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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058768 ID=TCONS_00058768|Name=TCONS_00058768|organism=Clytia hemisphaerica|type=transcript|length=2156bp
CTACTAAGCAATAAGACATTTCGAAGAGTTGGCAGATTTAAcaacaaata
aaaattcagTATCCCCAACATCTCTTAACAGAGTTTTTTTATTGATacca
tttttcttcaaaaatggaaCACCACAATGAGAATTATCACGTTTTATGTC
CTCAATAAGGTTCTCGACAGTATCAAGCTCCAAATTATTTACTCCGTACT
CGATCTTTCTCGTCTCTCCTTCTTGGTCTGTCAGCGAGATTGAAACACGT
TTACTAACCTTGATAAGGTCATGGTTTTCACCTTCCCAGTAACAATCGTA
TAGAGAAATATTTTCCTGCGTGATTCCATATATACTATGAATATTGATCA
AGAGTGAAGGAATGTCTGTGTGCTCGCTTACGATCTCTTTCAATCGAGTT
ATGGAATCTGTTACCAAAACTTTCACTCTCAATTGTCCATTGAGTATGTT
ACCATGTAAACATAGTTCAATCTCCTTCGCTTGTTTTACTATCAATGTAA
AAGTAATAGATTGGCGATTCATTAAAGGATTCAAACTAACTTTGTCTCAT
CACTGAGTTCTGCCGCATTTTCAAGATATAATGCTTGCAGGAGTTGCGGA
ATGTCTTTCAATTGATGAATGTGATCTTTAACCTCCTTTAATGTCGAAAT
CTTATTCGAAATCACATCAACGGTGAATTTTCCAGTCAAAAAATTGATAT
GAActtctttgaaatatttcaagccgtgttttttacaaaatctaTCCACG
TTCGGAGCATCTTGTTTGTCAGATGGACTAACCAGTAATGTTATACAAAG
GTCTTCACTGAAACGATTCTCATCATCTACAAAAAGATTATAAAGATTGA
AATCGTATTGAAATTCTTCTTCATTACGCATCAGATATAAGCAACTCATT
GAGAGATCCTGGTTTTCCTTTCGGATCCACTCATATATCATATCTAAGGG
TATATTGCCATTCTTAGAAAGCGGTAAATCAAACAAGACCGAACCATCAC
TAGGACTGTTGATGATAATTGAACGTATTCGACTTATCTCAAATCTATGA
ATAATCTCCAATAACTCCATCTCATTATCATCTATCTGAACAGCCAAGTT
TATTTTTATAGGATCTGGCGACCACTGCGATATTTCGAACACGTGATTTG
AATTGATTAAACGATTCTTGTAAAACAAACGCTGTTTATCTTCTGGTATT
TGCAGCTTACTTTCAACAAATTCATTCACATCTTGACATTCACGATAATG
ATAAACCCAATAGTGGTCAGTATCAAAACTGGTGACATGAATTGGTATCA
ACGTTCTGATATTATTCTCTTGGTAAATAGATTCCAATTCATGATTTGGT
GTTGAGTACACACGCAAACGCATtatttctggaggggccaaccTGTCAGT
AAGTTTTAGAGGAAATATACCATGCTTCTCAATAAGCCTACCTTCACAAT
GCAGTTCCTGTTCTTCTACAGGGATATGGAAACGAGCTTCAATCCAATCT
TTCAGGACACTAATGCGCATGTCTCCAATTTCGTGTAAAGGATATTCGAT
GAGGAGATCTTCACAATCAATCCTTGGAATCAGTATATCGACTAACGGTA
TAGCCCATTTTGAAAGGATAAGCTGAATATTTTCTTTACTATCAAGCATA
GTTAGCAATACATCTTCAAAGTCGAGAAATAAATCTGCTATCACATATCC
ATCATCCAATATAAAACAATTGTTTAGCAGAAACAACCTCCTTTCTACTG
GGAGAGCCGATTTTATGTCACGTTTAAGGTCTAAAACTAATCGTTCAGGG
TCCCCGATTTGAAATTGGATAGCTATTTTATCAGGATCAGGAACTACAAT
TTCACCGACTCGATTTTGCTTTGAAATCCAAGCACGTCTACCCTTGATAA
TTACTGGATCAggaatttcaactttgaaaacaaCATTTCTGTTGAATCGG
TTCCGAAAGATTGCACTAAATAACTCTTCATCCACAATaatgttttcatg
ttttattaTTTGATCATTTATTGGAACATTGAAACGTTTGTTAATACATT
CTTTCAGCTTTCGAAGAGTATCTGTTTTATGCCAAAGAAATATAGATGTA
ACATCATCACCAAAATCTACTTTTAtattgtttttcatgtttttctttct
ttgctg Run BLAST on NCBI transcript from alignment at scaffold_313:568859..571138- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058768 ID=TCONS_00058768|Name=TCONS_00058768|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_313:568859..571138- (Clytia hemisphaerica)
CTACTAAGCAATAAGACATTTCGAAGAGTTGGCAGATTTAACAACAAATA
AAAATTCAGTATCCCCAACATCTCTTAACAGAGTTTTTTTATTGATACCA
TTTTTCTTCAAAAATGGAACACCACAATGAGAATTATCACGTTTTATGTC
CTCAATAAGGTTCTCGACAGTATCAAGCTCCAAATTATTTACTCCGTACT
CGATCTTTCTCGTCTCTCCTTCTTGGTCTGTCAGCGAGATTGAAACACGT
TTACTAACCTTGATAAGGTCATGGTTTTCACCTTCCCAGTAACAATCGTA
TAGAGAAATATTTTCCTGCGTGATTCCATATATACTATGAATATTGATCA
AGAGTGAAGGAATGTCTGTGTGCTCGCTTACGATCTCTTTCAATCGAGTT
ATGGAATCTGTTACCAAAACTTTCACTCTCAATTGTCCATTGAGTATGTT
ACCATGTAAACATAGTTCAATCTCCTTCGCTTGTTTTACTATCAATGTAA
AAGTAATAGATTGGCGATTCATTAAAGGATTCAAACTAACTTTGTCTCAT
CACTGAGTTCTGCCGCATTTTCAAGATATAATGCTTGCAGGAGTTGCGGA
ATGTCTTTCAATTGATGAATGTGATCTTTAACCTCCTTTAATGTCGAAAT
CTTATTCGAAATCACATCAACGGTGAATTTTCCAGTCAAAAAATTGATAT
GAACTTCTTTGAAATATTTCAAGCCGTGTTTTTTACAAAATCTATCCACG
TTCGGAGCATCTTGTTTGTCAGATGGACTAACCAGTAATGTTATACAAAG
GTCTTCATTGAAACGATTCTCATCATCTACAANCTAACCAGTAATGTTAT
ACAAAGGTCTTCACTGAAACGATTCTCATCATCTACAAAAAGATTATAAA
GATTGAAATCGTATTGAAATTCTTCTTCATTACGCATCAGATATAAGCAA
CTCATTGAGAGATCCTGGTTTTCCTTTCGGATCCACTCATATATCATATC
TAAGGGTATATTGCCATTCTTAGAAAGCGGTAAATCAAACAAGACCGAAC
CATCACTAGGACTGTTGATGATAATTGAACGTATTCGACTTATCTCAAAT
CTATGAATAATCTCCAATAACTCCATCTCATTATCATCTATCTGAACAGC
CAAGTTTATTTTTATAGGATCTGGCGACCACTGCGATATTTCGAACACAN
ATCATCTATCTGAACAGCCAGGTTTACTTTTATAGGATCTGGCGACCACT
GCAATATTTCGAACACGTGATTTGAATTGATTAAACGATTCTTGTAAAAC
AAACGCTGTTTATCTTCTGGTATTTGCAGCTTACTTTCAACAAATTCATT
CACATCTTGACATTCACGATAATGATAAACCCAATAGTGGTCAGTATCAA
AACTGGTGACATGAATTGGTATCAACGTTCTGATATTATTCTCTTGGTAA
ATAGATTCCAATTCATGATTTGGTGTTGAGTACACACGCAAACGCATTAT
TTCTGGAGGGGCCAACCTGTCAGTAAGTTTTAGAGGAAATATACCATGCT
TCTCAATAAGCCTACCTTCACAATGCAGTTCCTGTTCTTCTACAGGGATA
TGGAAACGAGCTTCAATCCAATCTTTCAGGACACTAATGCGCATGTCTCC
AATTTCGTGTAAAGGATATTCGATGAGGAGATCTTCACAATCAATCCTTG
GAATCAGTATATCGACTAACGGTATAGCCCATTTTGAAAGGATAAGCTGA
ATATTTTCTTTACTATCAAGCATAGTTAGCAATACATCTTCAAAGTCGAG
AAATAAATCTGCTATCACATATCCATCATCCAATATAAAACAATTGTTTA
GCAGAAACAACCTCCTTTCTACTGGGAGAGCCGATTTTATGTCACGTTTA
AGGTCTAAAACTAATCGTTCAGGGTCCCCGATTTGAAATTGGATAGCTAT
TTTATCAGGATCAGGAACTACAATTTCACCGACTCGATTTTGCTTTGAAA
TCCAAGCACGTCTACCCTTGATAATTACTGGATCAGGAATTTCAACTTTG
AAAACAACATTTCTGTTGAATCGGTTCCGAAAGATTGCACTAAATAACTC
TTCATCCACAATAATGTTTTCATGTTTTATTATTTGATCATTTATTGGAA
CATTGAAACGTTTGTTAATACATTCTTTCAGCTTTCGAAGAGTATCTGTT
TTATGCCAAAGAAATATAGATGTAACATCATCACCAAAATCTACTTTTAT
ATTGTTTTTCATGTTTTTCTTTCTTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058768-exon-scaffold_313-1575043694:570339..571138 | TCONS_00058768-exon-scaffold_313-1575043694:570339..571138 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1575043694:569941..570282 | TCONS_00058768-exon-scaffold_313-1575043694:569941..570282 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1575043694:568859..569872 | TCONS_00058768-exon-scaffold_313-1575043694:568859..569872 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1510915933:570339..571138 | TCONS_00058768-exon-scaffold_313-1510915933:570339..571138 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1510915933:569941..570282 | TCONS_00058768-exon-scaffold_313-1510915933:569941..570282 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1510915933:568859..569872 | TCONS_00058768-exon-scaffold_313-1510915933:568859..569872 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1491911889:570339..571138 | TCONS_00058768-exon-scaffold_313-1491911889:570339..571138 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1491911889:569941..570282 | TCONS_00058768-exon-scaffold_313-1491911889:569941..570282 | Clytia hemisphaerica | exon |
| TCONS_00058768-exon-scaffold_313-1491911889:568859..569872 | TCONS_00058768-exon-scaffold_313-1491911889:568859..569872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:568859..571138 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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