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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058741 ID=TCONS_00058741|Name=TCONS_00058741|organism=Clytia hemisphaerica|type=transcript|length=1236bp
ATTCAATGACAACGTTTCCATCATCAGTTTTGGAGTTTAGTTGACAACTG
TCTTAAATTGGTTGTCATATTTTCGGTGACGGCAGATTTGCACCCTTCTG
TTTCACTGACGTCAATTTCGCCCGCTTTTGAAACATGAATGAGCTTGCGG
AACTGTCTTTTAGCCGTATTATTCCAATGGAAAAATATAATGACGTCCCA
TAGACCATTCGAATAACCAACCAAAGCGAACAAAATCAAATAGTTACTAC
TCATAGATTTGACTTGTTGTTGGACAGTCGCGCCACCGATTAATAAGAAC
CAAGTCAAGATATAGGAGGCTGCGATCCAAATACAAATCTTCAGTGATCT
TAACTGCCGCTTCTTCATAAGTTCTcgtcttttcttttgtttttcaccAG
ATCGATCAACAATAGTAGCTGCTATCTCCATGCATTGTCTTTTAACTGAT
CGGTATAAAATGTAATTAGATATTGTGGTGACCAGGCCCCCTGTGAAAGT
TACAACAAAAGCTGGAATGAAATAAGCGGACCAAAAAATACGATTGATTG
AAAAAACAATAGTCAAAGCAAAAGCGATACCAATACCTATGGCAGCAtgt
atttttgtcattttagcGTAGAGGAATGGCTTACGTATGGCTATAAATCT
TTCCACTGAAATTAAAATGGTTAAATGTACTTCGAGGCTTGTTGCTGTAT
CCCGTAGCAACGTGACGTATTCTAAAGCACTGGTGGTGTCCGATTTGATC
CAGAGCAATAATGCGACACGGATGACGATGAAGAGGCCCGTGAAAACGTG
CGTGATAAATAATAAACATAATAGAATGTAGTTAAATATCGATCGTAAAT
GCTTTGAAGATAAGATGACTGTCGAAGCAATGATGTTGGCGATAATCAGA
ATGCACGCTTCAATGAAAAACAAGATCCATAAATAAACCCATGACTCTGG
CACTGTTTCTGCACTGCTTACCATTTTCTGAGTTGAGCTGAATAGATATG
AAGATGATTTCGttattttttaaacttgaataaGGTGAAACTGCCAACAC
CAATAAATGCAATTCTTCTGGTTCAAGGTGTAACCTTCTTTAAAAGGTGT
GAAAAGTATGGTGCAAAAGAATGACAGTAGAATCTTTTGCTCAAACTCTA
GGTTACCAACAAACTATAACACAACTCTATGAACGAATAATTTTTTCCCA
ATAtcgttttattgatttttaaatctaatataaaaa Run BLAST on NCBI transcript from alignment at scaffold_313:35144..36452- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058741 ID=TCONS_00058741|Name=TCONS_00058741|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at scaffold_313:35144..36452- (Clytia hemisphaerica)
ATTCAATGACAACGTTTCCATCATCAGTTTTGGAGTTTAGTTGACAACTG
TCTTAAATTGGTTGTCATATTTTCGGTGACGGCAGATTTGCACCCTTCTG
TTTCACTGACGTCAATTTCGCCCGCTTTTGAAACATGAATGAGCTTGCGG
AACTGTCTTTTAGCTGTATTATTCCAATGGAAAAATATAATNGCCCGCTT
TTGAAACATGAATGAGCTTGCGGAACTGTCTTTTAGCCGTATTATTCCAA
TGGAAAAATATAATGACGTCCCATAGACCATTCGAATAACCAACCAAAGC
GAACAAAATCAAATAGTTACTACTCATAGATTTGACTTGTTGTTGGACAG
TCGCGCCACCGATTAATAAGAACCAAGTCAAGATATAGGAGGCTGCGATC
CAAATACAAATCTTCAGTGATCTTAACTGCCGCTTCTTCATAAGTTCTCG
TCTTTTCTTTTGTTTTTCACCAGATCGATCAACAATAGTAGCTGCTATCT
CCATGCATTGTCTTTTAACTGATCGGTATAAAATGTAATTAGATATTGTG
GTGACCAGGCCCCCTGTGAAAGTTACAACAAAAGCTGGAATGAAATAAGC
GGACCAAAAAATACGATTGATTGAAAAAACAATAGTCAAAGCAAAAGCGA
TACCAATACCTATGGCAGCATGTATTTTTGTCATTTTAGCGTAGAGGAAT
GGCTTACGTATGGCTATAAATCTTTCCACTGAAATTAAAATGGTTAAATG
TACTTCGAGGCTTGTTGCTGTATCCCGTAGCAACGTGACGTATTCTAAAG
CACTGGTGGTGTCCGATTTGATCCAGAGCAATAATGCGACACGGATGACG
ATGAAGAGGCCCGTGAAAACGTGCGTGATAAATAATAAACATAATAGAAT
GTAGTTAAATATCGATCGTAAATGCTTTGAAGATAAGATGACTGTCGAAG
CAATGATGTTGGCGATAATCAGAATGCACGCTTCAATGAAAAACAAGATC
CATAAATAAACCCATGACTCTGGCACTGTTTCTGCACTGCTTACCATTTT
CTGAGTTGAGCTGAATAGATATGAAGATGATTTCGTTATTTTTTAAACTT
GAATAAGGTGAAACTGCCAACACCAATAAATGCAATTCTTCTGGTTCAAG
GTGTAACCTTCTTTAAAAGGTGTGAAAAGTATGGTGCAAAAGAATGACAG
TAGAATCTTTTGCTCAAACTCTAGGTTACCAACAAACTATAACACAACTC
TATGAACGAATAATTTTTTCCCAATATCGTTTTATTGATTTTTAAATCTA
ATATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058741-exon-scaffold_313-1575043694:36319..36452 | TCONS_00058741-exon-scaffold_313-1575043694:36319..36452 | Clytia hemisphaerica | exon |
| TCONS_00058741-exon-scaffold_313-1575043694:35144..36245 | TCONS_00058741-exon-scaffold_313-1575043694:35144..36245 | Clytia hemisphaerica | exon |
| TCONS_00058741-exon-scaffold_313-1510915933:36319..36452 | TCONS_00058741-exon-scaffold_313-1510915933:36319..36452 | Clytia hemisphaerica | exon |
| TCONS_00058741-exon-scaffold_313-1510915933:35144..36245 | TCONS_00058741-exon-scaffold_313-1510915933:35144..36245 | Clytia hemisphaerica | exon |
| TCONS_00058741-exon-scaffold_313-1491911889:36319..36452 | TCONS_00058741-exon-scaffold_313-1491911889:36319..36452 | Clytia hemisphaerica | exon |
| TCONS_00058741-exon-scaffold_313-1491911889:35144..36245 | TCONS_00058741-exon-scaffold_313-1491911889:35144..36245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:35144..36452 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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