TCONS_00058706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058706
Unique NameTCONS_00058706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058706 ID=TCONS_00058706|Name=TCONS_00058706|organism=Clytia hemisphaerica|type=transcript|length=1359bp
aaCTAACCTTATAACGTTAAATCTTCTCCATCTTTTTCAGAGGTTTTAAA
AATCAGTTACTTATCATTTTTCAGATTCCTAACGGAGAAGAAAGGCTCAA
GGACGCCTGTGTCTGGAATACAAACTAACTCGTCAGGAGTAATAACGAAC
ATTCCATCAGGGATGGTGACCGATCAATTCGGTATGATTGGTCTACTCAC
ATTCATACGAGCTGCTGAAACTGAACCAAACCTCGTCACACTTGCACTCG
GAAGTGACCTGACAACACTTGGATTGAATTTGAACTCGACAGAGAGTTTA
TATCACACATTTGGCTCACCCTTCTCTGACTCTACTTGTAAACCTCATGA
AATAGATTTTTATGCGCCACCAGAGTACCTTATAAGTTCATATATCCGTG
ACAAATTAGCACCGATCAAATTAGGACGTTATGGGGAAGActtattattt
tatttgtaTTATACGAATTGTGGAGATATTTTACAACTAGCTGCAGCCGC
TGAACTATATGCACGAGATTGGCGCTATCATAAAGACGAACGTGTATGGA
TTACGCGTTTCCCTGGAATGGACCCTCAAGTAAAGATGAGTACTTATGAA
CGTGGGACATATTATTACTTCGACCCTCAAGGCTGGCGAAAAGTCGCCAA
GGAATTCCACGTAGAGTACGAACGCTTAGAAGAAAAACCCACCGTGCAAG
CACTTCAACAACAAGCGGCCGCCCAGCAGCAACATTAGCTGACCGCCCGC
TCGCTTACGTGATGTAGAAAGATGAGAAGGTTTTGTTCGTTAAAAAAACT
CAAAATGGGGAAATAGTTTCTTTTTTCAAGAGCTAACGACAAAAGCATGA
TGACGTTATTTACCAGAACATCATGGAACAGAGAAACATATTTTTGAACG
TTAACTAAAAGCGAGAATCTTTTGAGAGAATGTGTGTGGGTTTTCTGTTC
AGTCGCAAAACTTCACTGCTCTCCTACCAGCTGTATCTTATAACATCTTT
TGACAGCGCCAACATTGGGTGCAGTACTGAAACAACATTTCTAAGCATGA
AAAAGACATTCTTTATTTTTACTTTGTGTTTTATATAGGAAACCAAAGAA
GATGGTATTTAGTTACAGATCGAATTGTTTTGATCATCAAGAGATAAGAA
ATTTTAATTGTACCTGCACctgtttgtaaaaaaattcaaNATCATCAAGA
GATAAGAAATTTTAATTGTACCTGCACctgtttgtaaaaaaattcaacat
ttgAAGATCATTTTACAAAGACTTACATTTTTTACATACTCTACTTTGTT
CTGAAGTTCACTTCTTCAAATCTGACACTCCTTTCACTTCACTCGCCATA
GAACCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00058706-protein

>TCONS_00058706-protein ID=TCONS_00058706-protein|Name=TCONS_00058706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MVTDQFGMIGLLTFIRAAETEPNLVTLALGSDLTTLGLNLNSTESLYHTF
GSPFSDSTCKPHEIDFYAPPEYLISSYIRDKLAPIKLGRYGEDLLFYLYY
TNCGDILQLAAAAELYARDWRYHKDERVWITRFPGMDPQVKMSTYERGTY
YYFDPQGWRKVAKEFHVEYERLEEKPTVQALQQQAAAQQQH
Run BLAST on NCBI

transcript from alignment at scaffold_313:357265..360031+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058706 ID=TCONS_00058706|Name=TCONS_00058706|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at scaffold_313:357265..360031+ (Clytia hemisphaerica)
aaCTAACCTTATAACGTTAAATCTTCTCCATCTTTTTCAGAGGTTTTAAA
AATCAGTTACTTATCATTTTTCAGATTCCTAACGGAGAAGAAAGGCTCAA
GGACGCCTGTGTCTGGAATACAAACTAACTCGTCAGGTACTTACGTAATT
CGTACGACTTTCTAGTACACAACAGACTTACGTAACTCTAACGTCTATGT
TTCGAGTATCTCCAAAATACGCTCTCTCGTCCCTTCAACACACAAACCCT
CTTAAAAGGGCCCTCCATCACTTGAAGCCTCATTAATTCAAACAGATACA
ATTTCCTTGTTAAGAAGTGTTCAAATTGCCTTCTTTATCACTCAATGTCT
GTAaagaatattttgatatttaataTATTTGACATCTCTGCTTTATTTAG
GAGTAATAACGAACATTCCATCAGGGATGGTGACCGATCAATTCGGTATG
ATTGGTCTACTCACATTCATACGAGCTGCTGAAACTGAACCAAACCTCGT
CACACTTGCACTCGGAAGGTATTTGATTACTACTATTTCTTGTAAACCAC
GTATTTGAACAGAAAAAAAAGAGACTTTTATCAGCAAGTGAACTTTAAAT
GTTTTGAAGGTTGAAGTACGATGCGGTTTCGTATAATTAAGACGAccgat
tttttttcacttatgGAAGTATATTTCACATACCTATTGGCCGTTATTTT
CCGACTTTTTGCCTTTTAATGTAAAactattaaaaaaattagaaagttGA
CAGTTCGAATGTCTAAACTAAAGCTCTTTAGAACTAAGATGATAATAGAT
TGCTAACTTTTTGTCTTGTTTTCTATTCCTAGTGACCTGACAACACTTGG
ATTGAATTTGAACTCGACAGAGTAAGCATTTCTTGTGTTTATAAATACAG
TCTACCTGTGCTCCAGTTGCTTGCTCCAGAGCTAGATCCTACCATACTAC
ATCCATACCCTGTTGTTTTAAAATTAGTCGAATCGATTTTTGAGATTAAC
AGATTCATGACTTGTATTTTGTGTTTCCTGCTTTATAATGGAAATTCCGT
AATCATGCTCACTTCAACATCTTTTTTTCAGGAGTTTATATCACACATTT
GGCTCACCCTTCTCTGACTCTACTTGTAAACCTCATGAAATAGGTAAGTT
TGCAACAAATCCACTGATCAATGAATCAAAAAATGGTACATAGACATTTT
AATGGAAAATATTGACGATTAGATGATCCTGTCTCGATATTTAATCaaga
gattatgtatcggaggatatcagGATATCGAGGGTGACCGTTATTTAAGT
TAAGTTTTTATCGTCGTCGGggaaagtggacggtgattgtggcgacatgt
caactttgctttataccgtctccttcgatCTCTTCACCAATTTTCGACTT
TCTCAAACTGTATTGTAAAACCAACTTTTCTACTTTCAGATTTTTATGCG
CCACCAGAGTACCTTATAAGTTCATATATCCGTGACAAATTAGCACCGAT
CAAATTAGGACGTTATGGGGAAGActtattattttatttgtaTTATACGA
ATTGTGGAGATATTTTACAACTAGCTGCAGCCGCTGAACTGTAAGTTTGT
CTCTCAACACAACAAACAAGTCCATACGCCATAAAATGTTTCCTCGCCAT
TAAAATATTCCTGATGCGTTCCTTGAACCTTACTGCTGCTTTTTGGAATT
TGACTAAAGCTAGTGATTTCTTGTACGCGGAAGTGATTTTTTAGGATGTT
TGTCTTAAGAAACCCCCATTAAGATAGATTCTAACGAGACAATTTTCGAT
TACTTTCTTTGTATTATTGTTTTTCTGACCTTTGATTTATGTTCTTGTAT
TTGTTCGTCAAATGCCGTTCTTTTTAACGGTTTTAGTTTAGTAAAACTTT
TGTTTATCTTTCAGATATGCACGAGATTGGCGCTATCATAAAGACGAACG
TGTATGGATTACGCGTTTCCCTGGAATGGACCCTCAAGTAAAGATGAGTA
CTTATGAACGTGGGACATATTATTACTTCGACCCTCAAGGCTGGCGAAAA
GTCGCCAAGGAATTCCACGTAGAGTACGAACGCTTAGAAGAAAAACCCAC
CGTGCAAGCACTTCAACAACAAGCGGCCGCCCAGCAGCAACATTAGCTGA
CCGCCCGCTCGCTTACGTGATGTAGAAAGATGAGAAGGTTTTGTTCGTTA
AAAAAACTCAAAATGGGGAAATAGTTTCTTTTTTCAAGAGCTAACGACAA
AAGCATGATGACGTTATTTACCAGAACATCATGGAACAGAGAAACATATT
TTTGAACGTTAACTAAAAGCGAGAATCTTTTGAGAGAATGTGTGTGGGTT
TTCTGTTCAGTCGCAAAACTTCACTGCTCTCCTACCAGCTGTATCTTATA
ACATCTTTTGACAGCGCCAACATTGGGTGCAGTACTGAAACAACATTTCT
AAGCATGAAAAAGACATTCTTTATTTTTACTTTGTGTTTTATATAGGAAA
CCAAAGAAGATGGTATTTAGTTACAGATCGAATTGTTTTGATCATCAAGA
GATAAGAAATTTTAATTGTACCTGCACctgtttgtaaaaaaattcaaNAT
CATCAAGAGATAAGAAATTTTAATTGTACCTGCACctgtttgtaaaaaaa
ttcaacatttgAAGATCATTTTACAAAGACTTACATTTTTTACATACTCT
ACTTTGTTCTGAAGTTCACTTCTTCAAATCTGACACTCCTTTCACTTCAC
TCGCCATAGAACCCTGG

Coding sequence (CDS) from alignment at scaffold_313:357265..360031+

>TCONS_00058706 ID=TCONS_00058706|Name=TCONS_00058706|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_313:357265..360031+ (Clytia hemisphaerica)
ATGGTGACCGATCAATTCGGTATGATTGGTCTACTCACATTCATACGAGC
TGCTGAAACTGAACCAAACCTCGTCACACTTGCACTCGGAAGTGACCTGA
CAACACTTGGATTGAATTTGAACTCGACAGAGAGTTTATATCACACATTT
GGCTCACCCTTCTCTGACTCTACTTGTAAACCTCATGAAATAGATTTTTA
TGCGCCACCAGAGTACCTTATAAGTTCATATATCCGTGACAAATTAGCAC
CGATCAAATTAGGACGTTATGGGGAAGActtattattttatttgtaTTAT
ACGAATTGTGGAGATATTTTACAACTAGCTGCAGCCGCTGAACTATATGC
ACGAGATTGGCGCTATCATAAAGACGAACGTGTATGGATTACGCGTTTCC
CTGGAATGGACCCTCAAGTAAAGATGAGTACTTATGAACGTGGGACATAT
TATTACTTCGACCCTCAAGGCTGGCGAAAAGTCGCCAAGGAATTCCACGT
AGAGTACGAACGCTTAGAAGAAAAACCCACCGTGCAAGCACTTCAACAAC
AAGCGGCCGCCCAGCAGCAACATTAGATGGTGACCGATCAATTCGGTATG
ATTGGTCTACTCACATTCATACGAGCTGCTGAAACTGAACCAAACCTCGT
CACACTTGCACTCGGAAGTGACCTGACAACACTTGGATTGAATTTGAACT
CGACAGAGAGTTTATATCACACATTTGGCTCACCCTTCTCTGACTCTACT
TGTAAACCTCATGAAATAGATTTTTATGCGCCACCAGAGTACCTTATAAG
TTCATATATCCGTGACAAATTAGCACCGATCAAATTAGGACGTTATGGGG
AAGActtattattttatttgtaTTATACGAATTGTGGAGATATTTTACAA
CTAGCTGCAGCCGCTGAACTATATGCACGAGATTGGCGCTATCATAAAGA
CGAACGTGTATGGATTACGCGTTTCCCTGGAATGGACCCTCAAGTAAAGA
TGAGTACTTATGAACGTGGGACATATTATTACTTCGACCCTCAAGGCTGG
CGAAAAGTCGCCAAGGAATTCCACGTAGAGTACGAACGCTTAGAAGAAAA
ACCCACCGTGCAAGCACTTCAACAACAAGCGGCCGCCCAGCAGCAACATT
AGATGGTGACCGATCAATTCGGTATGATTGGTCTACTCACATTCATACGA
GCTGCTGAAACTGAACCAAACCTCGTCACACTTGCACTCGGAAGTGACCT
GACAACACTTGGATTGAATTTGAACTCGACAGAGAGTTTATATCACACAT
TTGGCTCACCCTTCTCTGACTCTACTTGTAAACCTCATGAAATAGATTTT
TATGCGCCACCAGAGTACCTTATAAGTTCATATATCCGTGACAAATTAGC
ACCGATCAAATTAGGACGTTATGGGGAAGActtattattttatttgtaTT
ATACGAATTGTGGAGATATTTTACAACTAGCTGCAGCCGCTGAACTATAT
GCACGAGATTGGCGCTATCATAAAGACGAACGTGTATGGATTACGCGTTT
CCCTGGAATGGACCCTCAAGTAAAGATGAGTACTTATGAACGTGGGACAT
ATTATTACTTCGACCCTCAAGGCTGGCGAAAAGTCGCCAAGGAATTCCAC
GTAGAGTACGAACGCTTAGAAGAAAAACCCACCGTGCAAGCACTTCAACA
ACAAGCGGCCGCCCAGCAGCAACATTAGATGGTGACCGATCAATTCGGTA
TGATTGGTCTACTCACATTCATACGAGCTGCTGAAACTGAACCAAACCTC
GTCACACTTGCACTCGGAAGTGACCTGACAACACTTGGATTGAATTTGAA
CTCGACAGAGAGTTTATATCACACATTTGGCTCACCCTTCTCTGACTCTA
CTTGTAAACCTCATGAAATAGATTTTTATGCGCCACCAGAGTACCTTATA
AGTTCATATATCCGTGACAAATTAGCACCGATCAAATTAGGACGTTATGG
GGAAGActtattattttatttgtaTTATACGAATTGTGGAGATATTTTAC
AACTAGCTGCAGCCGCTGAACTATATGCACGAGATTGGCGCTATCATAAA
GACGAACGTGTATGGATTACGCGTTTCCCTGGAATGGACCCTCAAGTAAA
GATGAGTACTTATGAACGTGGGACATATTATTACTTCGACCCTCAAGGCT
GGCGAAAAGTCGCCAAGGAATTCCACGTAGAGTACGAACGCTTAGAAGAA
AAACCCACCGTGCAAGCACTTCAACAACAAGCGGCCGCCCAGCAGCAACA
TTAGATGGTGACCGATCAATTCGGTATGATTGGTCTACTCACATTCATAC
GAGCTGCTGAAACTGAACCAAACCTCGTCACACTTGCACTCGGAAGTGAC
CTGACAACACTTGGATTGAATTTGAACTCGACAGAGAGTTTATATCACAC
ATTTGGCTCACCCTTCTCTGACTCTACTTGTAAACCTCATGAAATAGATT
TTTATGCGCCACCAGAGTACCTTATAAGTTCATATATCCGTGACAAATTA
GCACCGATCAAATTAGGACGTTATGGGGAAGActtattattttatttgta
TTATACGAATTGTGGAGATATTTTACAACTAGCTGCAGCCGCTGAACTAT
ATGCACGAGATTGGCGCTATCATAAAGACGAACGTGTATGGATTACGCGT
TTCCCTGGAATGGACCCTCAAGTAAAGATGAGTACTTATGAACGTGGGAC
ATATTATTACTTCGACCCTCAAGGCTGGCGAAAAGTCGCCAAGGAATTCC
ACGTAGAGTACGAACGCTTAGAAGAAAAACCCACCGTGCAAGCACTTCAA
CAACAAGCGGCCGCCCAGCAGCAACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036985XLOC_036985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058706-exon-scaffold_313-1491911889:357265..357400TCONS_00058706-exon-scaffold_313-1491911889:357265..357400Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:357265..357400TCONS_00058706-exon-scaffold_313-1510915933:357265..357400Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:357265..357400TCONS_00058706-exon-scaffold_313-1575043694:357265..357400Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1491911889:357665..357782TCONS_00058706-exon-scaffold_313-1491911889:357665..357782Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:357665..357782TCONS_00058706-exon-scaffold_313-1510915933:357665..357782Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:357665..357782TCONS_00058706-exon-scaffold_313-1575043694:357665..357782Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1491911889:358097..358135TCONS_00058706-exon-scaffold_313-1491911889:358097..358135Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:358097..358135TCONS_00058706-exon-scaffold_313-1510915933:358097..358135Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:358097..358135TCONS_00058706-exon-scaffold_313-1575043694:358097..358135Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1491911889:358346..358407TCONS_00058706-exon-scaffold_313-1491911889:358346..358407Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:358346..358407TCONS_00058706-exon-scaffold_313-1510915933:358346..358407Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:358346..358407TCONS_00058706-exon-scaffold_313-1575043694:358346..358407Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1491911889:358704..358854TCONS_00058706-exon-scaffold_313-1491911889:358704..358854Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:358704..358854TCONS_00058706-exon-scaffold_313-1510915933:358704..358854Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:358704..358854TCONS_00058706-exon-scaffold_313-1575043694:358704..358854Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1491911889:359179..360031TCONS_00058706-exon-scaffold_313-1491911889:359179..360031Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1510915933:359179..360031TCONS_00058706-exon-scaffold_313-1510915933:359179..360031Clytia hemisphaericaexon
TCONS_00058706-exon-scaffold_313-1575043694:359179..360031TCONS_00058706-exon-scaffold_313-1575043694:359179..360031Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058706-proteinTCONS_00058706-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:357265..360031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.144	113.566	132.944	134.064	132.548	104.495	102.409	111.948	81.7342	89.6807	89.2967	78.2189	88.6561	99.7476	78.2091	77.7883	90.6217	92.429	78.5427	72.6149	79.589	78.3023	114.712	110.052	86.4497	102.636	90.7303	87.5656	80.1044	82.5066
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007282NOT
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00058706 vs. Swiss-Prot (Human)
Match: CNOT2 (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.067e-95
Identity = 139/192 (72.40%), Postives = 161/192 (83.85%), Query Frame = 1 
Query:  115 GIQTNSSGVITNIPSGMVTDQFGMIGLLTFIRAAETEPNLVTLALGSDLTTLGLNLNSTESLYHTFGSPFSDSTCKPHEIDFYAPPEYLISSYIRDKLAPIKLGRYGEDLLFYLYYTNCGDILQLAAAAELYARDWRYHKDERVWITRFPGMDPQVKMSTYERGTYYYFDPQGWRKVAKEFHVEYERLEEKP 690
            GIQ    G +TNIP GMVTDQFGMIGLLTFIRAAET+P +V LALGSDLTTLGLNLNS E+LY  F SP++ S C+P +IDF+ P EYL + +IRDKLA IKLGRYGEDLLFYLYY N GD+LQL AA EL+ RDWRYHK+ERVWITR PGM+P +K +TYERGTYY+FD   WRKVAKEFH+EY++LEE+P
Sbjct:  334 GIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERP 525
The following BLAST results are available for this feature:
BLAST of TCONS_00058706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT21.067e-9572.40CCR4-NOT transcription complex subunit 2 OS=Homo s... [more]
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