TCONS_00058812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058812
Unique NameTCONS_00058812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058812 ID=TCONS_00058812|Name=TCONS_00058812|organism=Clytia hemisphaerica|type=transcript|length=1169bp
tttttaagttttcttttaggctttgttttataaaaaaaactgatacaaaa
cttacaaaaaaatcatattaaaagaaaagaaaatctaatCTTCCACAGAC
TGTCTGATTTTTGAACAGATTTCATCAACTGCCTGCATGGCAGGGGAAGT
TGAATAATCTTTCATTCCCATACCACGCTCCAAAGCATTTGTCAAAACTG
GATCTAATGGCACACTCCCAAGATATGGAACATTAGTTTGCTCAGCAAGA
GCTTTACCTCCACCACTTGAAAAAATATTAGTGCAGTCTTTGCATGAAGG
GCAAACATATCCACTCATATTCTCAACGATACCCAATATGGGAATGTTTG
TTTTTCTACAGAATGTCAATTCGCGTTTGACATCAGCAGTGGCAACATCT
TGTGGAGTGGTCACCAGAACTGCACCGTCCGGATGTAAAGCTTGTATACC
TTCCACAGTTGAAATATGTTCATCAGAAGTGCCTGGTGGTGTATCAATCA
CCAGATAATCAACATCTTTCCAATAAACGTCGGTCAAAAATTGCTTAATC
ATTGCATTCTTTTTAGGTCCTCTCCACACTACAGCATCCTTTTGATTCTT
CAAGAGGAATGCTATGGACATGACTGACAGATTCTGATTATTATCTGTAT
ACACAGGAACCCATCCTTCAGAACACTGGTGGACATCTTGGTTTTGCAAA
TTCAACATGTGGGGAATACTAGGTCCACACAAGTCCACATCCAagatacc
aacttttttaccCGCTTGTACAAGAGATAATGCTATTTGTGTTGTTATTG
TACTTTTACCAACCCCTCCCTTTCCTGATAATACCATGATGACATGTTTT
ATTGATTTCAAGTTTTCACTCATATTCAAGTTCTAAATAAATAtctatta
taaatattttcatttcaaagtttttgcgcaaaaaagtaaaacataaaaaa
tgggCCCTCCAGTAGAGAGATTGAAACAATTATGACCATGCAAAGAAAAT
CTACTGCTAATTATTAATCTGTCTAGTTTGAAACGCatgtcaacaggtca
caggtcagtttagacaggtcagctttaattactgtaaaacactgagagaa
tgtttgaaaaccaaaatttcaagtcaaaagcaaCAGTAGCTCCTGAGTTC
TGGTAGGCTAGGGTTTACA
Run BLAST on NCBI

transcript from alignment at scaffold_314:59162..60388+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058812 ID=TCONS_00058812|Name=TCONS_00058812|organism=Clytia hemisphaerica|type=transcript|length=1227bp|location=Sequence derived from alignment at scaffold_314:59162..60388+ (Clytia hemisphaerica)
tttttaagttttcttttaggctttgttttataaaaaaaactgatacaaaa
cttacaaaaaaatcatattaaaagaaaagaaaatctaatCTTCCACAGAC
TGTCTGATTTTTGAACAGATTTCATCAACTGCCTGCATGGCAGGGGAAGT
TGAATAATCTTTCATTCCCATACCACGCTCCAAAGCATTTGTCAAAACTG
GATCTAATGGCACACTCCCAAGATATGGAACATTAGTTTGCTCAGCAAGA
GCTTTACCTCCACCACTTGAAAAAATATTAGTGCAGTCTTTGCATGAAGG
GCAAACATATCCACTCATATTCTCAACAATNTATATTAGTACAGTCTTTG
CATGAAGGGCAAACATATCCACTCATATTCTCAACGATACCCAATATGGG
AATGTTTGTTTTTCTACAGAATGTCAATTCGCGTTTGACATCAGCAGTGG
CAACATCTTGTGGAGTGGTCACCAGAACTGCACCGTCCGGATGTAAAGCT
TGTATACCTTCCACAGTTGAAATATGTTCATCAGAAGTGCCTGGTGGTGT
ATCAATCACCAGATAATCAACATCTTTCCAATAAACGTCGGTCAAAAATT
GCTTAATCATTGCATTCTTTTTAGGTCCTCTCCACACTACAGCATCCTTT
TGATTCTTCAAGAGGAATGCTATGGACATGACTGACAGATTCTGATTATT
ATCTGTATACACAGGAACCCATCCTTCAGAACACTGGTGGACATCTTGGT
TTTGCAAATTCAACATGTGGGGAATACTAGGTCCACACAAGTCCACATCC
AagataccaacttttttaccCGCTTGTACAAGAGATAATGCTATTTGTGT
TGTTATTGTACTTTTACCAACCCCTCCCTTTCCTGATAATACCATGATGA
CATGTTTTATTGATTTCAAGTTTTCACTCATATTCAAGTTCTAAATAAAT
Atctattataaatattttcatttcaaagtttttgcgcaaaaaagtaaaac
ataaaaaatgggCCCTCCAGTAGAGAGATTGAAACAATTATGACCATGCA
AAGAAAATCTACTGCTAATTATTAATCTGTCTAGTTTGAAACGCatgtca
acaggtcacaggtcagtttagacaggtcagctttaattactgtaaaacac
tgagagaatgtttgaaaaccaaaatttcaagtcaaaagcaaCAGTAGCTC
CTGAGTTCTGGTAGGCTAGGGTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037055XLOC_037055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058812-exon-scaffold_314-1491911889:59162..59467TCONS_00058812-exon-scaffold_314-1491911889:59162..59467Clytia hemisphaericaexon
TCONS_00058812-exon-scaffold_314-1510915933:59162..59467TCONS_00058812-exon-scaffold_314-1510915933:59162..59467Clytia hemisphaericaexon
TCONS_00058812-exon-scaffold_314-1575043694:59162..59467TCONS_00058812-exon-scaffold_314-1575043694:59162..59467Clytia hemisphaericaexon
TCONS_00058812-exon-scaffold_314-1491911889:59526..60388TCONS_00058812-exon-scaffold_314-1491911889:59526..60388Clytia hemisphaericaexon
TCONS_00058812-exon-scaffold_314-1510915933:59526..60388TCONS_00058812-exon-scaffold_314-1510915933:59526..60388Clytia hemisphaericaexon
TCONS_00058812-exon-scaffold_314-1575043694:59526..60388TCONS_00058812-exon-scaffold_314-1575043694:59526..60388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:59162..60388 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5215	14.0548	10.8793	10.2343	19.0877	14.1381	23.6138	27.4892	30.4258	25.7678	18.9079	18.1394	22.7103	24.9632	24.6152	27.9698	31.377	26.2174	13.514	13.4015	23.5468	21.0186	35.3815	33.4767	11.0702	12.5003	18.496	19.1986	22.8882	25.2836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033756YlxH/NBP35
IPR000808Mrp_CS
IPR028600NUBP2/Cfd1_eukaryotes
IPR019591Mrp/NBP35_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:00515394 iron, 4 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00058812 vs. Swiss-Prot (Human)
Match: NUBP2 (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 1.240e-116
Identity = 153/254 (60.24%), Postives = 199/254 (78.35%), Query Frame = -3 
Query:  106 NLKSIKHVIMVLSGKGGVGKSTITTQIALSLVQAGKKVGILDVDLCGPSIPHMLNLQNQDVHQCSEGWVPVYTDNNQNLSVMSIAFLLKNQKDAVVWRGPKKNAMIKQFLTDVYWKDVDYLVIDTPPGTSDEHISTVEGIQALHPDGAVLVTTPQDVATADVKRELTFCRKTNIPILGIVENMSGYVCPSCKDCTNIFSSGGGKALAEQTNVPYLGSVPLDPVLTNALERGMG-MKDYSTSPAMQAVDEICSKI 864
            NL  ++H+I+VLSGKGGVGKSTI+T++AL+L  AGKKVGILDVDLCGPSIP ML  Q + VHQC  GW PV+ D  Q++S+MS+ FLL+   +AVVWRGPKKNA+IKQF++DV W ++DYLV+DTPPGTSDEH++T+E ++   P GA++VTTPQ V+  DV+RELTFCRKT + ++GIVENMSG+ CP C +CT++FS GGG+ LA+   VP+LGSVPLDP L   LE G   ++++  SPA  A+  I  KI
Sbjct:    9 NLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKI 262
The following BLAST results are available for this feature:
BLAST of TCONS_00058812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUBP21.240e-11660.24Cytosolic Fe-S cluster assembly factor NUBP2 OS=Ho... [more]
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