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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058740 ID=TCONS_00058740|Name=TCONS_00058740|organism=Clytia hemisphaerica|type=transcript|length=4569bpRun BLAST on NCBI transcript from alignment at scaffold_313:637329..655229+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058740 ID=TCONS_00058740|Name=TCONS_00058740|organism=Clytia hemisphaerica|type=transcript|length=17901bp|location=Sequence derived from alignment at scaffold_313:637329..655229+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058740 vs. Swiss-Prot (Human)
Match: NUP98 (Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4) HSP 1 Score: 375.555 bits (963), Expect = 1.573e-106 Identity = 240/744 (32.26%), Postives = 384/744 (51.61%), Query Frame = 1
Query: 1363 HVAR---VQPFNVQGMKTSVLYDDEEDYMPS-------PKTAVKNQQLFSNKSIFSSTYVDSARKQSSIFPKLDTSRQAXXXXXXXXXXSSLFQPMVNGENNAFERTTKMAKTSHLFKSGLVRPSQEMEQEVSTEPEFVKETVFVKCKTFDMVPYEQSLMFSKTHLLADASLTHGREYNTRWSADWTFVHPSKQVGLS----------SVEAKKALNPHIFSSSVHQPLPSFGLCDINVHVERVELKTK---EGMKQFIEECLDIALKYTNFDDKEGSNVLNSVTIKSGVEALDAYVETADAFKQIADDSDVGNFKVH-SDAWQLAAALWGKQETENDNNLYEIHS-----ARREALSKWLSNVTADQIENEIQTQLQDDGHLSAIFSLLSGRQITKACQVARENKEYRLGFLLAQAGGDHHLKHHLRSQLAQWDENNVDSFMNKDRLKLYVLLSGMMVWK-SNKNTINLCQDMDWKRSLAMHLWYYCSSTSTVLDAFTEYQSSFKGTNTYEPYAVFPSPEYVEDSG----------SKVKDLCYHLLALYCNRPHCLEKMLTPQTHTDNSLDYHLSWHLQRVLEDLGYTHMTDERHAFLQYSYASQLESLGLWYWAVYVLMHLRHDERREFHVREVLQRYCRVNEDDSIDLTEEEDLMVDKFRVPVEWIHEAKALHAKYAKEYYKEAMLLIRACQWNRAHQVILEHLAADSIIEDDHDTLRELLQDISLPERVCTVKNWRTGG 3474
H+A + P +Q MK S+L D+E+ M P A +Q++ S + S+++ R S+ L S+ + + P V+ + R + + P + S PE +TV + + +VP E+S+ + K LL D +L GR + W +WT + +Q+ S S+E NP P VH+E++ L+ + E MK + + L++ LK++ E + + GV + Y AD K+ + D H S W L ALWG + E D+ L E RR A S+WLS QIE E+ + Q + + A+FS L+G++I++AC +A+++ ++RL LL+Q G ++ L QL W + DSF+ +RL+++ LL+G VW+ S K IN+C +DWKRSLA+HLWY T+++ A + Y+ +F+ T+ + YA P P Y+E SG + ++D+C+HLL LY +R + L ++L P++ T + LDY LSWHL VL L YTH++ + LQ SYA QLES GLW WA++VL+H+ + RE VRE+L R+C++ E + + +E + K RVP +WIHEAKA+ A + + EA+ L +A WNR H++I+ HLA+D+II +++D L+ L+D++ PER +++W T G
Sbjct: 979 HIASSLGINPHVLQIMKASLLTDEEDVDMALDQRFSRLPSKADTSQEICSPRLPISASHSSKTR---SLVGGLLQSK---------FTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVPPPLTSVFTMPSPAPEVPLKTVGTR-RQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPF--------KVHLEKLSLRQRKPDEDMKLY-QTPLELKLKHSTVHVDE---LCPLIVPNLGVAVIHDY---ADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLK-ELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEV-SLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLE--TPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSG 1690 HSP 2 Score: 212.616 bits (540), Expect = 3.310e-55 Identity = 104/269 (38.66%), Postives = 167/269 (62.08%), Query Frame = 2
Query: 3482 LQYSYASQLESLGLWYWAVYVLMHLRHDERREFHVREVLQRYCRVNEDDSIDLTEEEDLMVDKFRVPVEWIHEAKALHAKYAKEYYKEAMLLIRACQWNRAHQVILEHLAADSIIEDDHDTLRELLQDISLPERVCTVKNWRTGGQVFLDYISLHEKLEDIKSGSYELSSYHLEDMETDVASLINRVSLLKVTTSRERLCQSEMARNCSNMLKIVFSEMKLRENDQDMDEENPKWSTSKVAPYVVKLPLPPDYYLKELRELLGNYANEL 4288
LQ SYA QLES GLW WA++VL+H+ + RE VRE+L R+C++ E + + +E + K RVP +WIHEAKA+ A + + EA+ L +A WNR H++I+ HLA+D+II +++D L+ L+D++ PER +++W T G V+LDYI + E L I+ + S LE + V SL +R+ ++ ++++RL QS+MA+ +N+L++V S + D + + +AP++ +LP+P DY + ELR L +Y EL
Sbjct: 1548 LQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLE--TPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQ--QVDCSGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLREL 1812 HSP 3 Score: 186.037 bits (471), Expect = 4.194e-47 Identity = 128/380 (33.68%), Postives = 194/380 (51.05%), Query Frame = 1
Query: 52 QRDTSNTSQYKVLSRPAARIKPRPISSPSLGKSRLFDGLEED------GDFSPHPVNRRQSVKKLVIKDKGHQELDSAYESQLKFRSFVNDDSELIAPSPQVVKTKNNESTDFMESPVK----------------HTGPVFESTI----------SELNSKDNTVTPI-MKKTKDYILTPLSESM---NDTIGADIPVPENEVFEIPKCKIILNRPEYYTRPPIKELNDRVGD-GTCLTRDFTVGREGYGEVTFLGETDVYGLNLDQIVFFRRREAEVYPDDYSNKPEVGEELNKPSEITLFKVWPNDKSTHTPVKTPDRLKSSGFIEKIEEKTLAMGAVFIDYRPKEGAWVFKVNHFTKYGIHEQFISEDVDPTTMKMK 1080
Q+ + + YK+ RPA R++P+ + + KS LFDGL++D G F P ++S+KKLV+K+ + L S VN DSE +A SP +N E F+ PV +T P+ + S NS D+T+ + M+ L SE ++++ D EN + + IIL + YYT P + +L + G C+ DFT+GR+GYG + F G+ ++ LNLD IV RR+E VY DD + KP VGE LN+ +E+TL VWP DK++ +K+PDRL + ++E + GA F +YRP+ G+WVFKV+HF+KYG+ + E+ P+ K
Sbjct: 541 QKALTTPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMP-----KKSIKKLVLKNLNNSNLFSP----------VNRDSENLA-SPSEYP-ENGERFSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDD-NQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTK 902 The following BLAST results are available for this feature:
BLAST of TCONS_00058740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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