|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058701 ID=TCONS_00058701|Name=TCONS_00058701|organism=Clytia hemisphaerica|type=transcript|length=1671bp
TTTTCCTTACGTGACTACATCTCAAGGTAAATTTAGTACTATGCATGAAG
TCACCCTTCAATGGCGTCCAGTAATCAAACAACTCATTAATCTTTAGAAA
GTGTAAATTTAGCCTCATTTTCGTAACTCTACTTTTCAGATATTCGTTGT
TACATCAATGTTACCTTGCATTGCATTATCAAATGCTGTAAAACTGACAG
ATCTGCAAAACATGGAGAATTCGGTAAGAGAAAATGGCTTTGAATCACGC
TAAGCATGCCAGATGGTTTTTCCCGGTTTCACCACTACCACGTCATTTTT
GTCGAAGTTTATCCCGTGACACAAAAGAGGTATGGATGGCAAGCAATTAT
CGTGTATTAAAGTGCCATTATCATTATCCAAAGGTATTAATTATCATATC
CTGTTCACAGTGAAGGGATTATGGAGAGACATCCAGGATAGGAAGGAAGT
GATTTTTAAATTAGTATTCTAGAAATGTATTTATCGATGATGCAAGCTAT
AGTAGAATTAAAATTCTTTGGGTGTAATTCTTTATTCTTTCTCCTGGCAC
ATGATCGGAATGAAGTTGCGACTGACCCGGCAACGCCTTTTCCACTTGCA
CCATGAATTTCATGATGTCAGCAAAAAAATACGGCGAACAAAATCAGGAC
TTAAGAGGTTCTCTGAGGTTTTCCACTCCATataaaaagtgatgaaattt
cgAGCAACTTTGAAACTAGACTTCTCTGGTGACACTGATGACATTGgaaa
acgtaataacgcgaataaattttcataattaaaaCGAAAGTGCATTAATT
AAACAGTTGATGCATTAATTACCGCTTTTTTGAGAGAAGAAAGAACTTTT
GCGTGGGAACGATTAAAGTATAAAGGTGGAGacctttttttctgaaaaac
gaAGAACTTTATTTTTTGTGGACGAATACTTAGACGGCACAAGAGTTCGA
CTTAAGATGGATCTAAAAGACTTTTTACTTGTTTTGATCATCACATCAAC
GTTGTCGTGTTTTCTGTGTAAACCAATCAATCATGTGAAGCACGATATTA
CAGTCGATCTGGATGCTAATTACACCGGTGATGAAAGCAGCACAGATTTT
GTGGAATCCGTTGTCAATATAGCTAATGATACGTTAAGAGGGATCGAAAT
AAGAGCAATCACTTTCTGGCAGAAAGACTATCCGAACATGGAACCAATTT
GTAAGACTGTGGAATGGCGACAATATTTACCAAATAGCAAACCAGTTTAT
TTGTCTCAATGGTCGCTGGTCAATGAAGATGATATCAAGCAATGTAAACC
CATTTACCGAGTTTTCATGTATTTTACTAAACGAGGATCCAAGTTGCTTC
CAAGACTGAGGCGAGTTATCGTGGGTTACTCCGCAATTCGACAGATTTCT
CCTGTTCAAGAAGTGACTTAGtttaaaaacaaccaattgAGAAAAGATGG
TGGTTGAACTTTCACGAAAAAATCACCTGAAGGGGGTTGCGAGCCATCTA
AAGTAACGTTTACTCTAGTCTATTCGTAGCTtagtgataatttttttttc
ttatttacgATGACGGACGGCTAAAGGTCAAAAGTTTAAATAGACAGCAT
TTAAGATGGAAATAATTTTCTCCTACCTCTTATCCCTACACGTAATGTAG
GCTTTTTGTAAACAAGTGTTA Run BLAST on NCBI protein sequence of TCONS_00058701-protein >TCONS_00058701-protein ID=TCONS_00058701-protein|Name=TCONS_00058701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MDLKDFLLVLIITSTLSCFLCKPINHVKHDITVDLDANYTGDESSTDFVE
SVVNIANDTLRGIEIRAITFWQKDYPNMEPICKTVEWRQYLPNSKPVYLS
QWSLVNEDDIKQCKPIYRVFMYFTKRGSKLLPRLRRVIVGYSAIRQISPV
QEVT Run BLAST on NCBI transcript from alignment at scaffold_313:254250..256238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058701 ID=TCONS_00058701|Name=TCONS_00058701|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at scaffold_313:254250..256238+ (Clytia hemisphaerica)
TTTTCCTTACGTGACTACATCTCAAGGTAAATTTAGTACTATGCATGAAG
TCACCCTTCAATGGCGTCCAGTAATCAAACAACTCATTAATCTTTAGAAA
GTGTAAATTTAGCCTCATTTTCGTAACTCTACTTTTCAGATATTCGTTGT
TACATCAATGTTACCTTGCATTGCATTATCAAATGCTGTAAAACTGACAG
ATCTGCAAAACATGGAGAATTCGGTAAGAGAAAATGGCTTTGAATCACGC
TAAGCATGCCAGATGGTTTTTCCCGGTTTCACCACTACCACGTCATTTTT
GTCGAAGTTTATCCCGTGACACAAAAGAGGTATGGATGGCAAGCAATTAT
CGTGTATTAAAGTGCCATTATCATTATCCAAAGGTATTAATTATCATATC
CTGTTCACAGTGAAGGGATTATGGAGAGACATCCAGGATAGGAAGGAAGT
GATTTTTAAATTAGTATTCTAGAAATGTATTTATCGATGATGCAAGCTAT
AGTAGAATTAAAATTCTTTGGGTGTAATTCTTTATTCTTTCTCCTGGCAC
ATGATCGGAATGAAGTTGCGACTGACCCGGCAACGCCTTTTCCACTTGCA
CCATGAATTTCATGATGTCAGCAAAAAAATACGGCGAACAAAATCAGGAC
TTAAGAGGTTCTCTGAGGTTTTCCACTCCATataaaaagtgatgaaattt
cgAGCAACTTTGAAACTAGACTTCTCTGGTGACACTGATGACATTGgaaa
acgtaataacgcgaataaattttcataattaaaaCGAAAGTGCATTAATT
AAACAGTTGATGCATTAATTACCGCTTTTTTGAGAGAAGAAAGAACTTTT
GCGTGGGAACGATTAAAGTATAAAGGTGGAGacctttttttctgaaaaac
gaAGAACTTTATTTTTTGTGGACGAATACTTAGACGGCACAAGAGTTCGA
CTTAAGATGGATCTAAAAGACTTTTTACTTGTTTTGATCATCACATCAAC
GGTAAGATTCTTTCtagaatttcaaacattttaaatatttaattcAATTT
CTAAACATATGGTCTTCAGATTAACtttaaattagattttcgaTTAGAAT
TATCTATATACAGTAAAAACCGCCAGCAGACTTGTTAGAATGTCTGTGGT
TCGATACTTAATGTTGCAAAcaaataatcacttttaattAACTTCATTAA
TGACTGAGCAATTCTGTTTCAACTGAGTTGGATATTATCCGTCGAGAGCA
ATGGAATGTGGCTCAAATTTGTCCGGGTtgtaattttaatgaaattttga
ttcatttctattttttcaGTTGTCGTGTTTTCTGTGTAAACCAATCAATC
ATGTGAAGCACGATATTACAGTCGATCTGGATGCTAATTACACCGGTGAT
GAAAGCAGCACAGATTTTGTGGAATCCGTTGTCAATATAGCTAATGATAC
GTTAAGAGGGATCGAAATAAGAGCAATCACTTTCTGGCAGAAAGACTATC
CGAACATGGAACCAATTTGTAAGACTGTGGAATGGCGACAATATTTACCA
AATAGCAAACCAGTTTATTTGTCTCAATGGTCGCTGGTCAATGAAGATGA
TATCAAGCAATGTAAACCCATTTACCGAGTTTTCATGTATTTTACTAAAC
GAGGATCCAAGTTGCTTCCAAGACTGAGGCGAGTTATCGTGGGTTACTCC
GCAATTCGACAGATTTCTCCTGTTCAAGAAGTGACTTAGtttaaaaacaa
ccaattgAGAAAAGATGGTGGTTGAACTTTCACGAAAAAATCACCTGAAG
GGGGTTGCGAGCCATCTAAAGTAACGTTTACTCTAGTCTATTCGTAGCTt
agtgataatttttttttcttatttacgATGACGGACGGCTAAAGGTCAAA
AGTTTAAATAGACAGCATTTAAGATGGAAATAATTTTCTCCTACCTCTTA
TCCCTACACGTAATGTAGGCTTTTTGTAAACAAGTGTTA Coding sequence (CDS) from alignment at scaffold_313:254250..256238+ >TCONS_00058701 ID=TCONS_00058701|Name=TCONS_00058701|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_313:254250..256238+ (Clytia hemisphaerica)
ATGGATCTAAAAGACTTTTTACTTGTTTTGATCATCACATCAACGTTGTC
GTGTTTTCTGTGTAAACCAATCAATCATGTGAAGCACGATATTACAGTCG
ATCTGGATGCTAATTACACCGGTGATGAAAGCAGCACAGATTTTGTGGAA
TCCGTTGTCAATATAGCTAATGATACGTTAAGAGGGATCGAAATAAGAGC
AATCACTTTCTGGCAGAAAGACTATCCGAACATGGAACCAATTTGTAAGA
CTGTGGAATGGCGACAATATTTACCAAATAGCAAACCAGTTTATTTGTCT
CAATGGTCGCTGGTCAATGAAGATGATATCAAGCAATGTAAACCCATTTA
CCGAGTTTTCATGTATTTTACTAAACGAGGATCCAAGTTGCTTCCAAGAC
TGAGGCGAGTTATCGTGGGTTACTCCGCAATTCGACAGATTTCTCCTGTT
CAAGAAGTGACTTAGATGGATCTAAAAGACTTTTTACTTGTTTTGATCAT
CACATCAACGTTGTCGTGTTTTCTGTGTAAACCAATCAATCATGTGAAGC
ACGATATTACAGTCGATCTGGATGCTAATTACACCGGTGATGAAAGCAGC
ACAGATTTTGTGGAATCCGTTGTCAATATAGCTAATGATACGTTAAGAGG
GATCGAAATAAGAGCAATCACTTTCTGGCAGAAAGACTATCCGAACATGG
AACCAATTTGTAAGACTGTGGAATGGCGACAATATTTACCAAATAGCAAA
CCAGTTTATTTGTCTCAATGGTCGCTGGTCAATGAAGATGATATCAAGCA
ATGTAAACCCATTTACCGAGTTTTCATGTATTTTACTAAACGAGGATCCA
AGTTGCTTCCAAGACTGAGGCGAGTTATCGTGGGTTACTCCGCAATTCGA
CAGATTTCTCCTGTTCAAGAAGTGACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058701-exon-scaffold_313-1491911889:254250..255250 | TCONS_00058701-exon-scaffold_313-1491911889:254250..255250 | Clytia hemisphaerica | exon |
| TCONS_00058701-exon-scaffold_313-1510915933:254250..255250 | TCONS_00058701-exon-scaffold_313-1510915933:254250..255250 | Clytia hemisphaerica | exon |
| TCONS_00058701-exon-scaffold_313-1575043694:254250..255250 | TCONS_00058701-exon-scaffold_313-1575043694:254250..255250 | Clytia hemisphaerica | exon |
| TCONS_00058701-exon-scaffold_313-1491911889:255569..256238 | TCONS_00058701-exon-scaffold_313-1491911889:255569..256238 | Clytia hemisphaerica | exon |
| TCONS_00058701-exon-scaffold_313-1510915933:255569..256238 | TCONS_00058701-exon-scaffold_313-1510915933:255569..256238 | Clytia hemisphaerica | exon |
| TCONS_00058701-exon-scaffold_313-1575043694:255569..256238 | TCONS_00058701-exon-scaffold_313-1575043694:255569..256238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:254250..256238 + |
Blast
The following BLAST results are available for this feature:
|
