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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058754 ID=TCONS_00058754|Name=TCONS_00058754|organism=Clytia hemisphaerica|type=transcript|length=1243bp
AACAAttataaaacaacaaaaaacaaacaaagaaaaaaaggaacGATGAC
CACATTACAGCTTGTGGGGATGACAACCTTTAAATAAACCTTCGAATCAT
AACGATAAGGAAAACGGATATTGTGAATCTGAGGGTAGTGATTCTGACGA
GTTTAGTTACGATTGCGATGACGGAGAAAATTATTCTGATGAAATCAATC
CACCGGCAGTCGATTTTGCTTCCAAATGCATTCTCAAATTTTTCGATGGA
GTAGAGAACAAACCAGGAATTGACTCTTTTATAAATGCTTCACGCAAATG
GACAGAGATTGACCCGAGTGACGGCTATGATAGAATTCGGAATTGGCGTG
ATGATACCCCTCTAATAGCTGCTGTGCGAAATGGTCATTTTGAAGTCGTC
CGTCGTTTATTAGTACTTGGTGCTGATCCAACACTTTGGTGTCGACATTA
TGACCAAAATGAATGGGCGTCTAGTATTGCTTTAAGGCGTTTTGAATCTT
TCAACGAAGAGAGAGACCGTTACCTTCAAGGTGATTTTCCGCCGTTTAGT
TCATTCAGGGGAGAAAAACTTGACCCAGAGATACTTGCTTTGGATAACCT
ATACAGAACTAACGAATTCCAGAATATCATCGTTGTTTTGAGAATAGCTG
AGCAGTACTGGGAACGAGCTAGTTATTATCCATTTGGTGATATAACCTGG
GGACGCGATAAAGAATTGCTCAAATGTCCCAATAAACCTTCTAATGAGAC
AGAAATGAGAAGAAAGTTGAATGGAGTTATTCGATCACTGCCCGATATGA
GACGACTAGAGCCCCTTGCACAAGCCATTGTTCaatttaggaaaaagaaa
gAGTCTGAACGTTTGTTGGCCATCAATTCTTCTTTGCAACAGTTGTTATC
AANTCATCTGGTGATATAACCTGGGGACGCGATAAAGAATTGGTCAAATG
TCCCAATAAACCTTCTAATGAGACAGAAATGAGAAGAAAGTTGAATAGAG
TTATTCGATCACTGCCTGATATGAGACGACTAAAGCCCCTTGCACAAGCC
ATTGTTCaatttaggaaaaagaaagAGTCTGAACGTTTGTTGGCCATCAA
TTCTTCTTTGCAACAGTTGTTATCAACGGATGAAGATAATACTTTGAGCT
CAGATTATCCAGAAAATGGAGCAGCAGCGAACACCGTTATGCACAAACTG
GGACCAAGTCAACACACAAGATTTTGTCCTCCCGACTGGCGAA Run BLAST on NCBI transcript from alignment at scaffold_313:463819..468584- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058754 ID=TCONS_00058754|Name=TCONS_00058754|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_313:463819..468584- (Clytia hemisphaerica)
AACAATTATAAAACAACAAAAAACAAACAAAGAAAAAAAGGAACGATGAC
CACATTACAGCTTGTGGGGATGACAACCTTTAAATAAACCTTCGAATCAT
AACGATAAGGGTAAGAATAACTTATTGATGTCAAGTACAATCCGTCACTT
CTCTGATCAAATTCAAAATGATATCCCGTCTACTAGCAAAAGGTCTATGT
AGATGACATTATCCTCTATTAGGCGAGACCAATTTAATTTCTTGTTCTAC
GGGCCCGTCCGACCCTATTTTTGCTAAAATCAAAAAAATAATAATATTGA
ATTTCCACTACATAATATTTTACACACTAGTTATTTGTAAAAATCAAATT
TGAATAAAGCTGAAAATTAATTCAAGAAATGAAATGAAAAATTTATTCTT
ATTTTACCGACCGACCGACCGACCGACCCATATTTTGCTAACGATCTGCC
CGTAGAACAACAAATTAAATTGGTCTCGCCTTAGTGATAGTAAAACGTGG
CAAAAAACCCTTAGAGTTTAGTAGAGCCCAAACCTTGCATGTCTGAATTC
CAGACCCAAAAATGTTTCTATGTGCAATCCTATTGCTGTTTTTAGCACTC
GTCAACCGTAATAAAGGAAACTAAGGAGGATGGGTAAGCTGAATTTTCAA
GTTAAAAGCGCATTTGTATATTTCAATACAAAGTAGATGATTCAGACGTG
CTAGTTGATTTTAAGTTCTGCATTCTCATGATAATTCACAATTATCAATT
TCGATTCCTTCGAATCCCATTTTTACTCGCAAAGTTCACGTTACAAATTT
TCTGGTTGGCCAAGTAGAAAACGTCTAATTACGTTTTTACAAGAAAGATT
AAATGTTCTTAATATCGTTGTTTTTTTCTATTTTCTTATTACATTATTGG
GCTCTTCCAGAAAAAAAATTGAATATGGGGGTGGATGATGTAACAATTTT
CAGTGACTTACCCCCCGGACAAAGTGACTTTTGGCCCCCCAGACAAGCAT
CAGTTGACCCCCGGACAACCCAAATTACCCCCGGACAGAGCAAATTTACC
CCCCGGACAAGGAAAATTTTGTTGATTTTTCGCTACCACACGGACAATAG
TACGGACATTTTCTGGAAGAGCCCATTAGCCTTTAGATAGGTCCAGCTGA
ATATTTTCTTTTTTTTATTCTCTTCCAAGAAAACGGATATTGTGAATCTG
AGGGTAGTGATTCTGACGAGTTTAGTTACGATTGCGATGACGGAGAAAAT
TATTCTGATGAAATCAATCCACCGGCAGTCGATTTTGCTTCCAAATGCAT
TCTCAAATTTTTCGATGGAGTAGAGAACAAACCAGGAATTGACTCTTTTA
TAAATGCTTCACGCAAATGGACAGAGATTGACCCGAGTGACGGCTATGAT
AGAATTCGGAATTGGCGTGATGATACCCCTCTAATAGCTGCTGTGCGAAA
TGGTCATTTTGAAGTCGTCCGTCGTTTATTAGTACTTGGTGCTGATCCAA
CACTTTGGTGTCGACATTATGACCAAAATGAATGGGCGTCTAGTATTGCT
TTAAGGCGTTTTGAATCTTTCAACGAAGAGAGAGACCGTTACCTTCAAGG
TGATTTTCCGCCGTTTAGTTCATTCAGGGGAGAAAAACTTGACCCAGAGA
TACTTGCTTTGGATAACCTATACAGAACTAACGAATTCCAGAATATCATC
GTTGTTTTGAGAATAGCTGAGCAGTACTGGGAACGAGCTAGTTATTATCC
ATTTGGTGATATAACCTGGGGACGCGATAAAGAATTGCTCAAATGTCCCA
ATAAACCTTCTAATGAGACAGAAATGAGAAGAAAGTTGAATGGAGTTATT
CGATCACTGCCCGATATGAGACGACTAGAGCCCCTTGCACAAGCCATTGT
TCAATTTAGGAAAAAGAAAGAGTCTGAACGTTTGTTGGCCATCAATTCTT
CTTTGCAACAGTTGTTATCAANTCATCTGGTGATATAACCTGGGGACGCG
ATAAAGAATTGGTCAAATGTCCCAATAAACCTTCTAATGAGACAGAAATG
AGAAGAAAGTTGAATAGAGTTATTCGATCACTGCCTGATATGAGACGACT
AAAGCCCCTTGCACAAGCCATTGTTCAATTTAGGAAAAAGAAAGAGTCTG
AACGTTTGTTGGCCATCAATTCTTCTTTGCAACAGTTGTTATCAACGGAT
GAAGATAATACTTTGAGCTCAGATTATCCAGAAAATGGAGCAGCAGCGAA
CACCGGTAACTTTTTTCTCTTCTCTTAAGGGCTCTGACCATAGTGAATTT
CTGATATTTGCCACTTACAAAATGTTAAGTTCTACTTGATGTAGCCCANC
GGTAGATGGTGTATATTTTATCGAACTAAAATTATTTTTAAAAGAACTTC
GAAACCAAAAGCTTAATTACCCATTAAAACTTAGCACTTTTTAAAAAAAG
AAGGTGGTACAACATATTATTAACGTCTTTTTAGTAAGTTCATAACGTCA
TTTTTGTAATTACATTCTTAATTACTCTTAAGGGATTTGATTAAAAAGCA
ATTTGTAAAAGCAATTCTTTGTTAAAATTGTTAAAGAACCTAAAACATAA
CTTTTATGTTCAGATACTAAAATCAAATTTTGGACTATTGTCAGAGCCCT
TAAGGGACCATTCGCGTACGCTCTAACAGTNATTCGCGTACGCTCTAACA
GTATCCCCCAGGTTCCCCCCTTTTTTTAATTTTTGCTGAATTTGAAATTA
GTATCTGACTTAAAATGTTGTATAATGTAAGTATAAAAAAACTTATTTGA
ATCGTTTACACTATACTCTGATGCCATATAAAAGCATCCTTCATTCTATA
ATTGAAATTAAATTTTTATTTAACTTTTGCTGCTCTCAATCCTTTCAATC
AACCAAAATTCATTAAAAACTAGAGTTAAACAAACTGTAACTTTTTTAGT
TGTGTTAAAATTTTTCTGTCCATAACGTTCATCATATAGGCTATGTTACA
AAGACTCTAGGCGCGCCTAATACAATGAGTTTTATATTTAGTCTAGTTTA
TCAACTAGTTTTATGAATTTGATACATTTTGCCAATTTAGTTCAAGAAAC
TTAACTTACGGTGTCTTAGAATGAGAAGAACTTGTTTTCATTTTCAAGAG
TCTAAAGTGTGGTACATAATTCATGATATTCATGACGTAATGTTATCTAC
GGAAAGACCCGGTTTTTGCCAGTAGTGGCAAATTTTATATAACTTTTGTC
TAGTTTATATTTGCCACTACTGGCTAAAACCGGGGTCTTTCCGTAGATAT
TATTACGTCATGAATATCATGAATATAAGTGATTAATAAGAGGAATGTTC
TTTGAATAAAAACATCCACAGATTTTATTTAGCGTCCCTTGTATGCAGTA
TCCTATGCATATAACTTTTAGCATTTTTACGGATTGCCAATTTAGGGGGG
GGGGGGCCCCCTTTTTCAGAAAAAAAGGGATTTTCAAGTTTGTATTGACA
CCAATTTAGGGGGTGGGTCCCCCCTTTTGTAGAAAATTAGGGTTTTCAAG
TTGGTATTGATACCAATTTGAGGGTGGTGGTGTCTACTACTTTCAAATCT
CGAAAAGTCTGGTTTTTGGACCCTGGGTTGGTATCCTAGACCCTGACCCC
CCTGTAATAGCTTGATATATGCATAACATTAGTAAGATGGGTTAAAATTT
TATAATATTTTGATTTTTCAAATAGAAAGTAAAAAAAAAACAGTTTGAAA
AAATTCGCGTACATAACATCTTCTTCGTACGACCTTTTGAATGGAAGTAA
AACTCTGTTATTCTTCCTTATAATATAAGGAAAGTTTCAAGTCTGACTTT
TCTGTTCCACAATCATGAAATTTCATAAAAATAGAAACTCCCTGCAAAAT
TTTAAACACCACAAATGATTTTTAAGTGTTCTAATTTAGTTCTAGAACGT
AGAGTTCTAGCTCTGGCTTTCTCAAGACTTAGGGTGCCTAAGGATCTCAT
AACCCAAAACCCCAAACTGTTCCATTAAGGCTGAGATACTTTAGGCGTAC
AAACTTTCGCGAGCAGAAACTTTCGCGAGGACGAAAAATCGCGAAATTCA
CGACATTTACTTTCGCGAATTTAACGGAAAAATATTTTTCGCGAGCATAA
ACTTTCGCGAATCAAGACGTAAAATTGAGAATTTTCACATGAAAAAATGG
CTCAGAGATACAAATACTTCTTCGGTTGGCTTGACACATTTGTCCTTTGA
CTTATTAGTCTTTTAGCAGGCTAAAAAGTGCCATAAAAGTTACATTTTAT
TCAAAGTTTGAAGTTTTACAGATTTTCTATTTTTCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATTTTTCGCGAGCATAAACTTTTGCGAATGGC
CCTTCCTAGAATTTTTAAAGATATTTACTTTCGCGAAAAGGGCCAAAATT
CGCGAAAATCGCGAAAATCGCGAAAGTTTCTGCTCGCGAAAGTTTCTACG
CCTAAAGTAAAGCCTGGAAGCTGAAATCGCAATTCTTGTCCATTCTTTAA
ATTCTGAACAACTTGAAAATAACCAAAATTCTCAATATATTCCGAACTTC
ATTCCAAGGTGACACGCCCAACAAAACAAAAAAACATGAAAAGATTGTCC
TCCCATACAACCCATACATGAAGTCTTACTCATCAAGCAACATTGATTTG
TTCGAACAGTTATGCACAAACTGGGACCAAGTCAACACACAAGATTTTGT
CCTCCCGACTGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058754-exon-scaffold_313-1575043694:468475..468584 | TCONS_00058754-exon-scaffold_313-1575043694:468475..468584 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1575043694:466330..467405 | TCONS_00058754-exon-scaffold_313-1575043694:466330..467405 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1575043694:463819..463875 | TCONS_00058754-exon-scaffold_313-1575043694:463819..463875 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1510915933:468475..468584 | TCONS_00058754-exon-scaffold_313-1510915933:468475..468584 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1510915933:466330..467405 | TCONS_00058754-exon-scaffold_313-1510915933:466330..467405 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1510915933:463819..463875 | TCONS_00058754-exon-scaffold_313-1510915933:463819..463875 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1491911889:468475..468584 | TCONS_00058754-exon-scaffold_313-1491911889:468475..468584 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1491911889:466330..467405 | TCONS_00058754-exon-scaffold_313-1491911889:466330..467405 | Clytia hemisphaerica | exon |
| TCONS_00058754-exon-scaffold_313-1491911889:463819..463875 | TCONS_00058754-exon-scaffold_313-1491911889:463819..463875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:463819..468584 - |
Blast
The following BLAST results are available for this feature:
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