TCONS_00058721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058721
Unique NameTCONS_00058721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058721 ID=TCONS_00058721|Name=TCONS_00058721|organism=Clytia hemisphaerica|type=transcript|length=2940bp
AAAGGGTCCTTTTAATTATCTTTTTTGTTTAGATGTAAATACAAGATTTA
AAATGTTCTAGTCCATATCAAAAGCAAACTCCATGACTAgaactaaaaaa
acaaacacaattcAAGATGActtaaactcaaaatttccaaataatgGACA
GCTACTCAAGTGATAGTAGCTTTAGCACTTTCCAAAGTGAAACCAGCAGT
CTCAGTGATGCAAATTCGTCACACTTATTTTCTCAACGCAGTAGTGGAAG
TGCAAGTGGAGGGGGCAAGCAAACAAATGTCAAGTGTCGTTATTTTATGA
ACAATGGGTATTGTTTTTATGGTGACCAATGTCAATTTTCACATATCAGG
CCTGGTGGTGCTAGTCCTTTGACGCACCAAAATCATGAAAGCTATGCAAG
TACAAGTGAAGATGATTCTGCTTTCCTACCATCTGCACCAACTTTTGTTC
CCAAACAACCGCAATCACCTCCACAACCACCTCCACAACCACAACCACAa
ccacaaccacaacaacagcaacagcaTCAGCATCAGCATCAACCACAATC
GCTgcaatcaaaatttaatgatcatcattcaaaaagacttttcaacAAAC
AATTTCCTTCGTCAAATAAACCTCCAAGCAATACTGATTTGTTAAATCAG
CAATTTCGAAGAATGAGGATAATGCAACAAGCCAATagtAAAGATTCTCA
AGAGAACTTTCAACAAAATGATCGAGGGAACAAAACTCTGCCGCATCTAC
AGATACCTTCCAACAAATTTGATCAAACATCTTTCTTTATGTCTCAGCAA
ATGAGAATGGACTCccagaaaatattgaaaactatCACAGCCTTCATCCT
TTAGAAGATATCAAAAGCCAAATTTCAgGACAAAGACTCTTTGGATATAC
TTCAACTTGTTATAGAGTTGTCAATTCTAAAGATGGCCTCCATTACTGTA
TGAGAAGGATACATGGTTTTCGCTTATTGAATCCAAAGGCTGTGAGCAGT
GTTGAGAAATGGAAGAAAGTTAGCAATTCAAATATTGTGCCTTTGAAAGA
AGCTTTCTCATCTAAAGCATTTAATGACACATctttgatTTTCATCTATC
AATATTACCCTGGTGCAGAGACAGTAATGGCAAGacatttcaaaaatatc
aatacaaCAAGAAGTCCACACTCTGAATCAGCCTTCTGGCATGGAGGGAA
TCAGAATTCCTCTGGATCAAGTTTTGGTGGTAAAGTGACACAAAAAGTGA
TGCCTGAGCGTTTGATATGGAGCTATGTGATTCAATTAACTGCTGCAATT
AGGCAGATACACAGTCATGGATTAAGTTGTCGTGCTATTGACCCATCCAA
GGTTCTGTTGATAGGAAACTCAAGgTTGCGTTTGAATTGTCCTGGCATTC
TGGATGTGCTAACAGATAATGAACCTACCTCACCTGCTATGGTCGTCCAT
TATCAACAAGAGGATTTGGTTGCACTTGGGAAATTGATTCTAGCTTTAGC
ATGCTATTCAATGGAATCTGTCCAACGTGAATCGATCCAGGCGTCAATAG
AGTTTGTTGCAAGGAACTATTCTAAAGACCTCAAAACCCTCATATGGCAC
TTGTTGAGCAGCAAAGTGACTTCAAATCAACATTCCATTAATGACGTCAT
GCCAATGATCGGAGCACGCTTTTACAGTCAACTAGACGTCACTCAATCGC
GTTCAGATCTTTTGGAAAACGAGCTGTCTAAGGAGATGGACAATGGTCGA
TTACTGCGGATCCTTGCCAAACTGGGAACAATTATCGAGAGATCAGAGTT
GAATATGGACGCTGAATGGTCAGAGACTGGAGACCGATATTTACTGAAAC
TATTTCGAGACTATTTGTTTCATCAAGTTACTGAATCTGGTGCAGCCTGG
ATTGATTTTGCACATATTGTGTCCACGCTTAACAAGCTCGACGCTGGCTC
GTCAGATCGTATCTGCCTCAGTTCTCGAGATGAATTATCTATTCTTGTCG
TGTCTTATCATGACCTGAAAGCTTGCTTAGAAACCGCGTTTTCAGAGCTC
ATTCAATCTTCAGAAATGTCTTAACATTCTAacgaaacaaaatacaaaat
ggtGGTCCATGGGTATATTTATGATATATTTGCATTGTGAAAAAATGCGT
ACAACGATATAATTTGAaggagaaaaaaggaaaactgcgtctaatttttt
tttgattgaacATACACATACAAAAAACTAGCTATGGaagaagtttttta
ttttatttttatttttcagtttattGTAAAAtaacaagtcttgtactttt
TTGCCcttgtatatttattttttcatcccGTAACACAAAGAACTTTTTAG
GGTACTTTAAAGAACGCGAGTACTATTACCTCgtataaaaaagtgaatta
atttttgttgcattttttCATTGGACGGAGAAAACTATATAATGTGTATA
TTACGTTCTGTAATTTTTATCATGGATTATTTAGTAGCATAtgtacaaaa
atacaatttattATAGTATGATATTGTATTTGTATTAAGATTTTGATCCG
TAAAACTTTATCTAGcgtacatttttcaaaaagcttttcgGAATCGCACA
CAGCTCCACGCTATTTTCTCGGTTTTTCAATAGCGAAATAATTCacaatt
aatttcaacttttctatTACAGCCCTAAAACTGATAGATTACGGACTTTT
TCTCGAATCTGTATCTTCATATATTTTGtggaaataattaattttttggg
tCTTCTTTTATATAGATTATATTACATAgtcgatttttttgaaaaatagt
gtATAATGAACCCTCGCCAAAACGAAAATTGAGATGAAACGTTTACATAT
TtgtaaaatgtaatttttagtACGATCTCATTAATAAGATATtaagaaat
acaaaaaataccATAAACGGAtaatttaaaaacttaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_313:509732..521958+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058721 ID=TCONS_00058721|Name=TCONS_00058721|organism=Clytia hemisphaerica|type=transcript|length=12227bp|location=Sequence derived from alignment at scaffold_313:509732..521958+ (Clytia hemisphaerica)
AAAGGGTCCTTTTAATTATCTTTTTTGTTTAGATGTAAATACAAGATTTA
AAATGTTCTAGTCCATATCAAAAGCAAACTCCATGACTAgaactaaaaaa
acaaacacaattcAAGATGActtaaactcaaaatttccaaataatgGACA
GCTACTCAAGTGATAGTAGCTTTAGCACTTTCCAAAGTGAAACCAGCAGT
CTCAGTGATGCAAATTCGTCACACTTATTTTCTCAACGCAGTAGTGGAAG
TGCAAGTGGAGGGGGCAAGCAAACAAATGTCAAGTGTCGTTATTTTATGA
ACAATGGGTATTGTTTTTATGGTGACCAATGTCAATTTTCACATATCAGG
CCTGGTGGTGCTAGTCCTTTGACGCACCAAAATCATGAAAGCTATGCAAG
TACAAGTGAAGGTTGGCTTTCTTACTTACAAACAAACTTGATTCTAACTG
ATTCTACCACTGAGCTGCTACTGCTACGAGTACTCTAATTGCACTGTGGG
TCAAAACATTCCTAAATAGAAAATTTCGTTGAATCAACCAACATCAAGTA
GTGTTACCATTAAGGTAACACTTTTCTGATAACTCCGATCAAAATTGGCT
AAATCCtcggtttataaaggtcagcaCATAatcatggtttcagccccccc
ccccccccccttttagggggggggggggaaaaaaaaatttttttttttcc
cccccccccccccgaatagggggggggggggaaaaaaaaatttttttttt
tcccccccccccccccgaatagggggggggggggaaaaaaaaattttttt
ttttcccccccccccccccttgttaGGGATTGGGGGCTAAtattttgcaa
ttctttggggttacctattcattggGGGTACCTAGCTGTTTTGATGGAGG
CTCTTGGGGCTgtgtatattttccaaattaaacatttcaaaattttcaaa
ttattcagtttttttacaCCAGCACCCAGTTTCCCCATCCGATTctcttg
tttcttttgtttcccaTCACGTCATCTTttactatatttttcaaatgtga
ttgtttttatttatagccgccatctttatagcataaaaacaaagcttttc
tcatgcttcaatgggggcacctgaaaagtgggctgaaaccatgataGGTC
GACACATAGATTGTTGTGTCTGGCATATTATTGTTGATAGTTAAACTTTT
ACACAactgaaataaaagaaaagaaaaccagAAAGTTTATAAGAAGAGAA
CCTTCCTTCCAATAAATCTTTAACCACAGTGATTTGTTTTACATTTTGTA
GATGATTCTGCTTTCCTACCATCTGCACCAACTTTTGTTCCCAAACAACC
GCAATCACCTCCACAACCACCTCCACAACCACAACCACAaccacaaccac
aacaacagcaacagcaTCAGCATCAGCATCAACCACAATCGCTgcaatca
aaatttaatgatcatcattcaaaaagacttttcaacAAACAATTTCCTTC
GTCAAATAAACCTCCAAGCAATACTGATTTGTTAAATCAGCAATTTCGAA
GAATGAGGATAATGCAACAAGCCAATGTAACTTGATTATGCTTTCTTTTG
TACTGCTATTGGGCAGCCATCTTTTTAATCGCATCAGTACAGTTTTCGTT
CATGTTCCCTATATTTTCTTTGCATCAAATGCAATCCTTTCTAACATGAC
CATGTCAAGATAACCTTCTAAGACATCATCTTCcttttttatggtttttt
tttttagagtAAAGATTCTCAAGAGAACTTTCAACAAAATGATCGAGGGA
ACAAAACTCTGCCGCATCTACAGATACCTTCCAACAAATTTGATCAAACA
TCTTTCTTTATGTCTCAGCAAATGAGAATGGTCTGTCTTatcatctttta
ttttttatttattttttgtgtatCCTTTGAGTTTCTCCCATAGTCTCAAA
GATATCTAAACTTAGTTGTTTGTCCATTGTTATTAGacaatcttcaattt
tcatttactCTCAGGAATTACTCAAACAACGCTCAGTTCTGTTGTCAGAA
AACAAAGATCTTGCTGGGCTTGGTAGGTTGAAATCTTCCTAGCAGTCTGC
TCAACCAAATCTTCaagattgtttttttgcttgtttaatCTTGGTACAAA
CTTTAATTTTCACCATTAATAAAAATGTACTCTTTCATCGTAGGACTCcc
agaaaatattgaaaactatCACAGCCTTCATCCTTTAGAAGATATCAAAA
GCCAAATTTCAGTAAGTTGGGCACTCTAAAGATTTCTGTCTGCATAGAAG
AAATCTAAATACTAATTTCGagcaaaaaatagcaaaattttcaaataatg
gGAGCTAATTTCCTTGAAATCATACCTCTAAGTCCCCAATAATGAGGTTA
ATGTTAAAGTGAGGTTCCAAAGATAAGTAACAGCTGGTAAATCTTGTATT
TTAGGCATCTCAGTCAACTTATTATTTAAGATtattaattaaaattaaaa
tcgtAAAGAAAATACAGAACACAgaaaatcacaatttttttaaaagattc
agtttttctcatttttcaggGACAAAGACTCTTTGGATATACTTCAACTT
GTTATAGAGTTGTCAATTCTAAAGATGGCCTCCATTACTGTATGAGAAGG
ATACATGGTAAGAagatattctattttttttgaaaaatctcacaAACTAG
GGAAAACTTGATGCAATAAAGATTTTCTTTGCATAGTTTTTTTATCCTCA
CGCTTTGATCTATTGTATTGTAATGTCTATATTTCGATTCCTTTTCAGGT
TTTCGCTTATTGAATCCAAAGGCTGTGAGCAGTGTTGAGAAATGGAAGAA
AGTTAGCAATTCAAATATTGTGCCTTTGAAAGAAGCTTTCTCATCTAAAG
CATTTAATGACACATGTGAGTATTTGTAGTATTATTTCTTGAAAGTTGCT
CTAAATTCAGTAAATTCAAgtaaaatacatatttttattaTGAGCACTCA
CAAGATTCTTGGATAAAATTCCAGATTGATAGACACCTTGtttaattttc
agctttgatTTTCATCTATCAATATTACCCTGGTGCAGAGACAGTAATGG
CAAGacatttcaaaaatatcaatacaaCAAGAAGTCCACACTCTGAATCA
GCCTTCTGGCATGGAGGGAATCAGAATTCCTCTGGATCAAGTTTTGGTGG
TAAAGTGACACAAAAAGTGATGCCTGAGCGTTTGATATGGAGCTATGTGA
TTCAATTAACTGCTGCAATTAGGCAGATACACAGTCATGGATTAAGTTGT
CGTGCTATTGACCCATCCAAGGTTCTGTTGATAGGAAACTCAAGGTTTGT
ACATGTGTCAACATTGAACTCTACTACACGTTACTATTAATTTTCTATTA
TTAGTTTTTAAGTTTCATTATAGGCTTCTCTATATTCACTTCTACTCTTT
CTTGCATAGTAAATCACTGGGAAAATTTTACACTTGGAcactttttcatc
aaatcctttaaaatataaattttagttTAGAGAAATCTCtggaaatctct
tttttttctaCAGTTTGAAACAAGCACCTTAAAACGTTTTATTGTTTATA
AAACGTTTTATTGTTTATAAAACTTTACAAAGTtaaaattgaagtttttt
ttgtttccagGTTGCGTTTGAATTGTCCTGGCATTCTGGATGTGCTAACA
GATAATGAACCTACCTCACCTGCTATGGTCGTCCATTATCAAGTCTGAAT
ACCCTTCATAAGATATAACTTTTATCTCTCATTATAAGATTTTACTAACC
TCAGTTTTGTTggttatttttctttgtaaagccataaaaaatgtttctaa
tGAAATGACTAACATCTGAacaatataatctgcagtgaAGACAAATACTT
TTGCACATCGATTTTTATCCAAGTTGTAGaccaaattttctttaaagCTC
ATAAGGTTGATTactttatttttctcttctttacTTTTTCAGCAAGAGGA
TTTGGTTGCACTTGGGAAATTGATTCTAGCTTTAGCATGCTATTCAATGG
AATCTGTCCAACGTGAATCGATCCAGGCGTCAATAGAGTTTGTTGCAAGG
AACTATTCTAAAGACCTCAAAACCCTCATATGGTATACACTTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTCTCTGTCAGGCACAAATTACATCGTTTTGAGCCATTTACATAAGGA
CGGGCGTGGTCAATTATTTCCCAGTTCAATTTAGGGGAGATATCCTTCAA
TTGGAGGTCCCACACGTAGTTTGAAAGTTCGGTTGATTTCTTCTTGTCTT
CATTCCTGAACGTATGTTTTTGCCTTCCTCGGTATCGATGAACGTATGTT
TGTGGCCATACCAACGTTGTTTGAAAGAATTGGCAGTTAAACCAATGTAG
TGTTTGCCTTCCTCGGTATCGAAAATTTAAATTGGCTCTGATTTCATTGA
GCACTCTGCAgcatcaatcacaaacaaatcGATTCTTGGATATAATTTAA
ATTAACTTTTTCCAAATTGATACACAGCTCGTTCAATTTTCAGCTTTGAT
TTTCATCTATCAATATTACCCTGGTGCAGAGACTGTAATGGCAAGacatt
tcaaaaatatcaatacaaCAAGAAGTCCCCACTCTGAATCAGCCTTCTGG
CATGGAGGGAATCAAAATTCCTCTGGATCAAGTTTTGGTGGTAAAGTGAC
ACAAAAAGTGATGCCTGAGCGTTTGATATGGAGTTATGTGATTCAATTAA
CCGCTGCAATTAGGCAGATACACAGTCATGGATTAAGTTGCCGTGCTATT
GACCCATCTAAGGTTCTGTTGATAGGAAATTCAAGGTTTGTACATGTGTC
CATTGAACTCTACTACTCGTTACTATTAATTTTCTATTATTAGTTAAGTT
TCATTATACCTGGCTTCTCTGTATTCACTTCTACTCTTTCTTGCAGTAAA
TCACTGGGAAAATTTTACACTTTAACACTTTTTCACCAAATCCATtaaaa
taccgggtgcgccacaaaaaaagtctctctctttaaaagtaattttctcg
aaatctaaaaattttaaaagaactattcctattttattggaaagaagaaa
aataaacttaaattttgatgggtcatttattgaattcaattcattagatc
aaaagttatgctcacttgaataaaaaagttacttttgaaAAGTgcccaaa
aacgttaaaaatcgacctatcaaattattcagaagcataattacatgata
tcagtatttttgtttcagtcattaaaaatgataattagctatctaaatga
ccttttgttatttaaaggaaggttgaatttcaatgaaaggaagaaaattc
gtcaaaaaaggccaaaaaatctggtagaattcataaaaataNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTAGGACTCccagaaaatattgaaaactatCACAGCCTTCATCCTTT
AGAAGATATCAAAAGCCAAATTTCAGTAAGTTGGGCACTCTAAAGATTTC
TGTCTGCATAGAAGAAATCTAAATACTAATTTCGagcaaaaaatagcaaa
attttcaaataatggGAGCTAATTTCCTTGAAATCATACCTCTAAGTCCC
CAATAATGAGGTTAATGTTAAAGTGAGGTTCCAAAGATAAGTAACAGCTG
GTAAATCTTGTATTTTAGGCATCTCAGTCAACTTATTATTTAAGATtatt
aattaaaattaaaatcgtAAAGAAAATACAGAACACAgaaaatcacaatt
tttttaaaagattcagtttttctcatttttcaggGACAAAGACTCTTTGG
ATATACTTCAACTTGTTATAGAGTTGTCAATTCTAAAGATGGCCTCCATT
ACTGTATGAGAAGGATACATGGTAAGAagatattctattttttttgaaaa
atctcacaAACTAGGGAAAACTTGATGCAATAAAGATTTTCTTTGCATAG
TTTTTTTATCCTCACGCTTTGATCTATTGTATTGTAATGTCTATATTTCG
ATTCCTTTTCAGGTTTTCGCTTATTGAATCCAAAGGCTGTGAGCAGTGTT
GAGAAATGGAAGAAAGTTAGCAATTCAAATATTGTGCCTTTGAAAGAAGC
TTTCTCATCTAAAGCATTTAATGACACATGTGAGTATTTGTAGTACTTCT
TGAAAGTTGCTCTAAATTCAGTAAAATACATATTTTGATTATGAGCACTC
ATAAGATTCTTGgatataaattttaaaagttatctttcatcacaaaataa
aaaagtacactACTCCGAGTTTCATGCTTACTGCACTTGTCAAatgtaca
aataaaatgaatctGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaatccagtcta
gaaccaaaaatctgaggaaaatttcggtaaaactaaatcaaattaatttt
gatgaagattttgaaccctttcgacccttcagtttcaaaattcatgtgTT
AGGTTcatgaaaaatgctcttaatcatgtaattgcgattgccaaatttaa
agtaaaaatttgataggtcgatttttaacgttttcgggcactttctgaaa
gtaacatttttattcaattggacataacttttgatctaatgaatggaatt
taataaatgacccatcaaaatttaagtctatctttcttctttccaatgaa
ataggaatgattcttttaaaatttttagatttcgagaaaattagtttcaa
agagagaaacttttttgtggcgcacccggtattacTAGTAGAGAATTCTC
TAGAAATCTCTTTGTTCTACAGTTTGAAACAAGCATCTTAAAACGTTTTA
AAgttgatgttttttttgtttctaggTTGCGTTTGAATTGTCCTGGCATT
CTGGATGTGCTAACAGATAATGAACCTACCTCACCTGCTATGGTCGTCCA
TTATCAAGTCTGAATACCCTTCATAAGATATAACTTTTATCTCTCATTAT
AAGATTTTACTAACCTCAGTTTTGTTggttatttttctttgtaaagccat
aaaaaatgtttctaatGAAATGACTAACATCTGAacaatataatctgcag
tgaAGACAAATACTTTTGCACATCGATTTTTATCCAAGTTGTAGaccaaa
ttttctttaaagCTCATAAGGTTGATTactttatttttctcttctttacT
TTTTCAGCAAGAGGATTTGGTTGCACTTGGGAAATTGATTCTAGCTTTAG
CATGCTATTCAATGGAATCTGTCCAACGTGAATCGATCCAGGCGTCAATA
GAGTTTGTTGCAAGGAACTATTCTAAAGACCTCAAAACCCTCATATGGTA
TACACTTTTTCCCATCATAGCTAATCTCGTAGAATTTTAGATATAGTAGA
GAAACTGATAATTTTTAGGATGTTATTTATTTTCCTCATCTCAAGGATAG
TTCTTTTTTAGGTGAAATTGTGTAATAGTAGAGGGAAATTTGTTcctttt
tttgaggtcgctcgatttttttagtcaaagcacttgttatacatttttgg
aaagctaaggggtaggggaatcaaaataacttgggtgccaaattaatgaa
aattttagcttgagaaaacgtagacctgttgtatattttggaaagctctc
aaaaaattaagattagagatatattgcaaatataggtgatttctgtacct
aactagagatattaacccttaaaaacagtgtttttcagccagaaacagct
ttTTTGTCCAGTTCTTGCGCTtttggaagctcaatatctcgagttaggta
ctgaaatcacctatactcgcaatatatcactaatcttaattttctgagag
ctttccaaaaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcccaagttattttgattcccctaccccttagctttccaaaaatgt
ataacaagtgctttgactaaaaaaatcgagcgattttacaaatttcccgc
TACTATAATTTTAGGCcttttaaatagatttttaTACGCCATTGCTCTCC
CGGAAAGTGCACTATATTTCCTATGTCTTTATTTTAGGCACTTGTTGAGC
AGCAAAGTGACTTCAAATCAACATTCCATTAATGACGTCATGCCAATGAT
CGGAGCACGCTTTTACAGTCAACTAGACGTCACTCAATCGCGTTCAGATC
TTTTGGAAAACGAGCTGTCTAAGGTTTACTCATTTTTTATCAAAGGAGAC
TTGGTATTTCATTTTGTCATTTATTTCGGATTTTTTTTAGCTTGTATTCT
TTCATGCTTTCtataattttaaataatttatttgtTTAAAGGAGATGGAC
AATGGTCGATTACTGCGGATCCTTGCCAAACTGGGAACAATTATCGAGAG
ATCAGAGTTAGTCTAATTATTTGCTGCTGATttcaattatcaaaatattg
cACTTGAAATTTGTTGACCagttgaaaattatttaaaacgaGCTTTTATT
TGGGGATTTTATAAGTTTTCTGGTCAAGTTGGCAGTCATTCACCACATCT
ACTTTCTTTACCATTGCAGGTTGAATATGGACGCTGAATGGTCAGAGACT
GGAGACCGATATTTACTGAAACTATTTCGAGACTATTTGTTTCATCAAGT
TACTGAATCTGGTGCAGCCTGGATTGATTTTGCACATATTGTGTCCACGC
TTAACAAGGTACGTTTTgcaattgaattttaaatttctaagTCAATTCTT
TATTGGTTCAGAAAATTTTACAGTTTCTTTTggtttcttttaaaatcaag
cAATTTACCGTTTGAAATTTAGTGCTAACGTCATCAAaagagaaaacttt
ttgaagatgAGATAAAAAAGAATGcttgtgaaattttaaaacaacagCTC
AAGCCTCTGAAAAAGAAAACCTCTCAGGGGGTATGTTTTGCCACAGAGTC
ATCGTCAGTTTTCTGAAAGGAAAATTAATGATATGACATTTAGGTAGAAT
AGAATTTCCTCTAGACCATTCCAACCAGTTACTTCTGAATACTGAAATAA
AGATTGATGTGCTTCTATTTTAGCTCGACGCTGGCTCGTCAGATCGTATC
TGCCTCAGTTCTCGAGATGAATTATCTATTCTTGTCGTGTCTTATCATGA
CCTGAAAGCTTGCTTAGAAACCGCGTTTTCAGAGCTCATTCAATCTTCAG
AAATGTCTTAACATTCTAacgaaacaaaatacaaaatggtGGTCCATGGG
TATATTTATGATATATTTGCATTGTGAAAAAATGCGTACAACGATATAAT
TTGAaggagaaaaaaggaaaactgcgtctaatttttttttgattgaacAT
ACACATACAAAAAACTAGCTATGGaagaagttttttattttatttttatt
tttcagtttattGTAAAAtaacaagtcttgtacttttTTGCCcttgtata
tttattttttcatcccGTAACACAAAGAACTTTTTAGGGTACTTTAAAGA
ACGCGAGTACTATTACCTCgtataaaaaagtgaattaatttttgttgcat
tttttCATTGGACGGAGAAAACTATATAATGTGTATATTACGTTCTGTAA
TTTTTATCATGGATTATTTAGTAGCATAtgtacaaaaatacaatttattA
TAGTATGATATTGTATTTGTATTAAGATTTTGATCCGTAAAACTTTATCT
AGcgtacatttttcaaaaagcttttcgGAATCGCACACAGCTCCACGCTA
TTTTCTCGGTTTTTCAATAGCGAAATAATTCacaattaatttcaactttt
ctatTACAGCCCTAAAACTGATAGATTACGGACTTTTTCTCGAATCTGTA
TCTTCATATATTTTGtggaaataattaattttttgggtCTTCTTTTATAT
AGATTATATTACATAgtcgatttttttgaaaaatagtgtATAATGAACCC
TCGCCAAAACGAAAATTGAGATGAAACGTTTACATATTtgtaaaatgtaa
tttttagtACGATCTCATTAATAAGATATtaagaaatacaaaaaataccA
TAAACGGAtaatttaaaaacttaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036991XLOC_036991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058721-exon-scaffold_313-1491911889:509732..510142TCONS_00058721-exon-scaffold_313-1491911889:509732..510142Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:509732..510142TCONS_00058721-exon-scaffold_313-1510915933:509732..510142Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:509732..510142TCONS_00058721-exon-scaffold_313-1575043694:509732..510142Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:511033..511307TCONS_00058721-exon-scaffold_313-1491911889:511033..511307Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:511033..511307TCONS_00058721-exon-scaffold_313-1510915933:511033..511307Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:511033..511307TCONS_00058721-exon-scaffold_313-1575043694:511033..511307Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:511489..511611TCONS_00058721-exon-scaffold_313-1491911889:511489..511611Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:511489..511611TCONS_00058721-exon-scaffold_313-1510915933:511489..511611Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:511489..511611TCONS_00058721-exon-scaffold_313-1575043694:511489..511611Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:511925..511992TCONS_00058721-exon-scaffold_313-1491911889:511925..511992Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:511925..511992TCONS_00058721-exon-scaffold_313-1510915933:511925..511992Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:511925..511992TCONS_00058721-exon-scaffold_313-1575043694:511925..511992Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:512301..512388TCONS_00058721-exon-scaffold_313-1491911889:512301..512388Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:512301..512388TCONS_00058721-exon-scaffold_313-1510915933:512301..512388Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:512301..512388TCONS_00058721-exon-scaffold_313-1575043694:512301..512388Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:512530..512646TCONS_00058721-exon-scaffold_313-1491911889:512530..512646Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:512530..512646TCONS_00058721-exon-scaffold_313-1510915933:512530..512646Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:512530..512646TCONS_00058721-exon-scaffold_313-1575043694:512530..512646Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:512784..513075TCONS_00058721-exon-scaffold_313-1491911889:512784..513075Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:512784..513075TCONS_00058721-exon-scaffold_313-1510915933:512784..513075Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:512784..513075TCONS_00058721-exon-scaffold_313-1575043694:512784..513075Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:518557..518638TCONS_00058721-exon-scaffold_313-1491911889:518557..518638Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:518557..518638TCONS_00058721-exon-scaffold_313-1510915933:518557..518638Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:518557..518638TCONS_00058721-exon-scaffold_313-1575043694:518557..518638Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:518889..519028TCONS_00058721-exon-scaffold_313-1491911889:518889..519028Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:518889..519028TCONS_00058721-exon-scaffold_313-1510915933:518889..519028Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:518889..519028TCONS_00058721-exon-scaffold_313-1575043694:518889..519028Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:519969..520104TCONS_00058721-exon-scaffold_313-1491911889:519969..520104Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:519969..520104TCONS_00058721-exon-scaffold_313-1510915933:519969..520104Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:519969..520104TCONS_00058721-exon-scaffold_313-1575043694:519969..520104Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:520223..520287TCONS_00058721-exon-scaffold_313-1491911889:520223..520287Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:520223..520287TCONS_00058721-exon-scaffold_313-1510915933:520223..520287Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:520223..520287TCONS_00058721-exon-scaffold_313-1575043694:520223..520287Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:520451..520589TCONS_00058721-exon-scaffold_313-1491911889:520451..520589Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:520451..520589TCONS_00058721-exon-scaffold_313-1510915933:520451..520589Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:520451..520589TCONS_00058721-exon-scaffold_313-1575043694:520451..520589Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1491911889:520955..521958TCONS_00058721-exon-scaffold_313-1491911889:520955..521958Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1510915933:520955..521958TCONS_00058721-exon-scaffold_313-1510915933:520955..521958Clytia hemisphaericaexon
TCONS_00058721-exon-scaffold_313-1575043694:520955..521958TCONS_00058721-exon-scaffold_313-1575043694:520955..521958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:509732..521958 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20406	0.672823	1.66439e-08	0.116385	2.99702	2.1037	1.28854	1.0881	1.42539	1.4684	0.531665	0.993015	0.747475	0.827631	0.393889	0.214574	0	0.0990522	1.34407	0.507764	1.74673	3.50537	1.61795	1.07411	1.0891	0.478094	0.736215	0.614436	0.354619	0.96916
Blast
[Close]
BLAST of TCONS_00058721 vs. Swiss-Prot (Human)
Match: PAN3 (PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens GN=PAN3 PE=1 SV=3)

HSP 1 Score: 449.514 bits (1155), Expect = 1.158e-141
Identity = 219/429 (51.05%), Postives = 306/429 (71.33%), Query Frame = 2 
Query:  797 ANENGLPENIENYHSLHPLEDIK--SQISGQRLFGYTSTCYRVVNSKDGLHYCMRRIHGFRLLNPKAVSSVEKWKKVSNSNIVPLKEAFSSKAFNDTSLIFIYQYYPGAETVMARHFKNINTTRSPHSESAFWHXXXXXXXXXXXXXKVTQKVMPERLIWSYVIQLTAAIRQIHSHGLSCRAIDPSKVLLIGNSRLRLNCPGILDVLT-----DNEPTSPAMVVHYQQEDLVALGKLILALACYSMESVQRESIQASIEFVARNYSKDLKTLIWHLLSSKVTSNQHSINDVMPMIGARFYSQLDVTQSRSDLLENELSKEMDNGRLLRILAKLGTIIERSELNMDAEWSETGDRYLLKLFRDYLFHQVTESGAAWIDFAHIVSTLNKLDAGSSDRICLSSRDELSILVVSYHDLKACLETAFSELIQSS 2062
            A+   +P  +++YHSL PLE +   ++I     FGY ++CY+ VNSKD L YC+RRIHGFRL+N K +  V+ WKK+ +SNIV L+E F++KAF + SL+F Y ++ G ET+M+RHF +      P++++ F     +         +    ++PE LIW+Y++QL++A+R IH+ GL+CR +DP+K+L+ G +RLR+NC G+ DVLT     +N P   A++  YQQ DL++LGK++LALAC S+  +QRE++Q ++E V  NYS DLK LI +LL+ +  +   S+ND+MPMIGARFY+QLD  Q R+D++E +L+KE+ NGRL R+LAKLGTI ER E   D  WSETGDRYLLKLFRD+LFHQVTE+GA WID +HI+S LNKLDAG  ++I L SRDE S+LVV+Y DLK C E  F ELI ++
Sbjct:  467 ADMPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFND------PNADAYF--TKRKWGQHEGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVGVFDVLTFDNSQNNNPL--ALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQ--NRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAA 883
The following BLAST results are available for this feature:
BLAST of TCONS_00058721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAN31.158e-14151.05PAN2-PAN3 deadenylation complex subunit PAN3 OS=Ho... [more]
back to top