TCONS_00058813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058813
Unique NameTCONS_00058813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058813 ID=TCONS_00058813|Name=TCONS_00058813|organism=Clytia hemisphaerica|type=transcript|length=1388bp
TCAGTTTGAGAGCAAAATATTAAATCTCACTCCAGTCCTGAGTTTAGTAG
TTTGCTATCAAACTGAGGTCAGCATACATGGTTTTTTTTTCTAACCTTCA
CTGGTGCTCTCTAAGAAGTGGAGTGCATATTGAAGATTCACCACACCTGa
aatgtcattttattgattcattttaggaaaaataaattatccGGTAAATT
GTAGAAATAAATGTAGTAATAAATAAATCATTCCTAAAAACTTGAAagaa
gtgaaaaagaaaatggcttAGTAAAAGAAAAGGAAATAATGGGAATTGAC
ACTTTAAAAGACACAAGGTATAAAAGGATACCGCTTCTAAACAATGAGGA
TGAAAGTGACGATGATGAGGAGTTATTTGAGCGCTCCAAACAAGCAGCTA
GCCTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATGGA
GCCATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGCGA
CCGTTTAGAAGATCTAGAAGCTAAATCTGaaaggtTTGAAATGAAtgctt
tcaatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGCAA
AGTGTTAAGtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTTAT
TATTGTAATCGtatcGATTGTGATGAAAAACAAGAAATAAGGCTTTTTGC
GAAAACTTAGAAAATCTTTAAGTGTCATCTTCAAGTGGTAATTTTGTCgt
ccattttttatattttcttttggaTTTGGTGAAAATATTTATTAGAATGC
TTGTTATTTAtatgaattattttatttactttttactcaATTTAAAATGG
CTAATACCTACCTCACACACCCcttgattttcaatttcatatttcattaa
taagaatttttgaaatcatatCTTAGTTTATAAATCTCTATATCTTAATG
ATTTTAATTTACAATGATTTATTATCATAAACATATTGttttacattatt
ttttcaagaaaaatgataaatgcATTTTCATTTTAGAACCATATCTTTAT
ACCATAGAAAATAGACTATATTGAATGAATTGTTGAATCTCAGTTGCGGT
ACAATACATATAAAtaacgtccatctaatgttTATAACGTTCATAAAACG
CTAAATTAATGTTGGAAAAACGTTTGTGTGGGAGCTTGAATTGTGTAACT
TTTAGATACACATTTTAAAATTCATAtcatgaaaatcaaatttcatcgaG
AGTTAGTGTTTTAAGAAATTCATTTAGATTTTCtttaattgaatttttaa
ctcatTTTAGATTATCTTTAAATCTTTAGTCAAATCTAGGGATTTAAATT
CCAGTTACGTCTGATGACCTTTATTGACTTTGCctgac
Run BLAST on NCBI

transcript from alignment at scaffold_314:80379..83964+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058813 ID=TCONS_00058813|Name=TCONS_00058813|organism=Clytia hemisphaerica|type=transcript|length=3586bp|location=Sequence derived from alignment at scaffold_314:80379..83964+ (Clytia hemisphaerica)
TCAGTTTGAGAGCAAAATATTAAATCTCACTCCAGTCCTGAGTTTAGTAG
TTTGCTATCAAACTGAGGTCAGCATACATGGTTTTTTTTTCTAACCTTCA
CTGGTGCTCTCTAAGAAGTGGAGTGCATATTGAAGATTCACCACACCTGa
aatgtcattttattgattcattttaggaaaaataaattatccGGTAAATT
GTAGAAATAAATGTAGTAATAAATAAATCATTCCTAAAAACTTGAAagaa
gtgaaaaagaaaatggcttAGTAAAAGGTAAGAAgcaatttgccaaattt
ttacCACCAATAACCACTAATTTCATCTCTTGAAAACGTTGATGGGAGAA
GAATTTTTCAAGCCATAGCCAAGTATAATCCTTGTGATCTCAGCTTCAAT
GAAATAAAATGATAAGAAGTAATAAATTTGAAATACAGAATGAGACACAA
AACACATTCGACTGTTTTGGTTCACTTAAAATCATGATAAACTTCTGGAC
ACCTATTCAACTACATACGATATTGTTGTATCCCCCAGTATTATTTTTAA
GTGAATTTTAAGGTTctatttttaatcatttttcattaattctTGTTTGC
GTAGAAAAGGAAATAATGGGAATTGACACTTTAAAAGACACAAGGTATAA
AAGGGTAAGTTTCTCTCCAGAAATATCTTATTTTTTAGACAACatagaaa
taataaaattatattcatgaaaaatttcaagggtagcatttttaattgta
aagttgagaaaatgttttataTTAATTTTGGCACTGCACTTTTTATAGAC
TCTTCGTTGAATGTCTTCTGCTTTGCCTCTGCACATATTTGCTTTTTGGG
GGATTTTCCAATATCCAGATATGAACAGTTATGTTTTAGGTGGGTGAATC
TTTTTTGTGTGCCAAATAACACTAGTTTTGATCTGTGAAACTTGGCTACC
CCCATAAAATTTGCTCTCTTTTATGCTATTCAACAGGAAACTTGCCTTTT
GAAATTAGAAAACTTAGAtcgttttgttttttcttcagaaTGAGGACAGA
GATAAGAAGGTATGATAAAGATAACGAATATGATATTAAACAGTTTTGTA
ATTGAAATTATACTAAATAAATATTCcctttttcaattcttttttaagaa
tgcactttaaaaattaattatctGTTATCAGTTTTGGGATATTGCAGAGA
CCAACAATAGTGTCGAATTCCGCAATGAAGGTTGTTGAATTGTGCTTATA
TTTTAGAATTTCACTTCACAACTCCAAGACACACAATATACATAGCAATC
AATTATGACAATCCTTTATCATGCATAATAGTTTATgctttgattctttt
ttgtgttttttgacTCAATATTTTTTCAGACACTTGCTATTCACTTGCTA
TCAATAGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGG
AGTTGTAAGctctgtttttttcttcatgttattctgcaaaattttatcAC
TCTCAtcaacaaattttaaaaatctgcaaaatatcTGCTgcttaagattt
tttttaaagtatagaAATCATGTGAGTgtaggtagagagtctatcaccat
atttccctaacactcTACCTGGAAGAGCTTGGGATTCGAATACGATAAAC
TCTGTATACATATAGAAGTCATTTCAACAAATAGTTTCTATTTATCATGT
TAACATTCGCATGATCTACTGTATGTACATTCTTTTTAGATTTGAGCGCT
CCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGATTGACCAAGTCAAG
CATGAATTAGATGGAGCCATAGGTGTTATGAGAAACAACATCAACAAAGT
CCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCTAAATCTGGTATGT
TTCTTTACAGTGCTATCATTTCAAGGATCAAATTAAAGTTATGTCAGGTG
CTTCGATTTTTTCCCTGTTTCAATTTAACAAAGtgctaaaatcataaaaa
atgttttcaattttgatgattAAAATAGAATCATCATTCGACACTGATAT
ATTTAAATCatattcatcttcatttttagaaaggtTTGAAATGAAtgctt
tcaatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGCAA
AGTGTTAAGGTATATTTTTAATGATAGAACAAAAACGTTTAAGATTTTTA
TGAATgcttaaatcaattttaaatcttaaacTGTTTTGAATTCTctataa
tttcaaaacttttatattttcagtCAAAACTGACTCTTGCACTGATAGTG
ATTGGCATTGTTATTATTGTAATCGGTAAgtctttttatttaaccatatc
CTGAGTCAGCAGATTTACTATGTAGGTCATTATAATGAGataaataaata
tataataACAATACGATAGAAGAAGAGAAGAAGTTTCTCTGATGATGCCA
GATTGTGAAGCTAAACTAATAACAAACCATTAATGTGAACATATTCTTTC
TTCTTTGAATTTTCCATATCAATTTGAGCTGGTTGTGTTTTCATTTGTGA
TTTTGCTCTTATTGAAAAGGATTAACTTTTGCTTATCCTCGGCATTTCAT
GTCAGGCACAGACATAGCAAcagttgttttgtttttcttaattAATATAA
TACTGATGAAGCTCATTAAACGAGCAAGCTTCTTAAAATAGATAAGTCTG
AATGAACATAGCAGTAGAAAGTACAATCATACAAAAGTGTTTTTGTGGTA
GGGTCAACTTTGACCTAGATCATATTTTTAATCAAGTAAAAATATCAGTT
GTTTCAGAATGTTTGTGAGGTGACAAtcttattcttttctttttcttttt
ctttttcagtatcGATTGTGATGAAAAACAAGAAATAAGGCTTTTTGCGA
AAACTTAGAAAATCTTTAAGTGTCATCTTCAAGTGGTAATTTTGTCgtcc
attttttatattttcttttggaTTTGGTGAAAATATTTATTAGAATGCTT
GTTATTTAtatgaattattttatttactttttactcaATTTAAAATGGCT
AATACCTACCTCACACACCCcttgattttcaatttcatatttcattaata
agaatttttgaaatcatatCTTAGTTTATAAATCTCTATATCTTAATGAT
TTTAATTTACAATGATTTATTATCATAAACATATTGttttacattatttt
ttcaagaaaaatgataaatgcATTTTCATTTTAGAACCATATCTTTATAC
CATAGAAAATAGACTATATTGAATGAATTGTTGAATCTCAGTTGCGGTAC
AATACATATAAAtaacgtccatctaatgttTATAACGTTCATAAAACGCT
AAATTAATGTTGGAAAAACGTTTGTGTGGGAGCTTGAATTGTGTAACTTT
TAGATACACATTTTAAAATTCATAtcatgaaaatcaaatttcatcgaGAG
TTAGTGTTTTAAGAAATTCATTTAGATTTTCtttaattgaatttttaact
catTTTAGATTATCTTTAAATCTTTAGTCAAATCTAGGGATTTAAATTCC
AGTTACGTCTGATGACCTTTATTGACTTTGCctgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037056XLOC_037056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058813-exon-scaffold_314-1491911889:80379..80655TCONS_00058813-exon-scaffold_314-1491911889:80379..80655Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:80379..80655TCONS_00058813-exon-scaffold_314-1510915933:80379..80655Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:80379..80655TCONS_00058813-exon-scaffold_314-1575043694:80379..80655Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:80983..81032TCONS_00058813-exon-scaffold_314-1491911889:80983..81032Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:80983..81032TCONS_00058813-exon-scaffold_314-1510915933:80983..81032Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:80983..81032TCONS_00058813-exon-scaffold_314-1575043694:80983..81032Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:81786..81832TCONS_00058813-exon-scaffold_314-1491911889:81786..81832Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:81786..81832TCONS_00058813-exon-scaffold_314-1510915933:81786..81832Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:81786..81832TCONS_00058813-exon-scaffold_314-1575043694:81786..81832Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:82118..82272TCONS_00058813-exon-scaffold_314-1491911889:82118..82272Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:82118..82272TCONS_00058813-exon-scaffold_314-1510915933:82118..82272Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:82118..82272TCONS_00058813-exon-scaffold_314-1575043694:82118..82272Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:82458..82537TCONS_00058813-exon-scaffold_314-1491911889:82458..82537Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:82458..82537TCONS_00058813-exon-scaffold_314-1510915933:82458..82537Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:82458..82537TCONS_00058813-exon-scaffold_314-1575043694:82458..82537Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:82652..82703TCONS_00058813-exon-scaffold_314-1491911889:82652..82703Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:82652..82703TCONS_00058813-exon-scaffold_314-1510915933:82652..82703Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:82652..82703TCONS_00058813-exon-scaffold_314-1575043694:82652..82703Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1491911889:83238..83964TCONS_00058813-exon-scaffold_314-1491911889:83238..83964Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1510915933:83238..83964TCONS_00058813-exon-scaffold_314-1510915933:83238..83964Clytia hemisphaericaexon
TCONS_00058813-exon-scaffold_314-1575043694:83238..83964TCONS_00058813-exon-scaffold_314-1575043694:83238..83964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:80379..83964 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48867	1.204	0.409041	0	11.0503	6.33879	9.97444	6.98919	4.50293	2.14113	4.1795	1.23511	3.18744	2.42052	1.74283	2.80381	2.00303	0	9.34479e-08	3.27904	0.37573	2.17626e-07	6.28583	3.23887	3.12801	2.12639	3.89474	1.8265	4.14752	4.46035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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