|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058720 ID=TCONS_00058720|Name=TCONS_00058720|organism=Clytia hemisphaerica|type=transcript|length=2998bpRun BLAST on NCBI transcript from alignment at scaffold_313:509732..521958+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058720 ID=TCONS_00058720|Name=TCONS_00058720|organism=Clytia hemisphaerica|type=transcript|length=12227bp|location=Sequence derived from alignment at scaffold_313:509732..521958+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058720 vs. Swiss-Prot (Human)
Match: PAN3 (PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens GN=PAN3 PE=1 SV=3) HSP 1 Score: 468.003 bits (1203), Expect = 1.364e-148 Identity = 229/469 (48.83%), Postives = 326/469 (69.51%), Query Frame = 3
Query: 735 TLPHLQIPSNKFDQTSFFMSQQMRMELLKQRSVLLSENKDLAGLGLPENIENYHSLHPLEDIK--SQISGQRLFGYTSTCYRVVNSKDGLHYCMRRIHGFRLLNPKAVSSVEKWKKVSNSNIVPLKEAFSSKAFNDTSLIFIYQYYPGAETVMARHFKNINTTRSPHSESAFWHXXXXXXXXXXXXXKVTQKVMPERLIWSYVIQLTAAIRQIHSHGLSCRAIDPSKVLLIGNSRLRLNCPGILDVLT-----DNEPTSPAMVVHYQQEDLVALGKLILALACYSMESVQRESIQASIEFVARNYSKDLKTLIWHLLSSKVTSNQHSINDVMPMIGARFYSQLDVTQSRSDLLENELSKEMDNGRLLRILAKLGTIIERSELNMDAEWSETGDRYLLKLFRDYLFHQVTESGAAWIDFAHIVSTLNKLDAGSSDRICLSSRDELSILVVSYHDLKACLETAFSELIQSS 2120
T PH+ K + SFFM+ ++R EL+ + + +++ +P +++YHSL PLE + ++I FGY ++CY+ VNSKD L YC+RRIHGFRL+N K + V+ WKK+ +SNIV L+E F++KAF + SL+F Y ++ G ET+M+RHF + P++++ F + + ++PE LIW+Y++QL++A+R IH+ GL+CR +DP+K+L+ G +RLR+NC G+ DVLT +N P A++ YQQ DL++LGK++LALAC S+ +QRE++Q ++E V NYS DLK LI +LL+ + + S+ND+MPMIGARFY+QLD Q R+D++E +L+KE+ NGRL R+LAKLGTI ER E D WSETGDRYLLKLFRD+LFHQVTE+GA WID +HI+S LNKLDAG ++I L SRDE S+LVV+Y DLK C E F ELI ++
Sbjct: 427 TAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFND------PNADAYF--TKRKWGQHEGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVGVFDVLTFDNSQNNNPL--ALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQ--NRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAA 883 The following BLAST results are available for this feature:
BLAST of TCONS_00058720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.