TCONS_00058764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058764
Unique NameTCONS_00058764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058764 ID=TCONS_00058764|Name=TCONS_00058764|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TCAGTAAATAATTaagaaaataaactaaaaatgtCAGCAATCAGTGACAG
TCAGATGTTGGACGAAGCAGAATCGAAAGTTCATTACAGGGAAGAGATTG
CTAAATATTACCTGAAAAAACATCGAATCACCGATTTATTTGACAATATC
ACCGCCGCTCTCGTTTATCAACGGCCAGacgaCCCAAAAGAATTCATGAT
CGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGTTAGATTATC
CAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGTATCATGGAC
CCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATCAGGCATGGA
AAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACGAAG
ATCAAATTGGACTTGATGTTTTCGTCATAGAAGCGAAAGAAGGGCTGAAG
GTTTCTAATGCAACTTTTTCACCGAGCTAGGTGACCAGAGTTACATCATC
CATCTATTGTACTTGTAAATAGgtttaatttgttttaaattgtaaaactt
ttgtaaataaaaagtaatggcaagttttaattttcatttctcaTTAACTG
GTATAGTAGGCCCTGTCGCAACCGCGTTGAGATCTGTACAGACGGTCACG
GATCGTTCATTGTTATAGCTGATCTATGGAGGGAGGGTTGATTAGCGCTT
TGATACAAACAACAAACTCTCTATTTACATATGAAAGACTAGAGGGGGTG
ATTTACTCTTTCTTGTGCAAAATATGCTCGATAGGCTATCAACTATCTAA
CCAATTCGCATCATATGGCATTTCGCCCGGGCGGAAGAAAGTAAGTACCA
ATTAAGTTATGCAAAGAATAACACTAGAGCACTTTTACCTATAAATACTC
CCCATCAATACTAAAGAGTTTCACAGAAACAGCATATTTCTGCTTGAGGT
GGGTTTATTACATGTTGAATTTGCCATCAACGTCTAAATACATTCAGAAT
TTCGAGTATTTTAagttaacgtttttcagaagtTATACTTTAAGTCCCGG
TGAGAAAAAcggtttcagtacttccactttatttcattaggtatttcgat
ttgggaggggtttagTGACTTCCATGCTATATTTTCAGTcttattgaaac
atttttgaccTTTTGGATCTATCGACCCTAATTCAAGTCTAATGTTATGT
TAAACCtcagagttaaaattctacATTCCAGAATTAAGTTATAGTCTATC
CTCTACCACTATGGATGATGGTTACAAACACtcaattttcattgtttttg
ataattGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00058764-protein

>TCONS_00058764-protein ID=TCONS_00058764-protein|Name=TCONS_00058764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MSAISDSQMLDEAESKVHYREEIAKYYLKKHRITDLFDNITAALVYQRPD
DPKEFMIDYIKKLRDSKAAKLDYPSLFDETNVRSLFGIMDPAKKGYINHS
QYKSGMENIGVSTYERNPPGSDEDQIGLDVFVIEAKEGLKVSNATFSPS
Run BLAST on NCBI

transcript from alignment at scaffold_313:486434..488768-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058764 ID=TCONS_00058764|Name=TCONS_00058764|organism=Clytia hemisphaerica|type=transcript|length=2335bp|location=Sequence derived from alignment at scaffold_313:486434..488768- (Clytia hemisphaerica)
TCAGTAAATAATTAAGAAAATAAACTAAAAATGTCAGCAATCAGTGACAG
TCAGATGTTGGACGAAGCAGAATCGAAAGTTCATTACAGGGAAGAGATTG
CTAAATATTACCTGAAAAAACATCGAATCACCGATTTATTTGACAATATC
ACCGCCGCTCTCGTTTATCAACGGCCAGGTAACTCAAACAAAGCTCTTAT
AATGCTTTTGTTTTCAGATAGGGATTATATAATTGATATATAAGTACCCT
GTCTCGCTGACCAAGCTTTTTATCCAGTGTGTATCAAAAGGAAGGAGCCG
ACGAAAAGAGGTGGGAAATTTCTTTGTGATAGGACTGTTTCCGTTCTTTC
CGACATGTATTTTTACCAGTGGTTATAAAAGTTTACTGTATAATAATAGT
GTGAAGGGTATTTTTCCAGATGATTTTTTAGGATATTCTTTTATTACCGG
GAGAAGGCACTTTCATGCCTGTGATTCGAATGCATTAATTTTTTTGCGCT
CGGATTTCCAAAAGTCTTATTCGTGTATTTTACAGACGACCCAAAAGAAT
TCATGATCGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGTTA
GATTATCCAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGTAT
CATGGACCCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATCAG
GTATGCTTTAAATTTTAGAATAATATCTTTGGGTTACTAGAGGTAACTCA
TTTATATCAACTCGATTACGGTATTATGTCCTTAGTTTAAATCATTATTG
TGAGCACGTTTTCATCGAAATGAATATTTTGTAGAATATTGTGCTTGTGT
ATTTTCGATTGTTTTTTAACTTTTTCTTCGTTAATCGTGTATCCAGGCAT
GGAAAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACG
AAGATCAAATTGGACTTGATGTTTTCGTCATAGAAGCGTAAGTTATCCCC
TCCTAAATATTTATGGTCTTAATTATGATAAAAATCTACTTTTAGTCCCT
GTGTTATTTGAAGTTAACAATTAACCTGATTTTTAGCCTCCTAATAAAAT
GCTAAATCTCGGGGAATTAGTCCTGCTAAAGGTCCCAAAGTTTCCAAAGT
TTTGGCTTTTTTCCTCAGATTCTGATCAATTAAATTTTTAGAAATTAAGT
AGCACATACACGTCGAGATGTGCCGCTTATATGACGAACAATGTCAAAAA
ATTAAAAGGCACCCTAGGAGTGACTGAATTTTACTACCTACTTTGGACTC
GTAGACATGACCTGCAGCACACCCCGTACTTCTTTTGGACTCAGTGCACA
GCTCGGAACCAGGAAATATTATTTGAATTTTTTCTGTTGATGTTTTTCTT
TCAGGAAAGAAGGGCTGAAGGTTTCTAATGCAACTTTTTCACCGAGCTAG
GTGACCAGAGNAGAAGGGCTGAACGTTTCTAATGCAACTTTTTCACCGAG
CTAGGTGACCAGAGTTACATCATCCATCTATTGTACTTGTAAATAGGTTT
AATTTGTTTTAAATTGTAAAACTTTTGTAAATAAAAAGTAATGGCAAGTT
TTAATTTTCATTTCTCATTAACTGGTATAGTAGGCCCTGTCGCAACCGCG
TTGAGATCTGTACAGACGGTCACGGATCGTTCATTGTTATAGCTGATCTA
TGGAGGGAGGGTTGATTAGCGCTTTGATACAAACAACAAACTCTCTATTT
ACATATGAAAGACTAGAGGGGGTGATTTACTCTTTCTTGTGCAAAATATG
CTCGATAGGCTATCAACTATCTAACCAATTCGCATCATATGGCATTTCGC
CCGGGCGGAAGAAAGTAAGTACCAATTAAGTTATGCAAAGAATAACACTA
GAGCACTTTTACCTATAAATACTCCCCATCAATACTAAAGAGTTTCACAG
AAACAGCATATTTCTGCTTGAGGTGGGTTTATTACATGTTGAATTTGCCA
TCAACGTCTAAATACATTCAGAATTTCGAGTATTTTAAGTTAACGTTTTT
CAGAAGTTATACTTTAAGTCCCGGTGAGAAAAACGGTTTCAGTACTTCCA
CTTTATTTCATTAGGTATTTCGATTTGGGAGGGGTTTAGTGACTTCCATG
CTATATTTTCAGTCTTATTGAAACATTTTTGACCTTTTGGATCTATCGAC
CCTAATTCAAGTCTAATGTTATGTTAAACCTCAGAGTTAAAATTCTACAT
TCCAGAATTAAGTTATAGTCTATCCTCTACCACTATGGATGATGGTTACA
AACACTCAATTTTCATTGTTTTTGATAATTGAAAG

Coding sequence (CDS) from alignment at scaffold_313:486434..488768-

>TCONS_00058764 ID=TCONS_00058764|Name=TCONS_00058764|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_313:486434..488768- (Clytia hemisphaerica)
GAAAGAAGGGCTGAAGGTTTCTAATGCAACTTTTTCACCGAGCTAGGCAT
GGAAAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACG
AAGATCAAATTGGACTTGATGTTTTCGTCATAGAAGCACGACCCAAAAGA
ATTCATGATCGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGT
TAGATTATCCAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGT
ATCATGGACCCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATC
AGATGTCAGCAATCAGTGACAGTCAGATGTTGGACGAAGCAGAATCGAAA
GTTCATTACAGGGAAGAGATTGCTAAATATTACCTGAAAAAACATCGAAT
CACCGATTTATTTGACAATATCACCGCCGCTCTCGTTTATCAACGGCCAG
GAAAGAAGGGCTGAAGGTTTCTAATGCAACTTTTTCACCGAGCTAGGCAT
GGAAAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACG
AAGATCAAATTGGACTTGATGTTTTCGTCATAGAAGCACGACCCAAAAGA
ATTCATGATCGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGT
TAGATTATCCAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGT
ATCATGGACCCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATC
AGATGTCAGCAATCAGTGACAGTCAGATGTTGGACGAAGCAGAATCGAAA
GTTCATTACAGGGAAGAGATTGCTAAATATTACCTGAAAAAACATCGAAT
CACCGATTTATTTGACAATATCACCGCCGCTCTCGTTTATCAACGGCCAG
GAAAGAAGGGCTGAAGGTTTCTAATGCAACTTTTTCACCGAGCTAGGCAT
GGAAAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACG
AAGATCAAATTGGACTTGATGTTTTCGTCATAGAAGCACGACCCAAAAGA
ATTCATGATCGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGT
TAGATTATCCAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGT
ATCATGGACCCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATC
AGATGTCAGCAATCAGTGACAGTCAGATGTTGGACGAAGCAGAATCGAAA
GTTCATTACAGGGAAGAGATTGCTAAATATTACCTGAAAAAACATCGAAT
CACCGATTTATTTGACAATATCACCGCCGCTCTCGTTTATCAACGGCCAG
GAAAGAAGGGCTGAAGGTTTCTAATGCAACTTTTTCACCGAGCTAGGCAT
GGAAAATATTGGAGTGTCGACTTACGAGAGAAATCCACCAGGTTCAGACG
AAGATCAAATTGGACTTGATGTTTTCGTCATAGAAGCACGACCCAAAAGA
ATTCATGATCGATTATATCAAGAAATTAAGAGACTCGAAAGCAGCCAAGT
TAGATTATCCAAGTTTGTTTGACGAAACCAATGTACGGTCCTTATTTGGT
ATCATGGACCCAGCTAAGAAAGGTTATATCAATCATTCGCAATATAAATC
AGATGTCAGCAATCAGTGACAGTCAGATGTTGGACGAAGCAGAATCGAAA
GTTCATTACAGGGAAGAGATTGCTAAATATTACCTGAAAAAACATCGAAT
CACCGATTTATTTGACAATATCACCGCCGCTCTCGTTTATCAACGGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037010XLOC_037010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058764-exon-scaffold_313-1575043694:488591..488768TCONS_00058764-exon-scaffold_313-1575043694:488591..488768Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1575043694:488069..488233TCONS_00058764-exon-scaffold_313-1575043694:488069..488233Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1575043694:487782..487872TCONS_00058764-exon-scaffold_313-1575043694:487782..487872Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1575043694:487319..487364TCONS_00058764-exon-scaffold_313-1575043694:487319..487364Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1575043694:486434..487264TCONS_00058764-exon-scaffold_313-1575043694:486434..487264Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1510915933:488591..488768TCONS_00058764-exon-scaffold_313-1510915933:488591..488768Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1510915933:488069..488233TCONS_00058764-exon-scaffold_313-1510915933:488069..488233Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1510915933:487782..487872TCONS_00058764-exon-scaffold_313-1510915933:487782..487872Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1510915933:487319..487364TCONS_00058764-exon-scaffold_313-1510915933:487319..487364Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1510915933:486434..487264TCONS_00058764-exon-scaffold_313-1510915933:486434..487264Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1491911889:488591..488768TCONS_00058764-exon-scaffold_313-1491911889:488591..488768Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1491911889:488069..488233TCONS_00058764-exon-scaffold_313-1491911889:488069..488233Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1491911889:487782..487872TCONS_00058764-exon-scaffold_313-1491911889:487782..487872Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1491911889:487319..487364TCONS_00058764-exon-scaffold_313-1491911889:487319..487364Clytia hemisphaericaexon
TCONS_00058764-exon-scaffold_313-1491911889:486434..487264TCONS_00058764-exon-scaffold_313-1491911889:486434..487264Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058764-proteinTCONS_00058764-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:486434..488768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.0592	35.3812	67.0346	75.8536	22.1852	18.2858	14.0727	14.5697	11.5571	10.3164	6.91476	9.73421	4.15377	2.62382	2.12057	2.31493	2.94848	4.38452	4.7912	5.04946	4.10876	4.41815	7.86246	7.48371	32.7333	25.6969	3.97299	2.49694	1.60798	1.63827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003117cAMP_dep_PK_reg_su_I/II_a/b
Blast
[Close]
BLAST of TCONS_00058764 vs. Swiss-Prot (Human)
Match: EFC10 (EF-hand calcium-binding domain-containing protein 10 OS=Homo sapiens GN=EFCAB10 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.010e-18
Identity = 41/121 (33.88%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:   88 REEIAKYYLKKHRITDLFDNITAALVYQRPDDPKEFMIDYIKKLRDSKAAKLDYPSLFDETNVRSLFGIMDPAKKGYINHSQYKSGMENIGVSTYERNPPGSDEDQIGLDVFVIEAKEGLK 450
            RE  A  YL+KH+I ++   +T+AL++ RP+ PKE++I  +++LR +K   + +P   D +N+ ++F +MD + +G I+  QYK  ++ +G+ T E      D  +I LD F  E  + +K
Sbjct:    6 RELQAAEYLEKHQIKEVVSYLTSALLFFRPEKPKEYLISLLERLRIAKVTGVAFPFFMDNSNIVAMFEMMDSSGRGTISFVQYKEALKTLGLCT-EDEDLQDDGHKITLDKFKEEVNKRMK 125
The following BLAST results are available for this feature:
BLAST of TCONS_00058764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFC107.010e-1833.88EF-hand calcium-binding domain-containing protein ... [more]
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