TCONS_00058761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058761
Unique NameTCONS_00058761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058761 ID=TCONS_00058761|Name=TCONS_00058761|organism=Clytia hemisphaerica|type=transcript|length=2766bp
GCATTGCAGTGTTTCGAAACACTTCTGATAGATTACTTGGTATCTATATG
TGTGAACAGCTCCGAGACAGAATGATGGATGAGAACTGTGTTCTGTATAG
AGAAGCTCAGGAAACATCAGTTCAAAGTATGCTTTTCAagaggaaaatca
aatatggtatCGATCCAGCACCACCAGATATTTTGTCTGAAAAGGAAGTT
GCTGAACTACTCTCTATAATGGataatggTGGAGATTTACCAGATGATTG
GGAAGATGATTTCGTACCATCACCAGATTACGATTCTGAAGAATCAGAAT
CGGAATCCTCAGTATCTGAAGATCCTCTTTCTGATAACTACATTGAAGAT
GATGAAATATGCTCTGAAAATGATGCAACAGAGTCTGACGATAGTTTTGA
ACAACACGGAAGAACATTTTACTCATTTGATGGAAAGACACCTAAGATTT
TATATTATGCAAAATCAGGAGCTCTTTCTGTCGTCAAAAGAGAAGCTCTG
TGTGAAAGAGCTTACATTATTAATGTTTCATTAAAGCGAACTGAAAAGAA
AGGAGCTGAACTTTTACAATGGCATAATGACACACCTCTAATTGCTGCGG
CAAGAAATGGTCATTTTGAAATTGTGCATCATTTGTTATCTATTGGAGCA
GACCCTACCTTGGAGAGTAGCCACGCTAGTGGTACCGGTGGAAATGCAAT
CAAAGCTGCTTCAGAAAATTTATCATGCCTActtaaaaacaaagatgaaa
ttTTAAAGAGATGTTTCACAGGTGATATTGAAACAATTGACCCTAAAGCA
GCTTCATTAGATATTCTTTACAgaataaaagattttcaggATATCATTGA
TGTGTTGAAAATTGCTGAGTCACATTGGCAAAAGGCACCATACTTCTCTG
CAAGATTCTCCAATGAACGCCAAAGGCAACTTAGAAGATCTCCAAATAAA
CCACTTGACCAAGAAAAGCTAAAAGAAATGTTGGATGAGTTCAAGTCAAG
ACCTCTTATTATGGATGAATTTGATGATCTGGTTGCATCGATTGTTGAAG
TTAAGAAGAACCAGAAGAAAGTTCTTCaagaacaacaaaaaaacaCTGAC
TCCAGTGACTTGAACCAGCGTATAAGAGATGGTATCTGTGCAAGCAGTGC
CAGATGTTCGGGTTCTTCAGCTGCAAAAGGCTGTCAACTTAAGTGTTGTG
GTAAATGCTGTCCAGGCCCTTGTAAAAGGCATCACTTAAAGTCTACAaAA
TGATGAATGGAACGAAGAGACATCCGAGGATCACGTGTTATCGAGTGGTG
AAACTATCTACATTGTTAGAAGGAAGAAATTATTCGAGACAGGAAAAGTT
GAAGAATTTTCGTTCAAGCAAACTTATGCCTATGGTGTGCtaataaatca
aaactgttCTTATTCTGATCGTAAATGCAAAGATGGTATAAATTATGGTG
GTCATAGCGACAATCTAAATGCTAAATTTGaatcacaaacaacaaagaag
atCAATGATAAGCTTCTATACTTTCTGTATACGTATAAAAGACAGATGGA
ATCATTTACACCAGTTGTGGAAAAAGTATTTGCTGAGGGTTATATCTACC
CAATGATCAAAGAAGATCGCTCCCTTAAAGTTCGTGTGACGAATTTAGTA
TCGTTTGGGAATTTACAGGATGCTCAACATAAAATACCACAGCAAGATTT
TCCTGAACGACATGGATATGTTAACACAGTACGTCACTTCAAACCAGGTT
ATTACTACACCAGCGTCATCAAACCCATGGAAGATTGTGATCCATTTGTC
ATGTATCACCCATGAGAGTATCGATCCTCGTAAACTGATGGATCAGATTT
TATTGATGTGTGACGATTATGAGGAGTTTAATCCAAGTGTCTGTAATACT
ATAAATCGCTATGATTGGTGTCAATGGGAGAGTACTAACTCAGACAAAGA
AGATGATGATTATTGTTACTATGATTATGAAATGCTTTGTGAGGAAGTAA
AGAAAGCTAGAcaacaaaaatggaaaaacaaaatggcctttcaaagcacc
ATTTATTTTTGTCCGACCAGATCAGCTGGGCTTTTGAAGAAAGCTGCTAA
ACACAATAGGAAGATACAATCCAATGTTATAGCTGAGCTTTCAGGTTATC
ACGATAAAGAAGATAATGTGTTTGCACTTGGAACTAGTGTTTCTGAAATG
AACAATGCGGATTGGATTTATGGCAGGGTTTTCAAAGATAAGGGAAGCTG
TCAAAATTTTGCCCTGGTTGTGCATCTTGGCCTCCATAGTTTGTTTTATG
AAGGAGGTGTCCCTGACTTTTTGAAGAAACTGTGCCCACACAAAAAGTTT
ACATCTGTGAGAAAAACCAAGCTAAAATTTGATATTACTGactttcaaaa
atagaaatatgGGTAGATTTAATAGCCCTTTTCGTTAAATTTTCAAGATT
GTatttggaattttttgatttttttctttgtgtaattaaactttttacgT
AACTGAACTCATTCTGTGTCTATAACTATAATTCAAAGTAAGATTATAGC
gaaaggatttttgaaaattctctaCAAGGACAATGTTGTGGCTCTTGTGG
GTGCTTACCATAAGAAATGTTTATCATCGTTGGACCTACCttgaggtcct
ataaattaacctttgtccgttcgtccgtccgtccgtccgtccgttcgtcc
gtccgtccgtccgtctgttaccagcttttctcgagattggctcattagtt
ttttctgatttttggc
Run BLAST on NCBI

transcript from alignment at scaffold_313:472868..477450-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058761 ID=TCONS_00058761|Name=TCONS_00058761|organism=Clytia hemisphaerica|type=transcript|length=4583bp|location=Sequence derived from alignment at scaffold_313:472868..477450- (Clytia hemisphaerica)
GCATTGCAGTGTTTCGAAACACTTCTGATAGATTACTTGGTATCTATATG
TGTGAACAGCTCCGAGACAGAATGATGGATGAGAACTGTGTTCTGTATAG
AGAAGCTCAGGAAACATCAGTTCAAAGTATGCTTTTCAAGAGGAAAATCA
AATATGGTATCGATCCAGCACCACCAGATATTTTGTCTGAAAAGGAAGTT
GCTGAACTACTCTCTATAATGGGTAAGTTTAAAAATAAAATCAATATGGT
TCTTCTAAAATCTTTCGAAATATTTACTTCTAGGTAGCAACGAAGAACTT
GCTACTAATTGGCTTTTTTAATTATCTCAAGCTTTGGATTTCAAAAAAGT
TAAATTGGAAAGAAGATTCTGAGAAAATTAGAACTGTTATCATAGTAAAC
TTTTCTGTGGCGGAATAAGATAGGTAATTTAAAATTTTAAACTTTACTAC
TAAATGTTCTTCATCCTTTTCAAAGTTATGAAGAAAATGTTCAAATATTC
GTTTTTGAGAAAAAAGATAATAATCAATTGTTATCTTAATTAAAATACAA
GAAATTGTAAAAAGTTGTTTAACAATACTTTAATATTTTTCAGATAATGG
TGGAGATTTACCAGATGATTGGGAAGATGATTTCGTACCATCACCAGATT
ACGATTCTGAAGAATCAGAATCGGAATCCTCAGTATCTGAAGATCCTCTT
TCTGATAACTACATTGAAGATGATGAAATATGCTCTGAAAATGATGCAAC
AGAGTCTGACGATAGTTTTGAACAACATGATAGAACATTTTTCTCATTTG
ATGGAAAGACACCTAAGATTTTATATTACNCTGAACAACACGGAAGAACA
TTTTACTCATTTGATGGAAAGACACCTAAGATTTTATATTATGCAAAATC
AGGAGCTCTTTCTGTCGTCAAAAGAGAAGCTCTGTGTGAAAGAGCTTACA
TTATTAATGTTTCATTAAAGCGAACTGAAAAGAAAGGAGCTGAACTTTTA
CAATGGCATAATGACACACCTCTAATTGCTGCGGCAAGAAATGGTCATTT
TGAAATTGTGCATCATTTGTTATCTATTGGAGCAGACCCTACCTTGGAGA
GTAGCCACGCTAGTGGTACCGGTGGAAATGCAATCAAAGCTGCTTCAGAA
AATTTATCATGCCTACTTAAAAACAAAGATGAAATTTTAAAGAGATGTTT
CACAGGTGATATTGAAACAATTGACCCTAAAGCAGCTTCATTAGATATTC
TTTACAGAATAAAAGATTTTCAGGATATCATTGATGTGTTGAAAATTGCT
GAGTCACATTGGCAAAAGGCACCATACTTCTCTGCAAGATTCTCCAATGA
ACGCCAAAGGCAACTTAGAAGATCTCCAAATAAACCACTTGACCAAGAAA
AGCTAAAAGAAATGTTGGATGAGTTCAAGTCAAGACCTCTTATTATGGAT
GAATTTGATGATCTGGTTGCATCGATTGTTGAAGTTAAGAAGAACCAGAA
GAAAGTTCTTCAAGAACAACAAAAAAACACTGACTCCAGTGACTTGAACC
AGCGTATAAGAGATGGTATCTGTGCAAGCAGTGCCAGATGTTCGGGTTCT
TCAGCTGCAAAAGGCTGTCAACTTAAGTGTTGTGGTAAATGCTGTCCAGG
CCCTTGTAAAAGGCATCACTTAAAGTCTACAAGTATAAATTATTTTTAAT
CTCTTGTTTTAATGCAAATTTCCTAAGTTCCTAAATAAGGCACAGGAAAA
AAATCTCGATTTTCAAGGTTGGAAATTTCAAGATTTCTTAGTTGGAAAAT
AGATAAAATCTAATGGAAAATCCAACCTGGAAACTTGGGACACTCTCCAA
GGATGGAAATTTTACATTTTCCATGGCTTGGAATTTTCAAAAATCCAGGT
TGAAAAAAGCCAAAATCCAAAAAGTGATGACAGAGATGTGGAAAAAGAGA
TCTTAAACAAGGTTTTTNAAGCAAGGTTTTTGTTTTTGTGAACAGTCGCT
CGCTAGCCTAGGCTCGATGGCTCCTGGTCAATCTCTCGTTATTGTTCGCA
CAGATACGTGGTTGATCACTCTCACAGCTCAGCAGGGCAACATTTGAAAC
TATGACACAAGTACCCTATGTGCTTTACTGTGCGAACTCACTGCGATTGA
CAGAGGCCGCTCCGAAAGGAAGCCTCACCTGACGGAAACTTACAGCTTGA
CTGCTCACATTATAGCCTAATATCTATGTTAGCTATACATCAAAACAGTT
CTGCGCGAAAAATCGCTTGTGGTTTTCTCAAAGGACATGCGCAGAAAATG
GTACAAAAATGTAATTTCCACATGGATTTTTAACGTTTTCCAAACTGTTT
GGAGAAAAACAAATTCCAACCCAAAAAGTCTAGTTTTCCAATCGAAAGAG
TTTCAATTTCACAAAAGTGTAATTTCCACATGGATTTTTAACGTTTTCCA
AACTGTTTGGAGAAACACAAATTTCCAACCCAAAAAGTCTAGTTTTTCAA
CCCGAGGTATCAAATTTACAAAAATATATATTTTCACATCGATTTTTGAC
CTTTTTTTCAATTCCCAAACTGTTTGGAAAATTGTCATTTCTACATTGTT
TTTTTTTCACTTGATTTTTCAAGGGCATTGGTTTATTCTACAAAACCTAT
GGGTAGTTTAGTACGTTTTCCAAATCAGCTTAAGGTAATTGCTCAAATTT
CCAACCTTCAATTATAAAACCAAAATTTCCAACTCAACAATATTGAATTT
CCAACCTTGGAAATCGAAAACTTTTTCCTGTGAGGTCTGACCAGATTGAG
AGAATGATAAATCCTGCAAATCTCAAAGGTTTCTGTTAAGAAAATTTTAC
TATACGCATTTTAAATATTATCTTTCTCTTATAAAGGAGTGTTCCAGCCT
ACAAAAAGGGAAGAGCAAATGTCGTTGCCTTATCATCCAGCCATGAAATC
ACCAACGAATCAAAATATCAAATTATTTGCTTTGCAGAATGATGAATGGA
ACGAAGAGACATCCGAGGATCACGTGTTATCGAGTGGTGAAACTATCTAC
ATTGTTAGAAGGAAGAAATTATTCGAGACAGGAAAAGTTGAAGAATTTTC
GTTCAAGCAAACTTATGCCTATGGTGTGCTAATAAATCAAAACTGTTCTT
ATTCTGATCGTAAATGCAAAGATGGTATAAATTATGGTGGTCATAGCGAC
AATCTAAATGCTAAATTTGAATCACAAACAACAAAGAAGATCAATGATAA
GCTTCTATACTTTCTGTATACGTATAAAAGACAGATGGAATCATTTACAC
CAGTTGTGGAAAAAGTATTTGCTGAGGGTTATATCTACCCAATGATCAAA
GAAGATCGCTCCCTTAAAGTTCGTGTGACGAATTTAGTATCGTTTGGGAA
TTTACAGGATGCTCAACATAAAATACCACAGCAAGATTTTCCTGAACGAC
ATGGATATGTTAACACAGTACGTCACTTCAAACCAGGTTATTACTACACC
AGCGTCATCAAACCCATGGAAGATTGTGATCCATTTGTCATGTATCACCA
TGAGAGTATCGATCCNGTATTACTACACCAGCGCCATCAAACCCATGAAA
GATTGTGATCCATTTGTCATGTACCACCATGAGAGTATCGATCCTCGTAA
ACTGATGGATCAGATTTTATTGATGTGTGACGATTATGAGGAGTTTAATC
CAAGTGTCTGTAATACTATAAATCGCTATGATTGGTGTCAATGGGAGAGT
ACTAACTCAGACAAAGAAGATGATGATTATTGTTACTATGATTATGAAAT
GCTTTGTGAGGAAGTAAAGAAAGCTAGACAACAAAAATGGAAAAACAAAA
TGGCCTTTCAAAGCACCATTTATTTTTGTCCGACCAGATCAGCTGGGCTT
TTGAAGAAAGCTGCTAAACACAATAGGAAGATACAATCCAATGTTATAGC
TGAGCTTTCAGGTTATCACGATAAAGAAGATAATGTGTTTGCACTTGGAA
CTAGTGTTTCTGAAATGAACAATGCGGATTGGATTTATGGCAGGGTTTTC
AAAGATAAGGGAAGCTGTCAAAATTTTGCCCTGGTTGTGCATCTTGGCCT
CCATAGTTTGTTTTATGAAGGAGGTGTCCCTGACTTTTTGAAGAAACTGT
GCCCACACAAAAAGTTTACATCTGTGAGAAAAACCAAGCTAAAATTTGAT
ATTACTGACTTTCAAAAATAGAAATATGGGTAGATTTAATAGCCCTTTTC
GTTAAATTTTCAAGATTGTATTTGGAATTTTTTGATTTTTTTCTTTGTGT
AATTAAACTTTTTACGTAACTGAACTCATTCTGTGTCTATAACTATAATT
CAAAGTAAGATTATAGCGAAAGGATTTTTGAAAATTCTCTACAAGGACAA
TGTTGTGGCTCTTGTGGGTGCTTACCATAAGAAATGTTTATCATCGTTGG
ACCTACCTTGAGGTCCTATAAATTAACCTTTGTCCGTTCGTCCGTCCGTC
CGTCCGTCCGTTCGTCCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCG
AGATTGGCTCATTAGTTTTTTCTGATTTTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037009XLOC_037009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058761-exon-scaffold_313-1575043694:477229..477450TCONS_00058761-exon-scaffold_313-1575043694:477229..477450Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1575043694:476675..476857TCONS_00058761-exon-scaffold_313-1575043694:476675..476857Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1575043694:475769..476611TCONS_00058761-exon-scaffold_313-1575043694:475769..476611Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1575043694:473902..474463TCONS_00058761-exon-scaffold_313-1575043694:473902..474463Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1575043694:472868..473823TCONS_00058761-exon-scaffold_313-1575043694:472868..473823Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1510915933:477229..477450TCONS_00058761-exon-scaffold_313-1510915933:477229..477450Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1510915933:476675..476857TCONS_00058761-exon-scaffold_313-1510915933:476675..476857Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1510915933:475769..476611TCONS_00058761-exon-scaffold_313-1510915933:475769..476611Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1510915933:473902..474463TCONS_00058761-exon-scaffold_313-1510915933:473902..474463Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1510915933:472868..473823TCONS_00058761-exon-scaffold_313-1510915933:472868..473823Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1491911889:477229..477450TCONS_00058761-exon-scaffold_313-1491911889:477229..477450Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1491911889:476675..476857TCONS_00058761-exon-scaffold_313-1491911889:476675..476857Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1491911889:475769..476611TCONS_00058761-exon-scaffold_313-1491911889:475769..476611Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1491911889:473902..474463TCONS_00058761-exon-scaffold_313-1491911889:473902..474463Clytia hemisphaericaexon
TCONS_00058761-exon-scaffold_313-1491911889:472868..473823TCONS_00058761-exon-scaffold_313-1491911889:472868..473823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:472868..477450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0353795	0	0.253321	0.121207	0.954819	0.176722	0.371383	0.156631	0.365164	0.327482	0	8.59183e-07	0.327004	0.255426	0.000510469	0	0	0	0	0	0	0	0	0.091269	0.373212	0.244272	0	0	0.096882	0.0441857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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