TCONS_00058769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058769
Unique NameTCONS_00058769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058769 ID=TCONS_00058769|Name=TCONS_00058769|organism=Clytia hemisphaerica|type=transcript|length=2192bp
GTTTACTTTATTTCCAAAGACTATACAGAAAACAGTCTACTAAGCAATAA
GACATTTCGAAGAGTTGGCAGATTTAAcaacaaataaaaattcagTATCC
CCAACATCTCTTAACAGAGTTTTTTTATTGATaccatttttcttcaaaaa
tggaaCACCACAATGAGAATTATCACGTTTTATGTCCTCAATAAGGTTCT
CGACAGTATCAAGCTCCAAATTATTTACTCCGTACTCGATCTTTCTCGTC
TCTCCTTCTTGGTCTGTCAGCGAGATTGAAACACGTTTACTAACCTTGAT
AAGGTCATGGTTTTCACCTTCCCAGTAACAATCGTATAGAGAAATATTTT
CCTGCGTGATTCCATATATACTATGAATATTGATCAAGAGTGAAGGAATG
TCTGTGTGCTCGCTTACGATCTCTTTCAATCGAGTTATGGAATCTGTTAC
CAAAACTTTCACTCTCAATTGTCCATTGAGTATGTTACCATGTAAACATA
GTTCAATCTCCTTCGCTTGTTTTACTATCAATGTAAAAGTAATAGATTGG
CGATTCATTAAAGGATTCAAACTAACTTTGTCTCATCACTGAGTTCTGCC
GCATTTTCAAGATATAATGCTTGCAGGAGTTGCGGAATGTCTTTCAATTG
ATGAATGTGATCTTTAACCTCCTTTAATGTCGAAATCTTATTCGAAATCA
CATCAACGGTGAATTTTCCAGTCAAAAAATTGATATGAActtctttgaaa
tatttcaagccgtgttttttacaaaatctaTCCACGTTCGGAGCATCTTG
TTTGTCAGATGGACTAACCAGTAATGTTATACAAAGGTCTTCACTGAAAC
GATTCTCATCATCTACAAAAAGATTATAAAGATTGAAATCGTATTGAAAT
TCTTCTTCATTACGCATCAGATATAAGCAACTCATTGAGAGATCCTGGTT
TTCCTTTCGGATCCACTCATATATCATATCTAAGGGTATATTGCCATTCT
TAGAAAGCGGTAAATCAAACAAGACCGAACCATCACTAGGACTGTTGATG
ATAATTGAACGTATTCGACTTATCTCAAATCTATGAATAATCTCCAATAA
CTCCATCTCATTATCATCTATCTGAACAGCCAAGTTTACTTTTATAGGAT
CTGGCGACCACTGCAATATTTCGAACACGTGATTTGAATTGATTAAACGA
TTCTTGTAAAACAAACGCTGTTTATCTTCTGGTATTTGCAGCTTACTTTC
AACAAATTCATTCACATCTTGACATTCACGATAATGATAAACCCAATAGT
GGTCAGTATCAAAACTGGTGACATGAATTGGTATCAACGTTCTGATATTA
TTCTCTTGGTAAATAGATTCCAATTCATGATTTGGTGTTGAGTACACACG
CAAACGCATtatttctggaggggccaaccTGTCAGTAAGTTTTAGAGGAA
ATATACCATGCTTCTCAATAAGCCTACCTTCACAATGCAGTTCCTGTTCT
TCTACAGGGATATGGAAACGAGCTTCAATCCAATCTTTCAGGACACTAAT
GCGCATGTCTCCAATTTCGTGTAAAGGATATTCGATGAGGAGATCTTCAC
AATCAATCCTTGGAATCAGTATATCGACTAACGGTATAGCCCATTTTGAA
AGGATAAGCTGAATATTTTCTTTACTATCAAGCATAGTTAGCAATACATC
TTCAAAGTCGAGAAATAAATCTGCTATCACATATCCATCATCCAATATAA
AACAATTGTTTAGCAGAAACAACCTCCTTTCTACTGGGAGAGCCGATTTT
ATGTCACGTTTAAGGTCTAAAACTAATCGTTCAGGGTCCCCGATTTGAAA
TTGGATAGCTATTTTATCAGGATCAGGAACTACAATTTCACCGACTCGAT
TTTGCTTTGAAATCCAAGCACGTCTACCCTTGATAATTACTGGATCAgga
atttcaactttgaaaacaaCATTTCTGTTGAATCGGTTCCGAAAGATTGC
ACTAAATAACTCTTCATCCACAATaatgttttcatgttttattaTTTGAT
CATTTATTGGAACATTGAAACGTTTGTTAATACATTCTTTCAGCTTTCGA
AGAGTATCTGTTTTATGCCAAAGAAATATAGATGTAACATCATCACCAAA
ATCTACTTTTAtattgtttttcatgtttttctttctttgctg
Run BLAST on NCBI

transcript from alignment at scaffold_313:568859..571174-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058769 ID=TCONS_00058769|Name=TCONS_00058769|organism=Clytia hemisphaerica|type=transcript|length=2316bp|location=Sequence derived from alignment at scaffold_313:568859..571174- (Clytia hemisphaerica)
GTTTACTTTATTTCCAAAGACTATACAGAAAACAGTCTACTAAGCAATAA
GACATTTCGAAGAGTTGGCAGATTTAACAACAAATAAAAATTCAGTATCC
CCAACATCTCTTAACAGAGTTTTTTTATTGATACCATTTTTCTTCAAAAA
TGGAACACCACAATGAGAATTATCACGTTTTATGTCCTCAATAAGGTTCT
CGACAGTATCAAGCTCCAAATTATTTACTCCGTACTCGATCTTTCTCGTC
TCTCCTTCTTGGTCTGTCAGCGAGATTGAAACACGTTTACTAACCTTGAT
AAGGTCATGGTTTTCACCTTCCCAGTAACAATCGTATAGAGAAATATTTT
CCTGCGTGATTCCATATATACTATGAATATTGATCAAGAGTGAAGGAATG
TCTGTGTGCTCGCTTACGATCTCTTTCAATCGAGTTATGGAATCTGTTAC
CAAAACTTTCACTCTCAATTGTCCATTGAGTATGTTACCATGTAAACATA
GTTCAATCTCCTTCGCTTGTTTTACTATCAATGTAAAAGTAATAGATTGG
CGATTCATTAAAGGATTCAAACTAACTTTGTCTCATCACTGAGTTCTGCC
GCATTTTCAAGATATAATGCTTGCAGGAGTTGCGGAATGTCTTTCAATTG
ATGAATGTGATCTTTAACCTCCTTTAATGTCGAAATCTTATTCGAAATCA
CATCAACGGTGAATTTTCCAGTCAAAAAATTGATATGAACTTCTTTGAAA
TATTTCAAGCCGTGTTTTTTACAAAATCTATCCACGTTCGGAGCATCTTG
TTTGTCAGATGGACTAACCAGTAATGTTATACAAAGGTCTTCATTGAAAC
GATTCTCATCATCTACAANCTAACCAGTAATGTTATACAAAGGTCTTCAC
TGAAACGATTCTCATCATCTACAAAAAGATTATAAAGATTGAAATCGTAT
TGAAATTCTTCTTCATTACGCATCAGATATAAGCAACTCATTGAGAGATC
CTGGTTTTCCTTTCGGATCCACTCATATATCATATCTAAGGGTATATTGC
CATTCTTAGAAAGCGGTAAATCAAACAAGACCGAACCATCACTAGGACTG
TTGATGATAATTGAACGTATTCGACTTATCTCAAATCTATGAATAATCTC
CAATAACTCCATCTCATTATCATCTATCTGAACAGCCAAGTTTATTTTTA
TAGGATCTGGCGACCACTGCGATATTTCGAACACANATCATCTATCTGAA
CAGCCAGGTTTACTTTTATAGGATCTGGCGACCACTGCAATATTTCGAAC
ACGTGATTTGAATTGATTAAACGATTCTTGTAAAACAAACGCTGTTTATC
TTCTGGTATTTGCAGCTTACTTTCAACAAATTCATTCACATCTTGACATT
CACGATAATGATAAACCCAATAGTGGTCAGTATCAAAACTGGTGACATGA
ATTGGTATCAACGTTCTGATATTATTCTCTTGGTAAATAGATTCCAATTC
ATGATTTGGTGTTGAGTACACACGCAAACGCATTATTTCTGGAGGGGCCA
ACCTGTCAGTAAGTTTTAGAGGAAATATACCATGCTTCTCAATAAGCCTA
CCTTCACAATGCAGTTCCTGTTCTTCTACAGGGATATGGAAACGAGCTTC
AATCCAATCTTTCAGGACACTAATGCGCATGTCTCCAATTTCGTGTAAAG
GATATTCGATGAGGAGATCTTCACAATCAATCCTTGGAATCAGTATATCG
ACTAACGGTATAGCCCATTTTGAAAGGATAAGCTGAATATTTTCTTTACT
ATCAAGCATAGTTAGCAATACATCTTCAAAGTCGAGAAATAAATCTGCTA
TCACATATCCATCATCCAATATAAAACAATTGTTTAGCAGAAACAACCTC
CTTTCTACTGGGAGAGCCGATTTTATGTCACGTTTAAGGTCTAAAACTAA
TCGTTCAGGGTCCCCGATTTGAAATTGGATAGCTATTTTATCAGGATCAG
GAACTACAATTTCACCGACTCGATTTTGCTTTGAAATCCAAGCACGTCTA
CCCTTGATAATTACTGGATCAGGAATTTCAACTTTGAAAACAACATTTCT
GTTGAATCGGTTCCGAAAGATTGCACTAAATAACTCTTCATCCACAATAA
TGTTTTCATGTTTTATTATTTGATCATTTATTGGAACATTGAAACGTTTG
TTAATACATTCTTTCAGCTTTCGAAGAGTATCTGTTTTATGCCAAAGAAA
TATAGATGTAACATCATCACCAAAATCTACTTTTATATTGTTTTTCATGT
TTTTCTTTCTTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037014XLOC_037014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058769-exon-scaffold_313-1575043694:570339..571174TCONS_00058769-exon-scaffold_313-1575043694:570339..571174Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1575043694:569986..570282TCONS_00058769-exon-scaffold_313-1575043694:569986..570282Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1575043694:568859..569917TCONS_00058769-exon-scaffold_313-1575043694:568859..569917Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1510915933:570339..571174TCONS_00058769-exon-scaffold_313-1510915933:570339..571174Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1510915933:569986..570282TCONS_00058769-exon-scaffold_313-1510915933:569986..570282Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1510915933:568859..569917TCONS_00058769-exon-scaffold_313-1510915933:568859..569917Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1491911889:570339..571174TCONS_00058769-exon-scaffold_313-1491911889:570339..571174Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1491911889:569986..570282TCONS_00058769-exon-scaffold_313-1491911889:569986..570282Clytia hemisphaericaexon
TCONS_00058769-exon-scaffold_313-1491911889:568859..569917TCONS_00058769-exon-scaffold_313-1491911889:568859..569917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:568859..571174 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.55725e-05	0.510324	0	0	0	0	0	0	0.20037	0.236937	0.981922	0.173867	0.3897	0	0	1.0492	0.762491	0	0.603213	0	1.88839	0	0	0	0.392557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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