TCONS_00058789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058789
Unique NameTCONS_00058789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058789 ID=TCONS_00058789|Name=TCONS_00058789|organism=Clytia hemisphaerica|type=transcript|length=841bp
CTCTTAAACATATAGATTTCTTTGTCCAAAAGTAAAATGGAAATATTACA
ATCGGCTCTATGggccaattaaaaaaaacacctaACAATCtaaaataata
ttaaaaattctGCGAATAATAATTTTCTAATTATTTACAATTTTCATACA
TCTACGATATCTTCTTCATTAATAATAGCTTTGGATAAAAAAAAATGAGC
GTATAATGCATAATGAGTAACATAATAAAGTCAACATTTTCTTTCCATTa
tagaataaaaattttaaaccagAACTTGACCCAGAAAAAATACCTATTTT
GGGTCCAGCCAAAATTCTACAAAACTAACCAAATTACACTACATTACATT
ACCCTTTTGAGAATAGAATGAAATTTTCCCCAAGGAAATCTTACAAAGTC
TAAAAGTGTCGAAATTTGATATATTGATTTAAATCTTACTTAGTCGGAGT
TTCAGCCCTCTACAAAGCGTAGAATGAATTCGTTAGTGGCCTAAAACATA
CTTGTATTCAAATTACCTCAAGAATATATTTTCTAAAgtgaaatattaaa
aattcctCTAAACACTAACAAACTACACAcataaaaatgcaataaaattt
gaatagagtataaaaacatataaaaatacAGAACAATACAAACTTCAAAA
ACAATAATGCAATACTAATTCATAgtaaaaaaagttctaaaattcaGTTT
AAATTCTATTGATTGGCAGCTCAATTCGATCACtgacaatacacgttttt
tttttataaggaacacgtttataaggaactcgaggctgaaaatggttcaa
aaaataaggaattgttaaggaactgctcaggctgagaataa
Run BLAST on NCBI

transcript from alignment at scaffold_313:185561..186401

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058789 ID=TCONS_00058789|Name=TCONS_00058789|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_313:185561..186401 (Clytia hemisphaerica)
ttattctcagcctgagcagttccttaacaattccttattttttgaaccat
tttcagcctcgagttccttataaacgtgttccttataaaaaaaaaacgtg
tattgtcaGTGATCGAATTGAGCTGCCAATCAATAGAATTTAAACtgaat
tttagaactttttttacTATGAATTAGTATTGCATTATTGTTTTTGAAGT
TTGTATTGTTCTgtatttttatatgtttttatactctattcaaattttat
tgcatttttatgTGTGTAGTTTGTTAGTGTTTAGaggaatttttaatatt
tcacTTTAGAAAATATATTCTTGAGGTAATTTGAATACAAGTATGTTTTA
GGCCACTAACGAATTCATTCTACGCTTTGTAGAGGGCTGAAACTCCGACT
AAGTAAGATTTAAATCAATATATCAAATTTCGACACTTTTAGACTTTGTA
AGATTTCCTTGGGGAAAATTTCATTCTATTCTCAAAAGGGTAATGTAATG
TAGTGTAATTTGGTTAGTTTTGTAGAATTTTGGCTGGACCCAAAATAGGT
ATTTTTTCTGGGTCAAGTTctggtttaaaatttttattctatAATGGAAA
GAAAATGTTGACTTTATTATGTTACTCATTATGCATTATACGCTCATTTT
TTTTTATCCAAAGCTATTATTAATGAAGAAGATATCGTAGATGTATGAAA
ATTGTAAATAATTAGAAAATTATTATTCGCagaatttttaatattatttt
aGATTGTtaggtgttttttttaattggccCATAGAGCCGATTGTAATATT
TCCATTTTACTTTTGGACAAAGAAATCTATATGTTTAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037032XLOC_037032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058789-exon-scaffold_313-1491911889:185561..186401TCONS_00058789-exon-scaffold_313-1491911889:185561..186401Clytia hemisphaericaexon
TCONS_00058789-exon-scaffold_313-1510915933:185561..186401TCONS_00058789-exon-scaffold_313-1510915933:185561..186401Clytia hemisphaericaexon
TCONS_00058789-exon-scaffold_313-1575043694:185561..186401TCONS_00058789-exon-scaffold_313-1575043694:185561..186401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:185561..186401 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.342794	0	0	1.10809	0.739412	3.16277	3.78625	3.08991	3.11959	2.69939	2.30033	1.18981	2.33864	4.18499	3.72079	4.22715	4.011	1.17445	1.43036	3.29947	3.982	2.84169	4.21058	1.23207	0.940569	7.78308	6.28848	17.3069	12.6918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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