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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058771 ID=TCONS_00058771|Name=TCONS_00058771|organism=Clytia hemisphaerica|type=transcript|length=612bp
ATTTCATAGAGTGAAACCAATGTGTATGAAACTTTAGGAAAAGAATTTAC
TCTAGGAAACTTCGAATTCACAGATATCACTATTTCTCTTGCTGCCTCTA
GCGAGTTAGATTAGAGGTCAGTGTTgatctgaagaagaaaaatggcTGCG
CTTCGATTGGCATCAATTTCCAAACAACTGAGAGAAGTTAGAATCCACCT
CTGCCAAACATCTTCTTCAAGTTTGGGAGTTAGaAACTTCATTGAGAATC
ACTATGTCAGCTTAAAGAAAGAGAATCCTGATATGCCATTCTTAGTTCGT
GAATGCAGTGGAATAGAGCCAAAGATGACTGCTAGATTTGATTTCGGTTT
GGAGAAGAGTGTTTCATTGAGCGATCAAGATTCATCCCAAGTTTTAAAAT
CTCTAGAAAATCTGGCGAAGAATGCTTAAGTCTtagtttttgtatatttt
tttagaattcCATTGTGTAAATATAGTGTTTACAAATTATCGTAAAAATT
AAAAGAAGTTGTTGaatattttcaatcttcataTTAAGAAGTCAGGTTTG
ATTCAATTGTGTAGGACAGTAGTTGTCTCAAACCCGTTGATTTGGATAAT
GTGGCTTAAAAA Run BLAST on NCBI transcript from alignment at scaffold_313:585458..590474- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058771 ID=TCONS_00058771|Name=TCONS_00058771|organism=Clytia hemisphaerica|type=transcript|length=5017bp|location=Sequence derived from alignment at scaffold_313:585458..590474- (Clytia hemisphaerica)
ATTTCATAGAGTGAAACCAATGTGTATGAAACTTTAGGAAAAGAATTTAC
TCTAGGAAACTTCGAATTCACAGATATCACTATTTCTCTTGCTGCCTCTA
GCGAGTTAGATTAGAGGTCAGTGTTGATCTGAAGAAGAAAAATGGCTGCG
CTTCGATTGGCATCAATTTCCAAACAACTGAGAGAAGTTAGAATCCACCT
CTGCCAAACATCTTCTTCAAGTTTGGGAGTTAGGTAAGATTGATAATATT
AGAATATATATTTTTCGTAATAAATCAATAAATGCCGTGTGATTGTTTAA
AAAGAAGTATCAAATGAAGGTAAAGCGCTTTCATCCAATAATCAGAAATG
ATTCTTTGAAGAAATAACGCTTGCATCTAATTCTTGCTTTCGTTTGAGAA
CTAAAGAAAAGAAAAATTTCATTGTTTCATTGTTTTAAGACTGAAGTTTT
TAATGGGCCATGCCAGAATTTGTCTGTAACAGGGGGGCGGACGACACACC
AGGATTTCCGAGGGCAAAAAAGGATACGATACCAGGCCATTTTTTATGCC
CTTTTTTTTATACCCTTCATCAGACGTTGCCCCTCCTGAAATCACTAAAA
TTTTGGTAAAAGCAGCCTTTTTAGCGGAAAAACACAAGAAAAAGTGCCCT
TTTGTGGCGACCAATGGACGCTGTCCTGCCTTTCTAAAATATGGCCTGGA
TACGTAGCTCCGCTCGCAGCTCTACTCTTCCATTTTTGTTTGATTTAACT
TTGTATTTTAATGACCAGAACACAGTCAAAAATAAAGGGGGGTTTTGTGA
CATTTCTACCTTCTGTCATATCTGATACCATATCTGGTGGAATTTTGAGG
TTACCATGTCAAAACTTTGAAGAACTCAAGTATAGAAATTTCTCGTTGTT
TTAGAAGAAACACGAATTTAAGAGGTTACTTCAATCCTGAATAATACTTA
GAAATATGATGTGGTTAAAGTGAGGTTACCCAAATGAGGTTACCTCATTC
TAAAGCTTATAAATCAATACCTACTGAAGCAAAATTGCTCAAAATTTAAA
TATGCCTCAAGTAGGCCTCATTCTAAGCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAACTAATTTGGATTTCT
TATAAGCTGTATTTTTGGGGCTAAATTGAGGTTACCAATTCACAATTTTC
ATAAACCCCTTTATCATCTAATTGGCTTCAAAAAAAAGTGGATATTTTGT
TGGCAATTGGTTTGATAAAGGTAATAGAAGCAAAATTCATCATGGAAAAT
TATGCCTGATAAACAAAAAGGTTGTATATTTAAGGTTACTCTTGTAGAAA
AGTACCATTTTCACTGTAATCCTGTGTTAAGCTAAAGCTAATGAGGCTAT
TAATCAAAGATCAATATTATTTGTTTTGCATGACTATAACATCAAATCAT
AAACTAAATCACATCTCAAGATGGATTATTAGAAGTAGAAGAAATCAGAA
TCTTTAAAATTCAAATTTTGATGGGTTTTTGAGATTACTACAATCCACCA
AAAAGTAACCTCAAAAATCACACCAAATCTTCAAATTTTCGCACTTTTTT
TGACCAAGTGTTGCCATGTCAGTATAGAGTATGCTCTCTAGTTTTTAGAG
ATTAAAATAGTTTTTACTAAAAGATGTGGTGTTTCAAAGGTTACCCTATA
AAAATGATGGTAACCTCAAAAATACCCCATAAAATCTTCCGAAAAATTTA
TGACAATAGGNNTTTTGTTTGATTTAACTTTGTATTTTAATGACCAGCCA
GGTCATTCATTTGAGGGCTATGCAAGTTTCCCTCCACTGATGCAAGTTAC
CCGACTTCAGGGCACAAAATAGTATTATCATGAAAATTTTTAAATAATAT
GTCTTTGAAAGCAAGTGGAAAGCACATGGTTAGATTTTGACGTTTTAGAT
AGTCATACGTGGATAAATTACCTTTATATTGATTTTTTCGATAATTTTTA
GCATTTTTAAAACATTTTTTGTTTGAATTACTTTGATCAGAGCTGCCCCG
TCACCCCGTGACCTGTAACCTGTGCTCTGGACCTGTGCTCCGTGACCCAT
GTTTCGAACTAGCCGCTTATTGACTTAGTTCCGCATATCAACCTACTACC
TTCAGTCCAGAAAGCGTTATAGCATGCCAATTTGGGATAATGTCAATTTG
AACAAAACATGTTTATAGGTGATATTTAATTTCCCGCTAGACACACCTTG
TCTAGTTCCATTGTAGCAACTATCTGGTCTTTAAAGTAATTATAAATGAA
ACCTTAAATTAACAAATTAAGCTGTTTAAAAAAATCACTAACTACTTTAC
TCGGGTGAAACAAGGCATGTCCCAAATATATTTTTCGTGACGCACACTGC
TTCCCATTATTCATTAACTTTCATATATAGCTAAAAAGAATCGTATCAAC
GAGAGGATTTCGAAAAGTGCTGGGTCAAAAATTTACATTAAGCCAATCTT
AAGATATTGGCCAAAAACTGATTTTGACGTTATAAAATACATCGAAAAAA
CACGTCAAAAAGACAATTTTTTAAAATGACGTCATTATTGAAAAAGGCGA
TAATTCCGATTAATTTACTAAATCAAAGCAAAATTTTGACTGGAGATGTA
AATTAACGATTCTAAAATATTTCATGAAAAAAATCTTGAAAATTCATGAT
GACGTCAGCATTTTTTGTCGTATTTTAATTTTTCCCGACAAATGACGTCA
TTCAAATTTTCTGAGAATTTTTAACAAATATTTCAGAATCATTGGTTTAC
AACTCCAGTCAAAATTTGGTGTTAGTTGCATTAATAAAATTGAAGTTATC
GCTGTTTTTCAATAATAACGTCATTTGAATCTTACTTATGACGTATTTTT
TCGATGTATTTTATAACGTCAAAATCAATTTTTGACCGATATCTTGAGAT
TGGCTTAATGCAAATTTTTGACCCAGCACTTTTCGAAATCTGCTCGTTGA
TATGATTCTTTTGAGCTATATATGAACATTAAGGAATAATTGGACGCTGT
GCGCGTCACGCAAAATATATTTGGGACATGCCTTGTTTCCCCCGAGTAAC
AACTTTGTAGACCAGATAGTTGTTATGGCGTAATTAGACAAGGTATGTCG
ACATTACACAAATCTATGGTGTAATTAGTTGTGCAATATATCGTCATGTG
CAAAAGGAGTATTACACAACATGACATTTTGCCTAGCAGAAGGTCTATAT
ATGATTTTTTAAGAGAGTTGACCTTTTTGATTTCGAATAACCCCCATGCA
ATTGCAAGGATATCCCTGACTGACAATGCTGTGCTCAGCGAATCATAAAA
ATATTGGATTTTATCTTTTTCAGAAACTTCATTGAGAATCACTATGTCAG
CTTAAAGAAAGAGAATCCTGATATGCCATTCTTAGTTCGTGAATGCAGTG
GAATAGAGCCAAAGATGACTGCTAGATTTGGTGAGACTTTTTCTACTACC
ACCGTTTGCTTGAATGAGTGTGCTTCTGCAGCCAAATCAACTTCTTCACT
TCTCTTCTCTACTTCTCTGCTACTCTGAATTTCAGTCATTCTTCTTTGTA
GATGTTTTTTTTTCTTTTTTGAATTATGATAATTATCTTTGTTTTTAGGG
ATTTTTACGGTAATCTTTTTTGTGGTTATAATGGATTTCTCTGAAGATCT
GACCTTGTATATCTAATATTTGAACTCTGTGAAGGAGATATGCATTTATT
AAAAGCAGAGAAGCAGAATTAAAGATCTAAGAGACAGAGATTCTAGTTTG
AAAAGCTGAGATGTAAATCTGAGAAGGAGAGACACAGGGGTGAAACACTA
AATGGTCGTTTGGCTGTAAAGGTACACTTATCTGCTTGGCCTTTTCTTCG
AAAGAAATTGTTTAAAAGACAAATTTTTTAGTGCAACTTTTGTTGTCTAA
AGAATTACGAGGACCTCCACTCATCACTATCATTGAGTTTCAAGCCCGAA
GGACTACAGGTGAAACTTCTAACCCTTCTCAGGCAAGAGAAATTGAAGCC
ACTTGTTTCCCATTCAAAACGCGCATAGAACGCACAGAGATTGTATCTAC
AATCCTTCAAGAAATATTCGAGACAAAGGGGAATTCCCGGTGTAATTTTG
AACACCACAATTGATTTTTAAGCGCCTTAAACTACAGTTGGAAAGTAGAG
TTTTAACTCTGAGTTTTAACATGAGACTTAAGACTTAGGAGGACCTTAGG
ATCTCAGGATTTAAAAGTNAATGCTGTGCTCAGCGAATCATAAAAATATT
GGATTTTATCTTTTTCAGAAACTTCATTGAGAATCACTATGTCAGCTTAA
AGAAAGAGAATCCTGATATGCCATTCTTAGTTCGTGAATGCAGTGGAATA
GAGCCAAAGATGACTGCTAGATTTGGTGAGACTTTTTCTACTACCACCGT
TTGCTTGAATGAGTGTGCTTCTGCAGCCAAATCAACTTCTTCACTTCTCT
TCTCTACTTCTCTGCTACTCTGAATTTCAGTCATTCTTCTTTGTAGATGT
TTTTTTTTCTTTTTTGAATTATGATAATTATCNAGTGCTAAAATAGCAAT
TCTCGCCCGAACTTTAAATTCTGAAAAACGTTAAAATACACTAAAATCTC
AATATATTTCAAGGGAGATTGTAGCGGTTCCTTTGTTTTGGAGGACTACA
TTTCATTTTTTCGCGATATATATTTATTGAATTTTCTCTTTTCAGATTTC
GGTTTGGAGAAGAGTGTTTCATTGAGCGATCAAGATTCATCCCAAGTTTT
AAAATCTCTAGAAAATCTGGCGAAGAATGCTTAAGTCTTAGTTTTTGTAT
ATTTTTTTAGAATTCCATTGTGTAAATATAGTGTTTACAAATTATCGTAA
AAATTAAAAGAAGTTGTTGAATATTTTCAATCTTCATATTAAGAAGTCAG
GTTTGATTCAATTGTGTAGGACAGTAGTTGTCTCAAACCCGTTGATTTGG
ATAATGTGGCTTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00058771-exon-scaffold_313-1575043694:590242..590474 | TCONS_00058771-exon-scaffold_313-1575043694:590242..590474 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1575043694:586050..586156 | TCONS_00058771-exon-scaffold_313-1575043694:586050..586156 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1575043694:585458..585729 | TCONS_00058771-exon-scaffold_313-1575043694:585458..585729 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1510915933:590242..590474 | TCONS_00058771-exon-scaffold_313-1510915933:590242..590474 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1510915933:586050..586156 | TCONS_00058771-exon-scaffold_313-1510915933:586050..586156 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1510915933:585458..585729 | TCONS_00058771-exon-scaffold_313-1510915933:585458..585729 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1491911889:590242..590474 | TCONS_00058771-exon-scaffold_313-1491911889:590242..590474 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1491911889:586050..586156 | TCONS_00058771-exon-scaffold_313-1491911889:586050..586156 | Clytia hemisphaerica | exon |
| TCONS_00058771-exon-scaffold_313-1491911889:585458..585729 | TCONS_00058771-exon-scaffold_313-1491911889:585458..585729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:585458..590474 - |
Blast
BLAST of TCONS_00058771 vs. Swiss-Prot (Human)
Match: NDUA2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-23 Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 145 AALRLASISKQLREVRIHLCQTSSSSLGVRNFIENHYVSLKKENPDMPFLVRECSGIEPKMTARFDFGLEXXXXXXXXXXXXXXXXLENL 414
AA R LRE+RIHLCQ S S GVR+FIE YV LKK NPD+P L+RECS ++PK+ AR+ FG E +V L++ + QV ++LEN+
Sbjct: 5 AASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENV 94
The following BLAST results are available for this feature:
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