TCONS_00058700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058700
Unique NameTCONS_00058700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058700 ID=TCONS_00058700|Name=TCONS_00058700|organism=Clytia hemisphaerica|type=transcript|length=1584bp
GACCTCTTATAGCTTCGCAAGAGAGCGAAAAATAAGAGTAGCTGTCTCAG
GTAGTCGAAAAATCATTTCTGTGGAAGACTCGCACGTGGTGAAACGTGCA
TCTATGCGTATCAACCCAACAACCAACAAGTACTCGTCAAATTTTAAAGA
TGGCAGAAGAGGTCGAGAAAGTTACGAAGCCAGGGATTGTTTACCTCAGT
CGTATCCCACCCTCTATGAATCCACTCAAAGTGAAGAATCTTTTATCACA
ATTTGGAGAAATTAGTAGAACATTCTTGCAGCCAGAAGAGGAGTTTGTGA
GAAAGAGACGTAAGAAGCATGGAGGGAACACTAAGAAGCAATTCACTGAA
GGATGGCTGGAatttaaagacaaaaaaattgcCAGAACCGTCGCTAGAAG
TCTAAATAACACTAAAAtagGAGGAAAGAAAAGATATTATTATCATGATG
ATATTTGGAATATCAAATATCTTCCCAAGTTCCAATGGACACATATCAAG
GAGAAATTGGCGTACGAGAAAGCTGCCCGTGGGCAAAGGATGCGCACAGA
AATATCGCAAGCTAAAAAAGAAGCCAGCTTTTATTTGGAGAACGTTGGCA
AAGGGAAAGCTATGACTGCAATGCAAGAACGACgtgaaaagaagagaaag
aggAAACTCGGAGAGGAAACGGCTTCATCAGAGActcaaaaaaatgaaga
agaagcagaTGTGCCACCTGAAAAGTTGCGcaaaaagttttataaaaagG
AAATGGTTGGCTCGTCCAAAGTTAAAGAACGGGCTAACAAAAGCCAACTC
AGTAGTGCGTTACTGTCAGAGATATTCACAAGTGGATGATTGATTGATAT
TCAACGAATATGGCCATGGAGAGAATTGATACTATGGAGGGTGGTGATGA
TGTTTTGTCATTTGTTGGAGTGACCAAGCAACAATCACATTCAGAATCGT
CTAATGGAATGGGAAAGACTTGAACATTACCTGCTGATATATGAGAGCCA
ATCACCGTTTTCGAAGGAGCGCTTAAAAGCAATGAATATGCATGCTTCAC
ATTATGGCAAACTTATTTTACAATTTACAAAGACAAGAACTGTGGAAAAT
AATTCACCCAAGAATTTCTTAGTTCGATAAACGATGTATTTAAAAAGTTA
TTCATTCAATTTTTTGGAAAATATGAGGTGTTCACTTTAAAAAGCTCTTA
AACAATTTAGTCAGTCTCGACCTCATCTTTTTGGACTCTGATGGTGCTGT
TTGATTCAAGACTAAATGATATGCTATAAACATAAACTCTTCAGTGTTTT
GAATTTTTTATAACATATTACTGGACTCTCATTCTTATTGCACGGTTTAA
CATATTCTCATGTATTCTCACTTGCACACGATGATGATGGTCTAGAAAAA
GGCGATGAGTCTTGACTAGCTGCAAATTTATCATAATTTTTTTGATGTAC
TCGTTCCATGTTGTTACCCGTCATGTTATGCATTGATAAGGAGCCAAGTT
CAATTTTGTTGAGATGCTCTTGAAGTATAATTTAGAACATTGATTGTTTT
ATTTTCTCTCTTGTTTTCTGTTGAAAGAAAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00058700-protein

>TCONS_00058700-protein ID=TCONS_00058700-protein|Name=TCONS_00058700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MAEEVEKVTKPGIVYLSRIPPSMNPLKVKNLLSQFGEISRTFLQPEEEFV
RKRRKKHGGNTKKQFTEGWLEFKDKKIARTVARSLNNTKIGGKKRYYYHD
DIWNIKYLPKFQWTHIKEKLAYEKAARGQRMRTEISQAKKEASFYLENVG
KGKAMTAMQERREKKRKRKLGEETASSETQKNEEEADVPPEKLRKKFYKK
EMVGSSKVKERANKSQLSSALLSEIFTSG
Run BLAST on NCBI

transcript from alignment at scaffold_313:240363..249952+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058700 ID=TCONS_00058700|Name=TCONS_00058700|organism=Clytia hemisphaerica|type=transcript|length=9590bp|location=Sequence derived from alignment at scaffold_313:240363..249952+ (Clytia hemisphaerica)
GACCTCTTATAGCTTCGCAAGAGAGCGAAAAATAAGAGTAGCTGTCTCAG
GTAGTCGAAAAATCATTTCTGTGGAAGACTCGCACGTGGTGAAACGTGCA
TCTATGCGTATCAACCCAACAACCAACAAGTACTCGTCAAATTTTAGTAa
gtattatttttgtttatattctttcttttcTGCTATACTGTTTGCAAGAG
AGCAAATCTACACCTAGCCAGAGTGTCAGGCATGATGTCTAACCTCAGTT
ATGATTAGATATGACAGATCTAACTCATCATGAGTTTGGATGATGAAAAC
GAAGTTTGACTTGTCAAAGAACTGAATTGCAAACAGTTTTAATTCCAGCA
TTGGGGACCATGGAAACGAATTGGAGATAGTGATTGGTCAAAATGTATAG
TGAACAAGGCATTTCCTTGGATTCTGGTACCTGATTGATGTTTAGgatca
ataaaaaaagttgtttaaGATTTTAGGAGCTATTTTATGTTTAATCCTAT
GTATAAGTTTACAGCATTCGAATTTGTATAANTTTATgatcaataaaaaa
agttgtttaaGATTTTAGGAGCTATTTTATGTTTAATCCTATGTATAAGT
TTACAGCATTCGAATTTGTATAATGTATAATGATTTAGTATcaagcagtt
agtcacactagcgtcctgccaaaatgcatatcaaagattaatgctgtgaa
agcgctatattgtttaattgactctcaagcaaaaaaatgcgccgcaaaac
ttctaacgggattcatgaaaaataacctggcgctttttaatgaaattaac
attttcaaaaactttgagaaattgcctaaaatttgagccatagatgaaaa
aatttgagccaagccaacctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
TGTTGCCATGAAGTAGTCAAAATGAAGGACCTGTATTTTGAAATGGACAA
AAACGAATGTGTGACAAAACACCCtgagtttgaaaaatatgtcTTAGACA
AAGGATATCTTTACATGGGGTTGGTCAGTTTACACGACCTTTTCAGTGAC
TATCTGCCGCCACGTGATAAGGCAACAACAAGAAACTACAGGTATGCTGC
CTATAGACATTTCACTTGGTGGGCTCACAGTAAAGGAAGAAAGAACGTTA
GAAGAAGATTGCCAGCTTCTGTTTTGAGAGTCATAAGAGAAAGATTCCCT
GCTCCTGATGGTGTATATACAGGTTTCAAGGAAGGGAAATTTACACCGGA
GAGTAGAATGAAATCATGGAGATTACGAAAAGAAGACGAAGAGCTTGATG
AGTAAAGctagaatatatttttaggacttatacaaaaaaaaattctaaaa
aattaaattgagaatctcaaatttcttcctttgccATTCTCGAAAATTTG
GTGGAACGCTCTACAGTTTCCACCCGTTCAGGTCTTTCAGCAGGTGTGAC
AAAGAGACGTTTCCTCTTCGAAACCGTTTTTCGATCCCCATCAGCAATTG
TTTGATAACATCGGATAGCGATATCTCTTAAAAAATTGTACGACTTGTCC
TTCTTTACTGTCTTGGCCACAAATCTTTTGGAATACTTGTGATAAGCAAT
TTTGAATCTCCCAACCAACTTCCCCTCTTTCAATGTTTGCTTTTGCCCGC
GATCTATGTTGAGGTTGTGATCTAAGACAGCCAGCATCATACCACATTCC
ATTTTATCCTGCTCGAAAAAGACTGACTTGGGTAAATAGCGAATTTTTAA
AGAATGGAATACCTCCAGGTGCGTAGTAAAGACATTGAGGTTCAGCTTTC
GAATATCCTTTTGGAATTCTGCATTGAAAATGATCTTTTTCAACGCTTCA
TGAGAACCAGACCCTTCTGTTAGCCAATCATATGCATCTGGGTTGTCGTG
TGGAGGGCAACTGGTGTAGTGTTGTCCAGGAAACTCGTGTCGATTGACAA
TGTGGTGGATTACACTGTTAAATCGCTCTGCCAGCTCCTCTCcattttta
ttacaattttgaACAGCCCAGTACAAATGATTGACTATCATTGCGGCCCA
TTCAGCCAGCTGCTCCCGtcctgattgaaataaacaCCGTTGACATAAGA
ATATGTCCACTAAGATTTATGAAAGAACACATAGTCGAGTTCTTTAACTT
TCGAATAATTTCATGGttacaaataagaaaaaaggtTTGCTCATCTAGCA
AATGTTATGATCTCAGTGCAATCGTAgcattttgctgaaaaattacTGGC
TCGTCGTTCAATATacatgaaaatcaaaaacaatgaGATCAGAAGATACC
TTTCTTTTTGGAAGCCTTGATTATTTTCTTCGATAAACCTTTAGCCATAT
GCCATGGATCGAATTGTTGAAGTAACCATATGAACTGGGGGTCAGTTGcc
ataaatttttttatctgggTGTTGCGGTCAGTCGAGATTACTTTGAGATC
GGTCAACTCGTCAATAAGCTGCAAGATTGATCTAATAAATCCCTCTTTCT
CCATTccttaaaaatatgaaatatatgaAGTATTTTATAAAAGTTATATG
TGTCCctgcaagcgatttagagcacaTTCAAGATCGGCCAGGATCGGCCA
AGCAATTCTACGGCCCAAATCGGCCTGGTCCGGTTCGGATCGGTCAAGTC
CGGTCTGGATCGTCCTATAACGGCCAGGTCCGGTTTTTGCAAGTTACAAA
cctgataaaacaaaaataatgatgTTCGGCCAATGTAAGATTGGTCTAGG
CCGATATGGACCGGTCCAGGCCGATACGAACCGGTCCAGAATGTTTTACG
GAAGCCGAAATACTAATTAtaagcaaaattgttttcaaacNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGAAAAGA
TTGTTAGAAATCCTCCTTAGAATAGAATTGCACTGCGTCCCTTTGTTAGT
TTATTTAGACATCCCTGTATCATTTACATATCTCCCCTGTTAAAACTTgc
atgtcaatatttttcttcgtaTTTCATACACAGCTAGTAAAGTAGCACCA
AAACCAAAAAGAATACCAATTGTTTCGACCTATTAACTAACAACAGTATA
ATCTCTGAAAAGGAAACAGTTACTTGCCTTTCCTTTGCTGATATTCCAAT
AATACCAGTAATCTATTAGCTCATGAAAAATTATTCTCGTGATGGTTTta
gtgaaaagaaaaaaatgaaaatacttccTTCTTCTTGCTGCTGTTGTGgt
tcttttgcttttgttttgattttagagtcagagacttttcaaaacaattg
gaaaactttttaaataatttgatcaaacaattttcaaaacattcaaatgt
TCATTCGAAcactttacaaaaagattcgaaagtttatAGGCACTCGAGAT
TGTAAACTAAAAACCGTCATACGAAAAAGAGttgcttgtttgttttcaga
TCGGACTTGGCCGAATTAGGCCGATTTGGACCGGTCTAGATCTGCCTTTG
TTataagaaaagatttagaaacatggCTCAGCTAAGATCGGCCTAGATTG
GCCAACATCGGTCAACATCGGCCAAATTCGGCCAGGAACGGTCCAGACCG
GTCCATATCGGCCAAAAGTTCGGCTTTTTAAGGACCGGACCATTTTCAAT
GTGCTCCAAATCGCTTGCAGGGACACATATATTTATTTGGTAGATCAATT
GCATATCTTGTTATCCTGGTGGAAGTATTGattcaaattgttttgaagga
ggCACGTGTCCTTTTCATGATCATATTGAATTTTGTGTTTGTGAATTTTT
GCATTCCTTGACATTTACCACTTTAAAATCCaagattttgttcaaattgA
CATCCATCGAAGTGACAGTGCAGTATGTCGCGTTTAAACCAGGGCTATCG
CACTGTCCATCAACACTGAGTGAAACGGGCTTATTTCGTGCATTGACCTC
CTTAATGACATCTTCGTGATGTTCTTTATATGTTTCACGTATTTCGGGGA
AGAGATGTTTACCTGAAATAAGAATGGTTATCgtacaattttaaaataat
tctgaaCTGAAAGTGATATAAAATCATTATTTCTAGGTCTTAAATATTCG
GTGTATTTAATCAATAAGTAACTTTCTAACCTCTTAAATCGAAGAAGGTA
CTTTTTCCCATCACTTTTAAGTTTAATGCGTGTGCAAATCGTTTAAACTT
GAGGTATGATATACCAGCCAACTCAACAGCCGAAGTAACCATCAGATTTC
CGATACCTGAAATTGAGAATACAATATTGAGAAGGAATAGATTTttgttc
attagatcaaaagttatcctgaaatgggaaaaaatatttttcttagattg
ccatacttaaaaaaattgactatcAATAACCTTACTCTTACTCTCATTTC
AAGTAGGCTCTCGGTTATTTAAAGCCCCAAGggggataagaatttacttc
gaataaccaagagtttgaaaattttgtttcctGCCAGATTTTTGACTTAT
CTATCATAGTTCGTCCCCCCCTTCTTAAGGGGGGAGGGATGACACCTACC
GAAAAATCGAAGAAGGGGGGTcagaaattttgatgaaaaagggGAGAGAT
AGCAAGGAAGGGGgatagtttaagaaggggggcttacatatgTATATATT
GTAGAATATTTTCAAGCAcatgttatgaaatttggtcttcatgaaagcaa
gttttctgttagagtagtctgagtcaaaaagaagaaagaagtttattatt
tcgctttctctaagaTTTCAccatatatttgttagctatttttgtccaaa
atccttgggggataggcatttttaaaggttagggGGGTTACCAAGAAGga
ggggatcagacccctttccgcactatgtcTATAACGGAATGGACTTTACT
GTACTGAAGTATTTGAGGCATTGTGGTTCATAAGCTTAATAATAAGTGCA
GCTCGTGTTATTGAGCAATTTCAGTGCAGTGAATTTTGGTGCATTATAGG
ACCAGCACAGTATAGTCTACTTTAGAGTGTGACACACAACAAACAAGATA
TCGTTAATACttcttaaaattatttttccaatttcctcATTAGAAGATGG
CAGAAGAGGTCGAGAAAGTTACGAAGCCAGGGATTGTTTACCTCAGTCGT
ATCCCACCCTCTATGAATCCACTCAAAGTGAAGAATCTTTTATCACAATT
TGGAGAAATTAGTAGAACATTCTTGCAGCCAGAAGGTATATCTACACTGA
TTTATATTGAACTTTTATAAATTTGCTTTAGATTGTTAAGCACCATATAT
GTTCATCTGATagctttcatttcatttaaaacaatttttggacctacccc
ggaggtcctttaaattaactgatgttcgttcgttcgttcgtccgttcgtt
cgtctgctACCAGcctttctcgggattggctggCTCATTagcattttctt
attatttgcacagtgatgcaaaaaGGTGACGAAAaatgacggagcccaat
tttcaaaaaataattttttaattaattcagCTTCGATACATGAAATAAAG
GAAGCAAGCTTGAAATGCAGTATACATTGCTTAATATTTCTGATTCAGAG
GAGTTTGTGAGAAAGAGACGTAAGAAGCATGGAGGGAACACTAAGAAGCA
ATTCACTGAAGGATGGCTGGAatttaaagacaaaaaaattgcCAGAACCG
TCGCTAGAAGTCTAAATAACACTAAAAtaggtaagtaagtaagtaagtaa
tagtttatttcatgttgacgaaaaggtagcaacaaaggctaataaaagtc
aacgctactttacaaggtaaggaaataaataaataattctaggattttga
atatttcgaaCAAAACTGGAATGAggaaaaaacaatattttgtgCCCAAC
ATTGTTCCAAACAGTATTTCTAGAAGCCTTAATAGTGTATGTTATGGGTA
ATTTGTATTTGCTTTTAGGAGGAAAGAAAAGATATTATTATCATGATGAT
ATTTGGAATATCAAATATCTTCCCAAGTTCCAATGGACACATATCAAGGA
GAAATTGGGTAAGACTGACAGTTGGTCATAATAGCTTTATAGACATTTCC
CTGGCTGCtttcttaaaaaatataattttcaatttttagtcgGGTTTACG
ACTTATTAGTATTTTTCACATCCAAATAAAATCTTACTTCATATCTTAAA
AGGCCGTATCATCACGTAGGATTTTttgattaagagggtcttaATGTGAC
TTTTTTAACATAGAAAAAAAGGTTATGGAATGAAGCTTTATATACGTGCC
ACAAATGTGTTACAATTAACAATATTTCTTTTAGCGTACGAGAAAGCTGC
CCGTGGGCAAAGGATGCGCACAGAAATATCGCAAGCTAAAAAAGAAGCCA
GCTTTTATTTGGAGAACGTTGGCAAAGGGAAAGCTATGACTGCAATGCAA
GAACGACgtgaaaagaagagaaagaggAAACTCGGAGAGGAAACGGTAGG
TTTATCGGACAACCTCTCCGACGAATACCGCCATTCTTTCTTTCTAGTAC
AGTACACTTTTAGTGATTTGCCACTTGCGATTTTGTTCTCGAAACGTTTA
TTATTATTGtgctgttttgatttttgatttcctaGAATGCGAAACAGCTC
GACGTTACAAATCTATTCCCCAAGATTGCGAATTtcaatatatttgaaaa
aagtgaaatcaCTTTCTAGGTCTATACTATTGCAAGTGATCGTTGTCAGA
CACCAAAATATACTATGTAGATTTCGGCGTCGTTTGTTTGTTTTAAGGCT
TCATCAGAGActcaaaaaaatgaagaagaagcagaTGTGCCACCTGAAAA
GTTGCGcaaaaagttttataaaaagGAAATGGTTGGCTCGTCCAAAGTTA
AAGAACGGGCTAACAAAAGCCAACTCAGTAGTGCGTTACTGTCAGAGGTA
ATTCATACAATTCATACTTTCAATTCACATTCAAGTAAAAGTATTCACGA
TTTCTTTTCTACATAGACTAAAATTCAATTCGTGACCCTCGCTTACCTCA
TTAAAATAACTAAATTTGTGGAATAAAAAACTACCTTTAGAACTTTCAAT
GCTAACATCATAATGATGTTTTTGATTAGGCCTCATTCGCCGAAAAAAGA
AgtgaaaaacttaatttattGTGGTTTGTGTTATAGATATTCACAAGTGG
ATGATTGATTGATATTCAACGAATATGGCCATGGAGAGAATTGATACTAT
GGAGGGTGATGATGAAATTAATGTTTTGTCATTTGTTGGAGTGACCAAGC
AACAATNAGGTGGTGATGATGTTTTGTCATTTGTTGGAGTGACCAAGCAA
CAATCACATTCAGGTGAAGGTGGATAGATTAACTTTAGAAGCATTAACTT
TAGAAGCTAGATCTGATTTGCTATAAAGTCATAGATCATGTCCGATGAAA
GTTCGATAAAAAACCATTAGACCACATTTTATTATCACACGTTTATAAGA
CAATAAATGGTACTGGTCTTTTATCTTATTGCATATTATTGCATGATTAG
AATCGTCTAATGGAATGGGAAAGACTTGAACATTACCTGCTGATATATGA
GAGCCAATCACCGTTTTCGAAGGAGCGCTTAAAAGCAATGAATATGCATG
CTTCACATTATGGCAAACTTATTTTACAATTTACAAAGACAAGAACTGTG
GAAAATAATTCACCCAAGAATTTCTTAGTTCGATAAACGATGTATTTAAA
AAGTTATTCATTCAATTTTTTGGAAAATATGAGGTGTTCACTTTAAAAAG
CTCTTAAACAATTTAGTCAGTCTCGACCTCATCTTTTTGGACTCTGATGG
TGCTGTTTGATTCAAGACTAAATGATATGCTATAAACATAAACTCTTCAG
TGTTTTGAATTTTTTATAACATATTACTGGACTCTCATTCTTATTGCACG
GTTTAACATATTCTCATGTATTCTCACTTGCACACGATGATGATGGTCTA
GAAAAAGGCGATGAGTCTTGACTAGCTGCAAATTTATCATAATTTTTTTG
ATGTACTCGTTCCATGTTGTTACCCGTCATGTTATGCATTGATAAGGAGC
CAAGTTCAATTTTGTTGAGATGCTCTTGAAGTATAATTTAGAACATTGAT
TGTTTTATTTTCTCTCTTGTTTTCTGTTGAAAGAAAAAAA

Coding sequence (CDS) from alignment at scaffold_313:240363..249952+

>TCONS_00058700 ID=TCONS_00058700|Name=TCONS_00058700|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_313:240363..249952+ (Clytia hemisphaerica)
ATGGCAGAAGAGGTCGAGAAAGTTACGAAGCCAGGGATTGTTTACCTCAG
TCGTATCCCACCCTCTATGAATCCACTCAAAGTGAAGAATCTTTTATCAC
AATTTGGAGAAATTAGTAGAACATTCTTGCAGCCAGAAGAGGAGTTTGTG
AGAAAGAGACGTAAGAAGCATGGAGGGAACACTAAGAAGCAATTCACTGA
AGGATGGCTGGAatttaaagacaaaaaaattgcCAGAACCGTCGCTAGAA
GTCTAAATAACACTAAAAtagGAGGAAAGAAAAGATATTATTATCATGAT
GATATTTGGAATATCAAATATCTTCCCAAGTTCCAATGGACACATATCAA
GGAGAAATTGGCGTACGAGAAAGCTGCCCGTGGGCAAAGGATGCGCACAG
AAATATCGCAAGCTAAAAAAGAAGCCAGCTTTTATTTGGAGAACGTTGGC
AAAGGGAAAGCTATGACTGCAATGCAAGAACGACgtgaaaagaagagaaa
gaggAAACTCGGAGAGGAAACGGCTTCATCAGAGActcaaaaaaatgaag
aagaagcagaTGTGCCACCTGAAAAGTTGCGcaaaaagttttataaaaag
GAAATGGTTGGCTCGTCCAAAGTTAAAGAACGGGCTAACAAAAGCCAACT
CAGTAGTGCGTTACTGTCAGAGATATTCACAAGTGGATGAATGGCAGAAG
AGGTCGAGAAAGTTACGAAGCCAGGGATTGTTTACCTCAGTCGTATCCCA
CCCTCTATGAATCCACTCAAAGTGAAGAATCTTTTATCACAATTTGGAGA
AATTAGTAGAACATTCTTGCAGCCAGAAGAGGAGTTTGTGAGAAAGAGAC
GTAAGAAGCATGGAGGGAACACTAAGAAGCAATTCACTGAAGGATGGCTG
GAatttaaagacaaaaaaattgcCAGAACCGTCGCTAGAAGTCTAAATAA
CACTAAAAtagGAGGAAAGAAAAGATATTATTATCATGATGATATTTGGA
ATATCAAATATCTTCCCAAGTTCCAATGGACACATATCAAGGAGAAATTG
GCGTACGAGAAAGCTGCCCGTGGGCAAAGGATGCGCACAGAAATATCGCA
AGCTAAAAAAGAAGCCAGCTTTTATTTGGAGAACGTTGGCAAAGGGAAAG
CTATGACTGCAATGCAAGAACGACgtgaaaagaagagaaagaggAAACTC
GGAGAGGAAACGGCTTCATCAGAGActcaaaaaaatgaagaagaagcaga
TGTGCCACCTGAAAAGTTGCGcaaaaagttttataaaaagGAAATGGTTG
GCTCGTCCAAAGTTAAAGAACGGGCTAACAAAAGCCAACTCAGTAGTGCG
TTACTGTCAGAGATATTCACAAGTGGATGAATGGCAGAAGAGGTCGAGAA
AGTTACGAAGCCAGGGATTGTTTACCTCAGTCGTATCCCACCCTCTATGA
ATCCACTCAAAGTGAAGAATCTTTTATCACAATTTGGAGAAATTAGTAGA
ACATTCTTGCAGCCAGAAGAGGAGTTTGTGAGAAAGAGACGTAAGAAGCA
TGGAGGGAACACTAAGAAGCAATTCACTGAAGGATGGCTGGAatttaaag
acaaaaaaattgcCAGAACCGTCGCTAGAAGTCTAAATAACACTAAAAta
gGAGGAAAGAAAAGATATTATTATCATGATGATATTTGGAATATCAAATA
TCTTCCCAAGTTCCAATGGACACATATCAAGGAGAAATTGGCGTACGAGA
AAGCTGCCCGTGGGCAAAGGATGCGCACAGAAATATCGCAAGCTAAAAAA
GAAGCCAGCTTTTATTTGGAGAACGTTGGCAAAGGGAAAGCTATGACTGC
AATGCAAGAACGACgtgaaaagaagagaaagaggAAACTCGGAGAGGAAA
CGGCTTCATCAGAGActcaaaaaaatgaagaagaagcagaTGTGCCACCT
GAAAAGTTGCGcaaaaagttttataaaaagGAAATGGTTGGCTCGTCCAA
AGTTAAAGAACGGGCTAACAAAAGCCAACTCAGTAGTGCGTTACTGTCAG
AGATATTCACAAGTGGATGAATGGCAGAAGAGGTCGAGAAAGTTACGAAG
CCAGGGATTGTTTACCTCAGTCGTATCCCACCCTCTATGAATCCACTCAA
AGTGAAGAATCTTTTATCACAATTTGGAGAAATTAGTAGAACATTCTTGC
AGCCAGAAGAGGAGTTTGTGAGAAAGAGACGTAAGAAGCATGGAGGGAAC
ACTAAGAAGCAATTCACTGAAGGATGGCTGGAatttaaagacaaaaaaat
tgcCAGAACCGTCGCTAGAAGTCTAAATAACACTAAAAtagGAGGAAAGA
AAAGATATTATTATCATGATGATATTTGGAATATCAAATATCTTCCCAAG
TTCCAATGGACACATATCAAGGAGAAATTGGCGTACGAGAAAGCTGCCCG
TGGGCAAAGGATGCGCACAGAAATATCGCAAGCTAAAAAAGAAGCCAGCT
TTTATTTGGAGAACGTTGGCAAAGGGAAAGCTATGACTGCAATGCAAGAA
CGACgtgaaaagaagagaaagaggAAACTCGGAGAGGAAACGGCTTCATC
AGAGActcaaaaaaatgaagaagaagcagaTGTGCCACCTGAAAAGTTGC
GcaaaaagttttataaaaagGAAATGGTTGGCTCGTCCAAAGTTAAAGAA
CGGGCTAACAAAAGCCAACTCAGTAGTGCGTTACTGTCAGAGATATTCAC
AAGTGGATGAATGGCAGAAGAGGTCGAGAAAGTTACGAAGCCAGGGATTG
TTTACCTCAGTCGTATCCCACCCTCTATGAATCCACTCAAAGTGAAGAAT
CTTTTATCACAATTTGGAGAAATTAGTAGAACATTCTTGCAGCCAGAAGA
GGAGTTTGTGAGAAAGAGACGTAAGAAGCATGGAGGGAACACTAAGAAGC
AATTCACTGAAGGATGGCTGGAatttaaagacaaaaaaattgcCAGAACC
GTCGCTAGAAGTCTAAATAACACTAAAAtagGAGGAAAGAAAAGATATTA
TTATCATGATGATATTTGGAATATCAAATATCTTCCCAAGTTCCAATGGA
CACATATCAAGGAGAAATTGGCGTACGAGAAAGCTGCCCGTGGGCAAAGG
ATGCGCACAGAAATATCGCAAGCTAAAAAAGAAGCCAGCTTTTATTTGGA
GAACGTTGGCAAAGGGAAAGCTATGACTGCAATGCAAGAACGACgtgaaa
agaagagaaagaggAAACTCGGAGAGGAAACGGCTTCATCAGAGActcaa
aaaaatgaagaagaagcagaTGTGCCACCTGAAAAGTTGCGcaaaaagtt
ttataaaaagGAAATGGTTGGCTCGTCCAAAGTTAAAGAACGGGCTAACA
AAAGCCAACTCAGTAGTGCGTTACTGTCAGAGATATTCACAAGTGGATGA
ATGGCAGAAGAGGTCGAGAAAGTTACGAAGCCAGGGATTGTTTACCTCAG
TCGTATCCCACCCTCTATGAATCCACTCAAAGTGAAGAATCTTTTATCAC
AATTTGGAGAAATTAGTAGAACATTCTTGCAGCCAGAAGAGGAGTTTGTG
AGAAAGAGACGTAAGAAGCATGGAGGGAACACTAAGAAGCAATTCACTGA
AGGATGGCTGGAatttaaagacaaaaaaattgcCAGAACCGTCGCTAGAA
GTCTAAATAACACTAAAAtagGAGGAAAGAAAAGATATTATTATCATGAT
GATATTTGGAATATCAAATATCTTCCCAAGTTCCAATGGACACATATCAA
GGAGAAATTGGCGTACGAGAAAGCTGCCCGTGGGCAAAGGATGCGCACAG
AAATATCGCAAGCTAAAAAAGAAGCCAGCTTTTATTTGGAGAACGTTGGC
AAAGGGAAAGCTATGACTGCAATGCAAGAACGACgtgaaaagaagagaaa
gaggAAACTCGGAGAGGAAACGGCTTCATCAGAGActcaaaaaaatgaag
aagaagcagaTGTGCCACCTGAAAAGTTGCGcaaaaagttttataaaaag
GAAATGGTTGGCTCGTCCAAAGTTAAAGAACGGGCTAACAAAAGCCAACT
CAGTAGTGCGTTACTGTCAGAGATATTCACAAGTGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036981XLOC_036981Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058700-proteinTCONS_00058700-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058700-exon-scaffold_313-1491911889:240363..240508TCONS_00058700-exon-scaffold_313-1491911889:240363..240508Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:240363..240508TCONS_00058700-exon-scaffold_313-1510915933:240363..240508Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:240363..240508TCONS_00058700-exon-scaffold_313-1575043694:240363..240508Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:246856..246997TCONS_00058700-exon-scaffold_313-1491911889:246856..246997Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:246856..246997TCONS_00058700-exon-scaffold_313-1510915933:246856..246997Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:246856..246997TCONS_00058700-exon-scaffold_313-1575043694:246856..246997Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:247361..247492TCONS_00058700-exon-scaffold_313-1491911889:247361..247492Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:247361..247492TCONS_00058700-exon-scaffold_313-1510915933:247361..247492Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:247361..247492TCONS_00058700-exon-scaffold_313-1575043694:247361..247492Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:247731..247820TCONS_00058700-exon-scaffold_313-1491911889:247731..247820Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:247731..247820TCONS_00058700-exon-scaffold_313-1510915933:247731..247820Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:247731..247820TCONS_00058700-exon-scaffold_313-1575043694:247731..247820Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:248097..248257TCONS_00058700-exon-scaffold_313-1491911889:248097..248257Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:248097..248257TCONS_00058700-exon-scaffold_313-1510915933:248097..248257Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:248097..248257TCONS_00058700-exon-scaffold_313-1575043694:248097..248257Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:248560..248709TCONS_00058700-exon-scaffold_313-1491911889:248560..248709Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:248560..248709TCONS_00058700-exon-scaffold_313-1510915933:248560..248709Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:248560..248709TCONS_00058700-exon-scaffold_313-1575043694:248560..248709Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:248949..249017TCONS_00058700-exon-scaffold_313-1491911889:248949..249017Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:248949..249017TCONS_00058700-exon-scaffold_313-1510915933:248949..249017Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:248949..249017TCONS_00058700-exon-scaffold_313-1575043694:248949..249017Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:249072..249125TCONS_00058700-exon-scaffold_313-1491911889:249072..249125Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:249072..249125TCONS_00058700-exon-scaffold_313-1510915933:249072..249125Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:249072..249125TCONS_00058700-exon-scaffold_313-1575043694:249072..249125Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1491911889:249313..249952TCONS_00058700-exon-scaffold_313-1491911889:249313..249952Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1510915933:249313..249952TCONS_00058700-exon-scaffold_313-1510915933:249313..249952Clytia hemisphaericaexon
TCONS_00058700-exon-scaffold_313-1575043694:249313..249952TCONS_00058700-exon-scaffold_313-1575043694:249313..249952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:240363..249952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.7883	18.8628	11.3134	8.64096	19.4373	15.8086	11.2183	14.6918	7.72028	7.30291	6.23249	4.68302	5.67186	6.06078	5.9765	5.28541	9.5995	6.78236	1.62047	2.69807	6.76255	7.47499	20.3804	17.2074	7.11734	7.76732	2.66483	3.34477	11.5746	16.7303
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR034353ABT1/ESF2_RRM
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00058700 vs. Swiss-Prot (Human)
Match: ABT1 (Activator of basal transcription 1 OS=Homo sapiens GN=ABT1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.847e-44
Identity = 73/153 (47.71%), Postives = 106/153 (69.28%), Query Frame = 3 
Query:  180 PGIVYLSRIPPSMNPLKVKNLLSQFGEISRTFLQPEEEFVRKRRKKHGG------NTKKQFTEGWLEFKDKKIARTVARSLNNTKIGGKKRYYYHDDIWNIKYLPKFQWTHIKEKLAYEKAARGQRMRTEISQAKKEASFYLENVGKGKAMTA 620
            PGIVYL  IPP   PL V+NLLS +GE+ R F Q E+ FVR+++K          +  K +TEGW+EF+DK+IA+ VA SL+NT +G ++R  +  D+WN+KYL +F W+H+ E LA+E+  R QR+R E++QAK+E  FYL++V +G+   A
Sbjct:   45 PGIVYLGHIPPRFRPLHVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLQSVERGQRFLA 197
The following BLAST results are available for this feature:
BLAST of TCONS_00058700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABT14.847e-4447.71Activator of basal transcription 1 OS=Homo sapiens... [more]
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