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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058709 ID=TCONS_00058709|Name=TCONS_00058709|organism=Clytia hemisphaerica|type=transcript|length=3862bpRun BLAST on NCBI transcript from alignment at scaffold_313:386219..451293+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058709 ID=TCONS_00058709|Name=TCONS_00058709|organism=Clytia hemisphaerica|type=transcript|length=65075bp|location=Sequence derived from alignment at scaffold_313:386219..451293+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058709 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1) HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0 Identity = 371/745 (49.80%), Postives = 501/745 (67.25%), Query Frame = 1
Query: 124 NSNLHPSLLRTVPAYADQARVWADLIRHFKWNKVNLLTSDDYDSRVTYIKFTSWAYKFSIVIERPIMFPAHQKNLTSFLSPLNGTQSKVLLLACSAEDAVTVFRTARALDLTGESYIWITNQQALSSQEGFDLAPQGLLSLRLYDEEKVEGHLRDAFMVTANAIGRLQRTHQLNDPPPNSCDEPSGKWTTGDDLYEALVNTT-VQGSTGTVTFDPYGDRKTPAYELLNVRENKDGTKFNKEVGVLDGNEAVSVDLKDIIWPGNQTDAPTGVFISNHLRIVTVESKPFVYVVERPASGDCSELDGENGRTQKHLPCTGPSSKFPNTRDH----CCKGFCMDLLVKLAEKVNFTYDLHLVEDGNFGSLQRVNGSNIKRWNGLIGEVIEGKADLIVTSLTINNERAQYIEFSKPFKYQGITILVKKNTNKSDLSSFLRPFKPEXXXXXXXXXXXXXXXXYLLDRFSPFGRYRLAQSNKEETALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPKPVVTGVDDPNLRNPSDLFKYATVAKSSVDAYFRRQVELSSMYTFMEKHNVKTEQEGIEKVKNGELKAFIWDSPVLFHETSQNCDVSTVGDLFGRSGYGIGMPKGSPWSNEISLAVLHFHESGAMEELESTWIDFGNCQSDSNSPTTLGLQHMLGVFIMXXXXXXXXXXXXXLEVLYYKHKGWRKQQQKVIKKTTEQWQEHVQERK 2343
+ ++H S LRTVP Y+ Q+ VW +++R + WN + LL SDD++ R + + + E+ + F KN+T+ L +++V++L+ S +DA TV+R A L++TG Y+W+ ++ +S AP G+L L+L + + H+ DA V A A+ L + DPP C + W TG L+++ G TG V F+ GDRK Y ++N++ K +VG+ +G + D K IIWPG +T+ P G +S L+IVT+ +PFVYV + G C E NG K + CTGP+ P + H CC GFC+DLL+KLA +NFTY++HLV DG FG+ +RVN SN K WNG++GE++ G+AD+IV LTINNERAQYIEFSKPFKYQG+TILVKK +S L SF++PF+ LWLLV LSVHVVAV+LYLLDRFSPFGR+++ +EE AL LSSAMWFSWGVLLNSGIGEG PRSFSAR+LGMVWAGFAMIIVASYTANLAAFLVLDRP+ +TG++DP LRNPSD F YATV +SSVD YFRRQVELS+MY MEKHN ++ E I+ V++ +L AFIWDS VL E SQ CD+ T G+LF RSG+GIGM K SPW +SL++L HE+G ME+L+ TW+ + C S SN+P TL ++M GVF++VA GI AGI ++ +E+ Y +HK R++Q ++ W++++Q+RK
Sbjct: 130 DKSIHLSFLRTVPPYSHQSSVWFEMMRVYSWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGN-ALRYAPDGILGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPP-RGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRK-----LVQVGIYNGTHVIPNDRK-IIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRK 866 The following BLAST results are available for this feature:
BLAST of TCONS_00058709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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