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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058756 ID=TCONS_00058756|Name=TCONS_00058756|organism=Clytia hemisphaerica|type=transcript|length=2575bp
CTGGGTTACAAATTATCCAGCTCTGTCAAACTATTCTACATTGAAATAAG
TATTTTTAACGTTGAAGGTAATTTTGATTACAATGTACATTTCTATCTTC
GGTCATGTaattctttgtttatttttttcaggtaaaacaaaattaaaatt
aaaattaaaattatcctcaaaaatatatttatcaaaattttggacaattt
GTAGACTTTGTTGGAAAGCTGGAAAATTGTTTTGCATCAtggATGATTCT
GATGAATTTTGCTCCAGTGATTTCGAAGACGACTCAAGTTATATTGATTC
TgatgaaattgactttgatccTGAAGACTATTTCGAGTCAAATTACGACA
TCTACCCAAAAGATGAAAAAACACCAAATATTGTCGATTATGCCGGAAAG
GGTCTTCTCTCTTTAATTCAGAGAGAGACCAAGGACAAGAAAGCAGGTGC
TATCAACGGTTCACGCAAATGGACAGAAGTTGAAGAGAAATGGGGATATG
ATAAAAGTTGGGAATGGCATGATGATACCCCTCTAATAGCCGCCGCACGA
AATGGTCATTTTGAAGTTGCTCATTATTTATTGTCTGTTGGTGCAGATCC
TACTTTAGAGAGCTGCCATGTTTGTGATGAAAACGGGAATGCGTCCAAAG
CTGCTTCAGCTTGCATACAATCATTGGTGAGAACAAAAGATCAGATTCTC
CAAGGTAGTTGTTCTTACCTAAGCACAGATCCCAAAGATTCTGAAATCGC
TGCTCTTGATATAATCTACAGAATCCACGAATTCCAAAAGCTCATCAATG
TGTTGAAAGTTGCTGAACAATACTGGAAGAAAGCATCATACGCCTCATCA
AGGTTCTCCAAAGAACGAAAGGAAAAGCTGGAGAGATGTCCCAATAAACC
AAATAATGAAAAAGAACTGAAAACTAAATTGGATGAGTTCACTGCTTCAA
AACCTGATATGGACCAACTCAAAGACCTGGCTGCTGAAATCACCAAGTTG
AGGAAAAAGAAGGAATCTCAGCAATCCAATAGCTTTAATTCTGTTTTTCA
ACAACTTTCTGTAAACAATGTGTGCGCGTTGAGTTTGAATTGTGACGGAA
ATCCACCGGCCAATGATTGCCAACATAAATGTTGCGGGAGGTGTTGTCCA
GGTCCATGTCGAAGACACCAGTTAAGATCGAAACGCGATGTTCCCAGTGG
TACAAAGTCTCGCAAGACGAATAACGACGCTCCTTACAATTCTACTATGA
AATCGTATTCACCTGGTAACGTTGATGCGTTCATCCAACAATGCACTGAT
TGGGACGAAGTTAATACCGAAGATATTATCTTGCCAACTGGTGAAGAATT
TCGCTGTGTTGTGCAGAAGAAATATTTCGGCGAAAACCATTATATCACTT
TAAGTCTTACTTATGCTTTTGGAATCTTGGTAAGAAAGGACAGTTCGCTC
CGTAATGAATGCAGTAGCATGAGTGGTTCGTTTGGAGACTTTGGTGATCT
TTCAAAATCAACAGCAGTCGACAAATTGTGTCGAAAATTGGCTGATTTTA
AGGATCATCGCAGACGCATGAAAACTCTTCAACCAATATTGGAGAAAGCG
TTCGCAGAGGGCTCTACATACCCAATGATTAAGGAGGACCGTTCACTTAA
AGTTCTTGTTTCCGATATGGCATCATTTGGTGACTTGAAGGAGGCTCAAA
GTCAAAAGCCACAGAAACAAAAAATCGGTGGTACTATTCGTGGATATGTT
AACACAGTACGTCATTTCAAACCAGGGTATTACTACACCAGCGTCATCAA
ACCCATGGAAGATTGTGATCCATTTGTGATGTACCACCATGAGAGTATCG
ATCCTCGTAAATTGATGGATCAAATTTTATTGATGTGTGACGATTATGAG
GATTATTTACCGAAAGTTGTGAATAGCATCAATCGATATGATTGGTGTGA
ATGGATGCATTACGGAGGAGACAGTTCTGGTGAAGATTGCAGCAAAGACG
AGAAAGCTCGCCGGTCAGACGACAGATGCTCCATTTATTTTTGTCCTACT
GAATCGGGATCCTTGTTGAAGAAAACTGTTAAACAAAGGTGGAAGATTAC
CAATTCAGAAGTGATTGATGAGCTGTCAGGATATGTTGGTGATGATGAGA
AAGTGATTGCTCTCGGTATCAAAACTGGTGGAATGAATTCTGGTGATTGG
ATATATGGGAAAGTGTTTGAAGATGAAGATAGTGGGCAGAATTTCGCACT
GGTTGTTAATTTCTGTTTGGGTGATCTGTTTATGGAGAGTATTCCTGATG
AATTGAAAAACATGTACCCTAACAAGAAATTCACTTCTGTTAGCAAAACC
GAACTGAAGTTCAATATTGCTGACTTTGAGAAATAGTTTTCTTTCAATCC
ACCACTTATGTTCAGTTTTTTCGTGTTCATGCCTTAGACGTTATCtaaac
taaaatttttaaatcttgtCGATTTTATTAACTACGACTTCACCTCTTAC
TACCTTTATCGCGAGCACTCtagattttcgtatttttttaggaaaaatga
aatttataatttattgaaaaaaatt Run BLAST on NCBI transcript from alignment at scaffold_313:469424..472369- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058756 ID=TCONS_00058756|Name=TCONS_00058756|organism=Clytia hemisphaerica|type=transcript|length=2946bp|location=Sequence derived from alignment at scaffold_313:469424..472369- (Clytia hemisphaerica)
CTGGGTTACAAATTATCCAGCTCTGTCAAACTATTCTACATTGAAATAAG
TATTTTTAACGTTGAAGGTAATTTTGATTACAATGTACATTTCTATCTTC
GGTCATGTAATTCTTTGTTTATTTTTTTCAGGTAAAACAAAATTAAAATT
AAAATTAAAATTATCCTCAAAAATATATTTATCAAAATTTTGGACAATTT
GTAGACTTTGTTGGAAAGCTGGAAAATTGTTTTGCATCATGGGTAATTTA
AAAAAAATTCAAACTTTGTAATTTTTAATTTTAGATTTGGATTTCTCCTA
CCCTACGAACATCTTACTATTTTTTTACTGCCCCCTTAAAATCTCAAGAT
TGAAAATTTCTATGACTAGATATGGATAATCGGAAACGATTTGGTCAATT
AGTATAGTGTCAACTTTTCAGATATTTTGCTTTTAGATGATTCTGATGAA
TTTTGCTCCAGTGATTTCGAAGACGACTCAAGTTATATTGATTCTGATGA
AATTGACTTTGATCCTGAAGACTATTTCGAGTCAAATTACGACATCTACC
CAAAAGATGAAAAAACACCAAATATTGTCGATTATGCCGGAAAGGGTCTT
CTCTCTTTAATTCAGAGAGAGACCAAGGACAAGAAAGCAGGTGCTATCAA
CGGTTCACGCAAATGGACAGAAGTTGAAGAGAAATGGGGATATGATAAAA
GTTGGGAATGGCATGATGATACCCCTCTAATAGCCGCCGCACGAAATGGT
CATTTTGAAGTTGCTCATTATTTATTGTCTGTTGGTGCAGATCCTACTTT
AGAGAGCTGCCATGTTTGTGATGAAAACGGGAATGCGTCCAAAGCTGCTT
CAGCTTGCATACAATCATTGGTGAGAACAAAAGATCAGATTCTCCAAGGT
AGTTGTTCTTACCTAAGCACAGATCCCAAAGATTCTGAAATCGCTGCTCT
TGATATAATCTACAGAATCCACGAATTCCAAAAGCTCATCAATGTGTTGA
AAGTTGCTGAACAATACTGGAAGAAAGCATCATACGCCTCATCAAGGTTC
TCCAAAGAACGAAAGGAAAAGCTGGAGAGATGTCCCAATAAACCAAATAA
TGAAAAAGAACTGAAAACTAAATTGGATGAGTTCACTGCTTCAAAACCTG
ATATGGACCAACTCAAAGACCTGGCTGCTGAAATCACCAAGTTGAGGAAA
AAGAAGGAATCTCAGCAATCCAATAGCTTTAATTCTGTTTTTCAACAACT
TTCTGTAAACAATGTGTGCGCGTTGAGTTTGAATTGTGACGGAAATCCAC
CGGCCAATGATTGCCAACATAAATGTTGCGGGAGGTGTTGTCCAGGTCCA
TGTCGAAGACACCAGTTAAGATCGAAACGTAAGAAATTTGAAATCTAATT
CCAATTTATCATGGGCTTTTTTAAAGATAGACGTTGAGGTGGGAGTTCCT
TTATTACCAAAAGTTAAAGCCTTGCTTGTTTTGTGTCAACGTTATCTTTC
AGAGGCTATAATTTTCGATCATTTGTCCATAAATGAATTTTCCCTTTATA
CTTAGGCGATGTTCCCAGTGGTACAAAGTCTCGCAAGACGAATAACGACG
CTCCTTACAATTCTACTATGAAATCGTATTCACCTGGTAACGTTGATGCG
TTCATCCAACAATGCACTGATTGGGACGAAGTTAATACCGAAGATATTAT
CTTGCCAACTGGTGAAGAATTTCGCTGTGTTGTGCAGAAGAAATATTTCG
GCGAAAACCATTATATCACTTTAAGTCTTACTTATGCTTTTGGAATCTTG
GTAAGAAAGGACAGTTCGCTCCGTAATGAATGCAGTAGCATGAGTGGTTC
GTTTGGAGACTTTGGTGATCTTTCAAAATCAACAGCAGTCGACAAATTGT
GTCGAAAATTGGCTGATTTTAAGGATCATCGCAGACGCATGAAAACTCTT
CAACCAATATTGGAGAAAGCGTTCGCAGAGGGCTCTACATACCCAATGAT
TAAGGAGGACCGTTCACTTAAAGTTCTTGTTTCCGATATGGCATCATTTG
GTGACTTGAAGGAGGCTCAAAGTCAAAAGCCACAGAAACAAAAAATCGGT
GGTACTATTCGTGGATATGTTAACACAGTACGTCATTTCAAACCAGGGTA
TTACTACACCAGCGTCATCAAACCCATGGAAGATTGTGATCCATTTGTGA
TGTACCACCATGAGAGTATCGATCCTCGTAAATTGATGGATCAAATTTTA
TTGATGTGTGACGATTATGAGGATTATTTACCGAAAGTTGTGAATAGCAT
CAATCGATATGATTGGTGTGAATGGATGCATTACGGAGGAGACAGTTCTG
GTGAAGATTGCAGCAAAGACGAGAAAGCTCGCCGGTCAGACGACAGATGC
TCCATTTATTTTTGTCCTACTGAATCGGGATCCTTGTTGAAGAAAACTGT
TAAACAAAGGTGGAAGATTACCAATTCAGAAGTGATTGATGAGCTGTCAG
GATATGTTGGTGATGATGAGAAAGTGATTGCTCTCGGTATCAAAACTGGT
GGAATGAATTCTGGTGATTGGATATATGGGAAAGTGTTTGAAGATGAAGA
TAGTGGGCAGAATTTCGCACTGGTTGTTAATTTCTGTTTGGGTGATCTGT
TTATGGAGAGTATTCCTGATGAATTGAAAAACATGTACCCTAACAAGAAA
TTCACTTCTGTTAGCAAAACCGAACTGAAGTTCAATATTGCTGACTTTGA
GAAATAGTTTTCTTTCAATCCACCACTTATGTTCAGTTTTTTCGTGTTCA
TGCCTTAGACGTTATCTAAACTAAAATTTTTAAATCTTGTCGATTTTATT
AACTACGACTTCACCTCTTACTACCTTTATCGCGAGCACTCTAGATTTTC
GTATTTTTTTAGGAAAAATGAAATTTATAATTTATTGAAAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058756-exon-scaffold_313-1575043694:472128..472369 | TCONS_00058756-exon-scaffold_313-1575043694:472128..472369 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1575043694:470992..471933 | TCONS_00058756-exon-scaffold_313-1575043694:470992..471933 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1575043694:469424..470814 | TCONS_00058756-exon-scaffold_313-1575043694:469424..470814 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1510915933:472128..472369 | TCONS_00058756-exon-scaffold_313-1510915933:472128..472369 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1510915933:470992..471933 | TCONS_00058756-exon-scaffold_313-1510915933:470992..471933 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1510915933:469424..470814 | TCONS_00058756-exon-scaffold_313-1510915933:469424..470814 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1491911889:472128..472369 | TCONS_00058756-exon-scaffold_313-1491911889:472128..472369 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1491911889:470992..471933 | TCONS_00058756-exon-scaffold_313-1491911889:470992..471933 | Clytia hemisphaerica | exon |
| TCONS_00058756-exon-scaffold_313-1491911889:469424..470814 | TCONS_00058756-exon-scaffold_313-1491911889:469424..470814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:469424..472369 - |
Blast
The following BLAST results are available for this feature:
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