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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058688 ID=TCONS_00058688|Name=TCONS_00058688|organism=Clytia hemisphaerica|type=transcript|length=4075bpRun BLAST on NCBI protein sequence of TCONS_00058688-protein >TCONS_00058688-protein ID=TCONS_00058688-protein|Name=TCONS_00058688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp KEGFSTTSQNYQNQDSIANVKRTNRSVDKKATTVKRVSTSNKNIRNSTPRRun BLAST on NCBI transcript from alignment at scaffold_313:84079..119169+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058688 ID=TCONS_00058688|Name=TCONS_00058688|organism=Clytia hemisphaerica|type=transcript|length=35091bp|location=Sequence derived from alignment at scaffold_313:84079..119169+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:84079..119169+ >TCONS_00058688 ID=TCONS_00058688|Name=TCONS_00058688|organism=Clytia hemisphaerica|type=CDS|length=56865bp|location=Sequence derived from alignment at scaffold_313:84079..119169+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058688 vs. Swiss-Prot (Human)
Match: APBB2 (Amyloid-beta A4 precursor protein-binding family B member 2 OS=Homo sapiens GN=APBB2 PE=1 SV=3) HSP 1 Score: 243.047 bits (619), Expect = 8.931e-67 Identity = 157/463 (33.91%), Postives = 233/463 (50.32%), Query Frame = 1
Query: 1552 TDYYSRVSTTTDPNNDELPEGWQEVKDDSETYYWHIWTGTIQYERPTALMTPTSSSR-----SVSPFNSEPNSR-----------ATSITDQTENLKISTPSPRPET--------------------PDTMKAKQIIS------FPVHSMGWMDVEEDLMGAQIIGETVNNCITTLANLRHDLHKTEETWANGEDLKLILEGETLKLVHPETKHVYHKQPIAKMRVWGVGREGEEKRDFAYIARDQTTQKHKCHMFRCHGHVSGRSVTNALQAICTRVLEEKKRAK--------ERENSTVKPPSDLMRPPSKLSGSNFNEKVYPDQKKCFTAKYVGSAEVAKPSGMEGLNKVVKMLTEGESTSSWPSVLLEVTTSEIKTI-DCLKQETTMEHRVRFVTFLGVATDERFGAYIVAVAKDMFVCHVYFCAPNAGTLTKAIEEAMKLRFEKML----DSQQIRRP 2775
TD +S S TDP +LP GW+ V D + TYYWHI TGT Q+ERP ++ SR SV+P + N + +D ++L +T +P P PD + I S F V S+GW+++ E+ + VNNCI L+ ++D+ T W G+D+ LILE + L LV P + V H QPI +RVWGVGR+ RDFAY+ARD+ T+ KCH+FRC +++ +L IC++++ E+K AK ER N + P + P K E V QK F +Y+G V KP GM+ LN ++ L + W SV + V + + I + ++E +E RVRF++F+GV D A+I+ F CHV++C PNAG +++A++ A LR++K L SQ++R P
Sbjct: 278 TDIWSDHSFQTDP---DLPPGWKRVSDIAGTYYWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDN--GRDFAYVARDKDTRILKCHVFRC--DTPAKAIATSLHEICSKIMAERKNAKALACSSLQERANVNLDVPLQVDFPTPK------TELV---QK--FHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKEDWLSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQKVRPP 722 The following BLAST results are available for this feature:
BLAST of TCONS_00058688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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