TCONS_00058743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058743
Unique NameTCONS_00058743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058743 ID=TCONS_00058743|Name=TCONS_00058743|organism=Clytia hemisphaerica|type=transcript|length=174bp
GAACAGCTCATTATCTCCatagtttttaggattaggGAATCCATATCTCC
ACATACTGTTTCTAGCAGGTGGATTTTCCATGTAACCATGGCAATGAATT
gtgtaaacaaaacaaaatgtgacgatcaaaagtttcaaaatcatGATGGC
TGATATCAGATCTATACTGATTCG
Run BLAST on NCBI

transcript from alignment at scaffold_313:124194..131396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058743 ID=TCONS_00058743|Name=TCONS_00058743|organism=Clytia hemisphaerica|type=transcript|length=7203bp|location=Sequence derived from alignment at scaffold_313:124194..131396- (Clytia hemisphaerica)
GAACAGCTCATTATCTCCATAGTTTTTAGGATTAGGGAATCCATATCTCC
ACATACTGTTTCTAGAAGGTGGATTTTCCATGTAACCATGGCAATGGATT
GTGTAAACAAAACAAAATGTGACGATCAAAAGTTTCAAAATCATGATGGC
TGAATTGGTAGGAAGAAAGGTTTAAAAGAAAAATTGATTTTTCTATGCAA
AATATTTATACCGATTTTATAGTAAATTTTGAAAGATTCAAACAAATGAA
AATGTTGCAAAGTAGCTTTTAAAATTTGATCAGCAGTGTAAATAGAATTT
TGTCAGATTCAATCAGAAACTCTCAATTTCTATTGTGAAATTGATAATTA
AATTAAGATATTTAAAAGTATTTATTTTACCATTTGAAGTGTTTTAACTC
GAGTAAATAAATATGATCAATTTCACATCATCCTTGTTCTTTTAAAGAAG
AAACTAGCCAAAAAGTGCTCCCCGCCCGGGCACTAAGGCAAAATTGTGTA
CGGGGGCTTGCCGCTGGTCAGGGTTCCTTTTTTAGGCTATGAAGATATTT
GACAGGGTCAAAATTTTACAAACTCTTAAGATGTGGATTTGACAGGATCG
GTTTTTAGTCAGTTTTGCCATTTTTCAGGGAAAGGAAGGGAAAAATTTCC
AATTTTCTTTCTGACAGGCTTCCAAATTTACCTAGCATTCATATCTGAAA
GGGATCACGTTTCAAACTCTAGTGGTACATCCCATCCCCGTCGGTCGTCG
GGGATGTTAATGCCCCTCACGGGGCTCCTTAGCCCGGGAGGAGGCACTTA
TGGTCCGACCCAAGGCATGTGCCGCCCTTAAGGGTAGGCTTTTCGAGATC
CTCGAAATGCACTGTAAGGGTGTACTTTTGATAGAGAGCACTACAAGGGT
CTCTTTTTAGCTGGATACACTGTAAGGGTGTAATTGGGGATTGAATCACA
GACCTCTATAGATATACTTCCTATATACAATGTATAGCAATGTGACCTCC
CGGTTATTGCCATAATGGCTTTATGGCAACTCCTGAACTTGGGCACAGGA
TGTACAGTTACACATTTTGTGGATTGCATTGTGGAATCACAAGAGTGCTC
AAACTGCGAGCAGCCTATAAAGAAACTTTTTTCGCTAGAGGATGAGCTGA
ATAGCAAGTTTGACAGTAAAAATCTGATCTATTTTTACAGTTTTGACTTG
CAACCATTCTAATTTGTTTTGCACATTGTATCAACATCTCAGCTTCATTT
TCAGGTGGAATTCAGCAAAACAAAATATGAAATCAAAGTAAACTGTAAGG
GCTGCGCTGTAAGCTTCTGATTTTAAATGCAATTTTTTGGTGGCACATAT
TGCTGTTTAAAAATCGAGGTAGGCTATTCAAGGCTACAACACAGTCATAG
TAGAAAATGTATGGACAACCCTCCCCATGCTCCCAGGGAGGGTGATGTAG
CAGGTTTGCGAGGGAACGATTCGGACGCACACACTTTCTATTCCTATTCA
ATGGCGTTAGTGTGTGAATTTTTGGGAATAAAATCTTTCAAATAGACACT
TTTTTGAGAGGGGGTATACAAATTATTAGGACAAGCAAAACATCATTATG
GCCTAAGCACTGATGTTTCAGACAAATCTGAAAGGAAAAAAAACGTAAGA
AATAGACCCTTTTGAACAAGTTATTGACTGACGTTTATTTTTTTAATTGA
GTGAACATTATACAGTGATGGTAAAGTTTTAAATATACTTTTCCATTATG
ATGAAGTTGTACAATCATGGTCGTAATATTTGAGAAAAAGGGAAATTTAC
CGGGAAGTATAACCACAATCGATTTGTAACTGTTCTAGTAGTTTGGAAGG
ATAGAGTGTTAACTTTGAGTTTTAACATGAAACTTAAAAATGGTCCAATA
AGGCTCATAATAGAGCCTGGAAGTCTTTAAACCCGAGTCAAATTGAAATA
TGCGATTAAATTTAAGAGATGGCCCAAAATCAACTTTCTCGCCCGAACTC
CAAATTTCGAAAAACGAGGAAATAAGTTTTATTCTCAATAGAGTTCGACC
ATGAAGTTGTAGTAACAATTTTACCTTAATGTGCAATTTGTTTCCATAGC
CGATGCCCAAAATTGTTTGTGTGGTTGCGATTTGATACGTGATAGGGAAA
AATAAAGGCGTTATGGCGTGATTAGAGCTAAACAGAAGAGATTTTTGCAA
TGTTCGTATGGTGATGGGAGTAAATAATTTGGCGTGATGGCGTCTCGGGG
AACCTAAGGCACTCCCGAATGGTCGCATGACTCTTGCATATTTCAGCCAA
AAGGGTTTTTTTTTAATTTGCTGACGTCAGCAAAGGTTTTTAATTTTTGT
TTCGTGGATCGCTTCCTTTTATTGATTTACACCCTTGGTGAAATCAAAAG
CTTTCTCCTAAAAGAAGTTATTCAAATTCTTATTTCTGTGACGTCATCAA
AATGGGGCGAAAAGGTTTTTTCGAAATTCTTCGATTTTTTAACAAGCGGG
ACCATCTGACCATGTCCTATCTTATTCTCTATATCAGAATGCTTCGAAAA
AACCTAAAAAACATTTACGTTAGGGTGCAAGCGTCATGCGACCATTCGGG
AGTGCCTTAGGTACCCCGAGGAGATGGCACGATGAGAGGTGTCGCTGGGT
GGCGTTGAAATTTCACCTTTCACAAACCTAAGTGCTTTAGATATTTCAAG
GCTCCCTTTTGATTTTTTGATTTCTTATAACCAACAGTATCGACTTATCC
GAAAGGTTCGATCAGGAACGACCAGAAAACTTTTATAAACTTCTTGGCAT
CCAATTCGATCAAAATCTAAATTGGCAAACTCATATCGATAAACTCTGTC
AATCAGTTTACGCAAAATTATACGTGCTACGCTATCTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTT
TTTTTTTTTACAATCGGTAACCTCACAGCAATCTATACATTACTTAGTTT
TCTTCGTTCGAGTTAGCAGTATTCAACTCTACAATTTCTCATCATGTTCA
AGTTTTAGCAACGTTTTTCGGGTCGTGCCAGTTTATCCTATTTCAAGCCA
ATATATTGTAGATTCTATGATCATGAGGTCTTGTGGTTATATTATTAATA
TTTACCTTACAATATTTACTTGATATTTTAGTCTGGTGGTCTGATCAACA
CTTAATTTTCGCAGGATTAGCCACTTCAATACTATTACAACTCAACCGAA
CTTTTCCTAATCAACTACTACAACACCAACAAGTTATACTTTCTGTTTTG
TTTTTTTCTGCAATTTTGCGAGCTCTGTCAGTATCCTTGAGTTTTGTTTT
GTGTTTTGTTTCTACAGTTTTACGGTTTTACAATCTGCAATTTTGTGAGC
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGAAACAATTCTTTAAATATGAAATGG
ATGGAAACGTGGTATCAGGATTGTAAGAAGTGGATAAGAAGGACGCAAAG
GGAGGTCATAAATATTTATTTAGCTAACGTAGGATTTTTATTGTAAAGTA
TTCTTTTCAATAATACTATATACAAAAATACTAAGATTCGAATTTCCTCG
AAAAATATACGATAAGAAAGATCTCAAAACACTATATTCCTTCTTTTGAT
TCTCAATTCAAACTTACTTGTGCCATATTGTACATTAAAAAATACTTTCT
AAGAAAGATATAAACTTTTTAAGTCTCCCTATATTGTGAAGGGGAAAACA
CAGTAATTTCTAAGGATTCTAAGTAAATATTATAAGTGATCTTATTTCAT
GGATATTATAAGAAATTACACATGATCTCATTGGATGCTGACGTCAGCAC
AGTTTACAAAATGTTCTTGTGCACCGTGACCCAGTCCACAGCCTTCTTTA
TCACAGCCCCAAGTGTTTCCACCTCGGTACCACCATTGTAAAACGCATCG
TTTACATTTCAAACCAGCAGGCAATTTCAATTTCATGTTTAGTTTTTGGC
GACCATATTTGAGAACCTGGAAACGAGTTCCATCAGCAGAGACGGGACCA
GAGACCTTGTGGAGAAAAATATATACTATACTTTAACACAATTTGACTCG
AAATTTTTATGTGCTTCTTAAATGACCTTTATTTCTGATTGGTTCGAATT
TATCAATACTAATAAAGTAATTAAATTTGAGTTGTAAAGCAAGTAACATG
GGAATAAAATCACGTGAACTTTGTCGAGTAATCACCACAGATATCTCAGC
CCGAAGGGCTAGATAGGCAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGA
AGCAAAAATTTGACTTTTTAAATTTCGTACCGATGGATAGGATCTAGCAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCACGTGACTTTGGTAGGAAATCCTTCCAAACCTAGGCTT
CACTTTTCGATAAAAGCCGCAAATCTAGCCCTTCGGGCTTTACAGATATC
TGTGGTAATCACATGTTTTGACTGCACTGCTATAATTTTGCAACCCATGT
ATTCTCAATTTTCGATTGAAGAAACAAAATCGACTTTGGATCTTTATATT
CTAAAAGACTAAGATATTACTAGAAATTTTTAAAAAGTAAAAAACCAATA
TAGGTAGGTTAATGTTTTATTGGGAGAACTTCTTTAAAAGATACGTATCA
AGCATCATAAAAGATTTATCTAAACTATAGATTTTTTCACAACTCACCAC
TTCCATGAGGTGACCATTCAATTTGCCGATCGCATTTCCTGAAGTTTTCT
TGTTATCGAATTCCCCGATACGGAATTCAAAATAACCCCGATGAGAGGTT
GTTAAGTAGATATCGACATCAATGACTTGTCCTTGTTTGTATGTTCTGGT
GATGATACCGTTGGCATATCGACCGCCATCCCTAGATGAAAATATTAATC
ATCCAAACTTGGTAAATATTGAAAGACACCATATTTGGTTTTGAAATTCA
CAAGGGCAGAAAGGCTATAGTAGACTGTTTAGTGTCTGTTTCAAATATCT
CTAACTTTAAAAGTCTCAATTTATAAAGATTTACAACGTGGAGTGTGTGG
GCCATTCAATAAACAATTTCTGTACAGATATTCATTGGCATAATTCAATA
TGGTAGAGATACAGGTTAGCTGAGTATAATATGAAGACTCACGCGTGATG
TTGAACTTTAGCGTGGTATGGATCTCCACAGACGCCACATTTCCCACCGT
TTCTTTTCATCACCATGGCACCTAGAAAAACACAGAAAAAAAACTGACAT
AATTGTTTTAGATAAACGAAAAACGTTGACTTTTTCTGGGAAAGCTCCTT
CTGTTACGTTCACCTCCAACGTATAATATGCTTGATCCTACTAGGGGGAG
ATGTATTTTTAATTATTACCCGCCACGTGACATGAGTTGCCCTAAGTGAA
GGAATTTACTTAATATGAGTATTTAGCCTTGGTCTCTCGGACGGGGGTCT
GGACCACTTACGCACCAAATTAAAAGGCTCTTTTCAAATATTCAAACCCA
TTTTATAAAATTATACGATTACCTCCACAAAACAGCTCATTATCTCCATA
GTTTTTAGGATTGGGGAATCCATATCTCCACATACTGTTTCTAGCAGGTG
GATTTTCCATGTAACCATGGCAATGAATTGTGTAAACAAAACAAAATGTG
ACGATCAAAAGTTTCAAAATCATGATGGCTGATATCAGATCTATACTGAT
TCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037000XLOC_037000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058743-exon-scaffold_313-1575043694:131345..131396TCONS_00058743-exon-scaffold_313-1575043694:131345..131396Clytia hemisphaericaexon
TCONS_00058743-exon-scaffold_313-1575043694:124194..124315TCONS_00058743-exon-scaffold_313-1575043694:124194..124315Clytia hemisphaericaexon
TCONS_00058743-exon-scaffold_313-1510915933:131345..131396TCONS_00058743-exon-scaffold_313-1510915933:131345..131396Clytia hemisphaericaexon
TCONS_00058743-exon-scaffold_313-1510915933:124194..124315TCONS_00058743-exon-scaffold_313-1510915933:124194..124315Clytia hemisphaericaexon
TCONS_00058743-exon-scaffold_313-1491911889:131345..131396TCONS_00058743-exon-scaffold_313-1491911889:131345..131396Clytia hemisphaericaexon
TCONS_00058743-exon-scaffold_313-1491911889:124194..124315TCONS_00058743-exon-scaffold_313-1491911889:124194..124315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:124194..131396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.46739	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top