACCATATCTTTATACCATAGAAAATAGACTAT
ATTGAATGAATTGTTGAATCTCAGTTGCGGTACAATACATATAAAtaacg
tccatctaatgttTATAACGTTCATAAAACGCTAAATTAATGTTGGAAAA
ACGTTTGTGTGGGAGCTTGAATTGTGTAACTTTTAGATACACATTTTAAA
ATTCATAtcatgaaaatcaaatttcatcgaGAGTTAGTGTTTTAAGAAAT
TCATTTAGATTTTCtttaattgaatttttaactcatTTTAGATTATCTTT
AAATCTTTAGTCAAATCTAGGGATTTAAATTCCAGTTACGTCTGATGACC
TTTATTGACTTTGCctgac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037056	XLOC_037056	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_314	supercontig	scaffold_314:80546..83964 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1988	11.7714	1.24714	1.39257	6.98496	4.64058	6.9498	3.02197	5.8147	7.79293	9.18405	8.52157	5.81375	3.4726	6.43939	9.97009	6.50528	5.19794	2.02937	3.65917	3.24514	5.75863	22.7149	22.1007	2.29748e-09	1.82261	8.54537	7.26118	10.4088	18.12

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058815 vs. Swiss-Prot (Human)

BLAST of TCONS_00058815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058815 (transcript) - C. hemisphaerica