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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058671 ID=TCONS_00058671|Name=TCONS_00058671|organism=Clytia hemisphaerica|type=transcript|length=1885bp
tgaaaagacaaaaaaatcactGCATTTTATCAGTTGGTGACCAGTTTGTT
TTGGCTTATTAAATGTTAAAATATAACAACCACGTCTACGTGAAGGTTTC
AACTTTTTAACGTGATACGCAATGTTCTTACGTACCGTTGCTGCTAACGG
GAATCGCCGTAAATCGCTTGCCAATACTGAAAGCCATGGATCAGGACGTC
GTGGTTCGGCCGCCGCTGAAATGGAACGCCGTAAATCATCTCTCAATAAC
GTCGTCAACACATCACGTTATGATCGTCGCCAGTCAGCCATTGAAGGTCG
ATACCTCCTCAACAGAACTGACACTCAACTCTTCAATATCCCTGAATCAT
TAAGCCCCAGTCTTCAAAACATCCAACGCCGGTCATTATCGGTAGAATCC
GGTAGTCAAACTAAAGACCAAGTATATGATATCCCCGATTGGTCACCTTA
TTCAAGAACATCAAGTTTATCCCGACCAACTTCATACCAGCCTTTAGTAC
GAGTCACATTTCGTCTGCGCGGGCAACAGCCATTTGAAACGTTTGAAAGC
ACTTTGGAACGATTCCCTGATACCTTACTCGGTGACAAACTCAAAAGAGA
GCAATACTTTGACCATAAATTGAATTGTTACATTATAAATCGATGTCAGC
ATTCCTTCAGTGCTGTATTATTCTATTACCAATCTGATGGCATTCTCTCC
AGACCTCTTGATATTGATCGAGAAAATTTCATTAAGGAACTTGAGTTTTA
CGAAATTGAAGAATGTATAGATGCCAGACATAGACAAGAACAGAAAATGG
TTGAAGACAGTAACAGAAGTAAATTATCACCTCAAGGAAAAGCACGTCAA
TTCATATGGAAGATACTGGAATATCAAGAACGCACATTGTTAGCCAAATT
CTGTTTTTATTTCTATCTTATGACTTCGATATTAGCTATCGTCATATTCT
GCGCTGAAACTGAACCACAATTTAAATCTAAAACATTTTGGGATCCACTT
GAAACGGCTGTTAATGTACTTTTCACTATCGAATATATTTTGAGACTATA
CTCAGCTCCGAGTATTAAAGGATTTATATTCTCAGCTTTTGGAGTTGTCG
ATTTGTTCGccattgtaccattttattgcAATGTCTTTATACGCCTTGCC
GGTAACAAAGCTGTAACATCGCTATCGATCTTAACGTTACTACGTGTGTT
ACGCGTCTTCAAATTAACGCGGTGCAATGAAGGTTTACGAATCTTGATGA
TGACGATTTACGAAAGTCTTCATCATTTACGATCGCTTTTCGTCTGCATC
GGTATCACAAGTCTGTTTTTCGCTACTTTACTATTCTTCATCGAATCAGA
TATTCTACAAATATCGGAAACAAATAATTTCGCGAGTATCCCGGATTCTT
TTTGGTATACGGTCATCACCGCAACTGCGGTCGGGTATGGCGATATGTAC
CCGAAAACTTCGTACGGGAAACTTGTTGGTTCTGTTTTAGCGTCGGttgg
tttgttattgttttgtttaCCAACCCCAATGTTGGTCAATAAGTTTGTAG
AATGTTATTACATTCGAATGACGTTAACGAAAGAAATTGACCCACAGCGA
AAGGCAGTCATAAAACGCATGAGAGAGACTTTCATGGAGTGAAGGAAAAA
TCAGTCCCTTGGTTTATAATTTTTGTTGACTTTGATAGCGCTCACAAAAA
CATTCTTAGAGTTGTATTACTATTATTAGCAAACATATAAAAATAGTGTA
ATTTACTCTTGGCTACGAGATCGAAAGTATAAGAAAGAATAAACTTGAGA
AATACTTCAGAAGTCTCAAATTGGCACAACTTCTACTGTACATAACTGTT
CAAACGTGTACATTTTTCATTTGACaatagttcta Run BLAST on NCBI protein sequence of TCONS_00058671-protein >TCONS_00058671-protein ID=TCONS_00058671-protein|Name=TCONS_00058671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MFLRTVAANGNRRKSLANTESHGSGRRGSAAAEMERRKSSLNNVVNTSRY
DRRQSAIEGRYLLNRTDTQLFNIPESLSPSLQNIQRRSLSVESGSQTKDQ
VYDIPDWSPYSRTSSLSRPTSYQPLVRVTFRLRGQQPFETFESTLERFPD
TLLGDKLKREQYFDHKLNCYIINRCQHSFSAVLFYYQSDGILSRPLDIDR
ENFIKELEFYEIEECIDARHRQEQKMVEDSNRSKLSPQGKARQFIWKILE
YQERTLLAKFCFYFYLMTSILAIVIFCAETEPQFKSKTFWDPLETAVNVL
FTIEYILRLYSAPSIKGFIFSAFGVVDLFAIVPFYCNVFIRLAGNKAVTS
LSILTLLRVLRVFKLTRCNEGLRILMMTIYESLHHLRSLFVCIGITSLFF
ATLLFFIESDILQISETNNFASIPDSFWYTVITATAVGYGDMYPKTSYGK
LVGSVLASVGLLLFCLPTPMLVNKFVECYYIRMTLTKEIDPQRKAVIKRM
RETFME Run BLAST on NCBI transcript from alignment at scaffold_312:141384..149599- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058671 ID=TCONS_00058671|Name=TCONS_00058671|organism=Clytia hemisphaerica|type=transcript|length=8216bp|location=Sequence derived from alignment at scaffold_312:141384..149599- (Clytia hemisphaerica)
TGAAAAGACAAAAAAATCACTGCATTTTATCAGTTGGTGACCAGTTTGTT
TTGGCTTATTAAATGTAAGTAAATGAATTCTTACTACTATGGTGCTTAAT
CGCCAAGAATTTAGTTTACGCACGGCAATCGTGGTTGAAAGTTTTTTGGG
ATGGAACGAAAGGTATTTTTTGTTGTGTTTGAACTTTTTGAAATGCTGAC
TCATATTGACCCTGTACTTGTTACTTTACCAAACTTCGTCAATTTTGTTA
AATAATAGTATGTAATGTAAAATTGTTTTTTTTGTAATTTATAGAGCGTT
GACTAGATGGTTCCTGTCAATTATCTTTTCTTGGAAATATTCATTACCAG
ATAACTGGTAAATTACTATTTCACACCCCCTTCTCATTCAGCCACCGGGA
CTCCTTCCCACTGGAAAGATTTCATCCCCTGTTGAAAATTATACCCTATA
TTTTGTCCCCACTGAAAATAAAACAAACAAATCCTCGCAAAATTTTACAT
CCCAACTAAATTTTCTGGCTCAAAAACAATGGAATTCAAAACCCCCTGAC
ATACAAAACATGGGATTATCAATCCCCATTGAGTTTTGGTCTGTTGTTTT
ACCCCCACGGGTTGAAAAAAAAATCCACCGGGTCAATGAAAAGGAGATGT
TATTTAATTTTGATTTCTAAAGTTACAACGAAATTTTTCTTACTCCATTA
CTCTATCATTATCCGAAACTTCTATTTCTGTCAACTTGTTTGTTTGAATA
AAGATAGTCGAGAACCCTGGAAAACAAAACCTAAAACTTTGAAAATGAAC
CAAATGAGATATACTGAGAATATGGAGGACCTAAACTTATTTTAAGAATT
TATACTGCTATCTTAGCAGGGGTAGATATAAGTTTTAGGAAAGATTTTTG
TCTATAATTAATTTCTAACGTCTTAAAAATATAAAGGAGTGCGAAAATTT
GTTTTTTTTCTCCAAGATGGGAAATTTGCCCTCCCTCTTTTAAAATGAAG
TGTTTTTAGAATAGATTGGTGTATAATATGATGGACTATTAAAGTTGTCG
GGAATATTTAAATTAGAAAATGTTATTTCGTATTTCAACATATTTATTTC
TTGCAGGTTAGTGTAGAAAGTATTTTTGTGAAGAAGTATAGAAGAATGTT
ATTTTTTTTGTTCTTTAAAATTTCCACCATATTGAATAATTAGCTTGTAT
CAAACTTAAACGAAAATTTCAGTNCGTTCTTATGTTATTTTTTTGTTCTT
TAAAATTTCCACCATATTGAATAATTAGCTTGTATCAAACTTAAACGAAA
ATTTCAGCAACATAGGGAATCATTTTCAACTTTTCGACGTAGTTTGATAC
AGGCTAAAGACATATGATTGAATAGGAACTGCTAGAGTAACAGCAGATTT
GAAAGTCGAGGTTCAATTGATGGTTAGTTGTTTCAAGTTGATGAAAGTTT
TGATGGTTAACTTCGAAATGACTTTCCTTCCTTTAAAAAACGTATTGTGG
TTTGAAGGATACTGACCTTAAAACTTTTCCTTATTGAGGCTCAATAGACC
AATATCTCATTTTGAGGGATATGAAACAATAATAAAAGAGACACAGATTT
TGTATAGTTCATTTTGGTGAGACTTGTTCGAGCTAGTGGTAATTCTACAT
CCTTCATTCCAACGTGAATTCGAAGTTTAGCCTGAAAACTCGTTTTATAA
ATAAACACCCATGTCTCTTTGCCCGGGTTGANAGTTTAGCCTGAAAACTC
GTTTTATAAATAAACACCCATGTTTCTTTGCCCGGGTTGAAATTTTTCTT
TTAGTCTTTTAGTCACTTGGGAAAGTTTGGAGTGTATTTTTTATAAGGAT
ACGAGGCTCTAAGTAAATTGGGCAAAACCTAATATAGCCTGGGAATCCAT
GCTATAATTTCTTCTTTGATAAACTGATGGCGAAATGTATAGCATGGTAC
GGGCTGAGAGTTTGAATTTCTCAGATTCTAATAACGGTTGAAAACATAGC
CAATCAAATTTTGTTATTCTTTTACTGGTCACACTTTCTTAGAGAAAGCG
CAACTTTCGAAATTTGGTTTTTATTTTAGTAAGTGAGGACAGCGCTAAAT
TCGAATTTCCCACTGTAAAAAATGTGAGTCCAATATTGGACTCACAGCTC
GAAACCGTCTTGTGTACATCAAATTATAAAAAAAACACACGACGGGTCTC
CTGTCTAAACCTAATAACAAACTAAATTCAGTTTTAGTTTCATGTTTCGG
AAATGGCTAGGAATGCTTTTCACCTTAAGTAATTTTAATATTCAATGAAC
AGTTGTTTTTCTTTTCGTAATTTCATTCAGAGTCTTGAGTATTCTTAATT
GGGATCCTTGTTCTAACGCGCATTTCAAAATCACAAATAATTTTCCTTTA
GCCTTCACGACCAGATTAAGGTCACCAATCTTTTTGTATGGAAAATCTTC
AGTGATCAAATATTCCTTATGCTCGGCTTTTGGCTTTTGTTCTTTTGACT
GCCTCTTTTAAATAAATACGAGTACAAAAAATTCGTCGAAATAGGTCACG
TAAAGCTCTTTTTACTTAGACCAACTTTATAATAGTTTTTCATTGCTCAG
GATTGTGAGATATTTTGGTACGTTCTACAGGGAATTTTGAACATTTTGAT
CTAAACAGTCTCAGACAATTCTAGATTATTGCTTATTTTATTGTATTGTC
GAGAGAACTGGCATAGACCAGTACAATAGAAAAAGTAAAGAGGAAAAGTA
GTTGTACACGTTTTTTTATAAAAACATCCAAAAAGCCTTCGGATGTTCCT
AACTTAAGTTTTAAGCATTAAAATGTTTTTAACTTGCTCTCAACAATTTG
GCCATCGAAGCCCTACGTTTTTATATAGTTTGTTCTTATAAAAAACGTGT
AATTATTTAGCACTTATCAGTTTTTGAATCAGAAGATTGGTGAAGAGTAC
ACGCCAGTTTTAATACGCGTTTGTTTTTTATAAGAACCAGTAAATTTTGA
ACCTCAGATTGTTCTTAAATTTCAATTGTTCCGAACTATAGAACTATTGT
TCTGATNAGTACACGCCAGTTTTAATACGCGTTTGTTTTTTATAAGAACC
AGTAAATTTTGAACCTCAGATTGTTCTTAAATTTCAATTGTTCCGAACTA
TAGAGCTATTGTTCTGATATCCAAATCTGAGGCTGGTGTTCTTATAAAAA
TGTTCTTATAAAAAAAAGCGTGTAGAACAATTTTTTAAGAACAGCGTAGC
TCAAAAACGACGAAAAATGAGAACAATTTGTACAAACTTAACGCTTGGAT
GTCTGAACATTAAGACTCGTCTTATCTGAAGCCTAAAATACCGCACTTGA
ATGAAGGAATAGGTTATGAAGAGACATTTACATCACTTTTATATTTTTGC
TGATGAAATTAATACAATCATGTGCGATATATACAGTGAACCAAAGGACT
GGGTTCGAGTTTGAGTTTGAAGTACCAAAAGATTAGAAAAGTAGAAAGTC
GTACTTTTTAAAGGCGTGGAGGTTTTCCCCATCTGGTTAGTGTCTCAAGG
AAACGAAAAGAGAAAAAAAAATTGACAAAAATAACAATCAGGGGTTTAAA
ATAACAAGTCAATGGGTACTGTTCATTTCAGCTCATAAGCCTGTATTATT
ATGAACTTCTTTTTCATTTTTGACATAAAGAAACTTCCTAGTTGACTGAG
CAGAATTCTTCTTAGATACAGCAAAAAGAAAATCAATTTTTAATTTTGCA
CCCTGTGTGCCTTTCTTAACAATATGTTTTTGGGATGTTTCATATTTTAT
AACACAATCTTTCGTCGTTGACACTTTGTTGATACGGTTATTATACGTTG
CTAGGGGACAAAATATCTTATTAACCTGTTCTTCTTTAAAATGACAATAT
TTTGTGATTTTTTTGGTGATGTGATTGTTTTTGGATTTTCTTTTGGAGAA
GACTTTCCTGGAAGTGAATTTTGTTATTTGTTATTGTTTTGTTTTGATGA
ACTCAGTTTCTTTGATACTTCGGATGTTCTTAACTTTTTGAGTTTTAAGC
CTAAAAGTGTTCTTAACATGTTCTTATTTTCACCATAGTTTGAGTTTTTT
TCCATTTTCTTAAGAAATCAGCAAAGCTTTATTAAAATTTTCTTAATTTG
TTCTCAATATTTTGGCATCAAAGCCTTATGTTAAAAATAAAAAATTATAA
AAACGTGTATGTAATTGAGCATCTGCTATAAATTTAGATTCGCATTCCTT
GTAACGCCCTGTCATTCTAATCTCATCAAAATTCTTGCTTAAATCTAAAA
TAATTTTCTGATCTTGAAGGAGAAATCCCTCATTAGCACATAAACCTCCA
CATAGAGACATTTTTCGGTAAATGGTTTTTCCTTCAAGACATCTATTCCC
ACAGGTGACACAACGTTGTTTCAACATTCATCTAATGTTCATAAACGTCC
ATATAATGTTAGATAAACATACAAACTTAACGTTGTGGATCATCTCCGTA
CACGCTTTTTTTTATAAGAATGGTGTTTTTTCATTTCATCATGGATATTC
TAAACTTTTTTGGGAAAATCATCTTAAAATATTCTTAGGGTATTTTCTTA
GGTTAGTGTCCAAATTCAAACAAAATTTAACAAGAAATACACACCTGAAG
CAAAAAATGGCATTTTTGTGAAAATTTTGAGGTTTACTGGAGGAAAACTG
GCAATTTACAGTTAAAATTGCTCTGTAAATGGCATTCTTAGCTTTTGTTG
CCTAATTCCATGATGGTAATATTCTTACGATATTCTTAATTCTTTGGCCA
TTTTCATCATGGACATTCTTATAAAGTGTATTCTTCAAAAAAAAGCGTAT
AGGCAGACAAGGGCTACTCATAACTTTTGGACTTCAAATCGCTGAAAATT
ACTGAAACTCGGTAGTGGTGGATGCACCGGAGGATCGGGAACTCGCTAAA
TTTTGTTAAGATTGGTTGCTCCTCAAATTGGCTATGCCTTTATCTAGTCA
AAATCTTACCGAAATGGGCTTCCTAATTTCTATTTTCCACTACTTTTGTG
GGTCACTATGATAAGAGAATTTTTAAAATATATGGCCAAAGTTGATCTAA
GTAGTCAAAAAATACACAAACTTACTTTCTATAAATTTGTATTTTAAGAG
ATAATATTTCTAAGGGTTTTAGGGCTTAAGAGCTTTTTTAAAAGCCTTGT
TTTTTTAAGCTAAAATGTGAAAATGATGCTATCAATTAATCTTTTTCCCT
TTTCTCCTTGCAATTGACTTTTTCTTAAAGCCCTTTGAAATAAAGCCATT
TATCAAACGGCGAAGGTATTAGACTTGCTTTAAGAGAATTTCTGAAAACT
TTCCTGTTTTTAGTGACACTCTATGACCATAAATTTTTTTTTTCATAAAC
ATCTGGGGTTTTATTTCACTGATTTTCACAATAAGAAAAAAATATATATT
GAAAAAGGGGGGAATTATTTTAAAAAAATCTTTGAAGAATTTTAATCAGC
GTCAAATGAGTAATACTTCATCTATATTTTAAACCATTTAAAAAAGTGAG
AAAATGGCTGAAGTCACATACTAAAACTAAGGTTGAATGTGCCTTAAAAC
CGTAGTAACCTTCGTGGACGGTTCTTAAACGTAAAGTTTTATCAATTCTA
AAAAAAAAGATCGCTTGGTCGGGTCATGAGAGCAAAGACTTTGTTATAAA
TAATCTACAATTTTACATAGCAACTGTAAGAAATCTAGACAACATTTTGT
AGTGCGATAATCAAGGTAGCCTGTATCAGCCTGTATTCTTCGCTGACTGA
AAAGATAACGTGAAGTTCGACCTACGGCAAGGTTTTTTTTCAAAATATAA
AAAACGCCCGTGGCGGCGGGGTGGTACAGGCTATAATCATCAAGGGAACC
ATCTCAATAACGCACTGTGTGAAGCTTTTGTTCTCATAACACATATCATT
ATTCGATGATTTTTAAAAACGGGAAATTTTTGTTTTCATTTCATTTTCAA
TGTTATGTCTACGAAACACTGTTAAACTTCATTGAAATTCTTTATCGTCA
TTTTAAAATGAACTTGGGTTAGCTTGGTAATATTCGAAAGTTTTTTGTGA
ATATTAGTTTAGAATATTTGATTTCAGATTAGTGCGGAATCTGTATTAAA
ATTTGAATTGAATTCACTCTTTTCACAAGTGGTGATTGTAGAAAAAAAAA
AGATTTGTCTTTTTACTTGATTGAAGTCTGTATTTAAAATTTTTTGGAAG
ATTTTACGTCAGATTAAATTTACTGAGGCACTGGTGGGTTGTAGGTGAAG
TTGAACACACTCTTGTGGCAAAATCCTTGTGATCAGTGTTTTAGATCTTA
AGATATTCAAATACTTATTACAGTTTTCCTTATCTATTTTCACAGGTTAA
AATATAACAACCACGTCTACGTGAAGGTTTCAACTTTTTAACGTGATACG
CAATGTTCTTACGTACCGTTGCTGCTAACGGGAATCGCCGTAAATCGCTT
GCCAATACTGAAAGCCATGGATCAGGACGTCGTGGTTCGGCCGCCGCTGA
AATGGAACGCCGTAAATCATCTCTCAATAACGTCGTCAACACATCACGTT
ATGATCGTCGCCAGTCAGCCATTGAAGGTCGATACCTCCTCAACAGAACT
GACACTCAACTCTTCAATATCCCTGAATCATTAAGCCCCAGTCTTCAAAA
CATCCAACGCCGGTCATTATCGGTAGAATCCGGTAGTCAAACTAAAGACC
AAGTATATGATATCCCCGATTGGTCACCTTATTCAAGAACATCAAGTTTA
TCCCGACCAACTTCATACCAGCCTTTAGTACGAGTCACATTTCGTCTGCG
CGGGCAACAGCCATTTGAAACGTTTGAAAGCACTTTGGAACGATTCCCTG
ATACCTTACTCGGTGACAAACTCAAAAGAGAGCAATACTTTGACCATAAA
TTGAATTGTTACATTATAAATCGATGTCAGCATTCCTTCAGTGCTGTATT
ATTCTATTACCAATCTGATGGCATTCTCTCCAGACCTCTTGATATTGATC
GAGAAAATTTCATTAAGGAACTTGAGTTTTACGAAATTGAAGAATGTATA
GATGCCAGACATAGACAAGAACAGAAAATGGTTGAAGACAGTAACAGAAG
TAAATTATCACCTCAAGGAAAAGCACGTCAATTCATATGGAAGATACTGG
AATATCAAGAACGCACATTGTTAGCCAAATTCTGTTTTTATTTCTATCTT
ATGACTTCGATATTAGCTATCGTCATATTCTGCGCTGAAACTGAACCACA
ATTTAAATCTAAAACATTTTGGGATCCACTTGAAACGGCTGTTAATGTAC
TTTTCACTATCGAATATATTTTGAGACTATACTCAGCTCCGAGTATTAAA
GGATTTATATTCTCAGCTTTTGGAGTTGTCGATTTGTTCGCCATTGTACC
ATTTTATTGCAATGTCTTTATACGCCTTGCCGGTAACAAAGCTGTAACAT
CGCTATCGATCTTAACGTTACTACGTGTGTTACGCGTCTTCAAATTAACG
CGGTGCAATGAAGGTTTACGAATCTTGATGATGACGATTTACGAAAGTCT
TCATCATTTACGATCGCTTTTCGTCTGCATCGGTATCACAAGTCTGTTTT
TCGCTACTTTACTATTCTTCATCGAATCAGATATTCTACAAATATCGGAA
ACAAATAATTTCGCGAGTATCCCGGATTCTTTTTGGTATACGGTCATCAC
CGCAACTGCGGTCGGGTATGGCGATATGTACCCGAAAACTTCGTACGGGA
AACTTGTTGGTTCTGTTTTAGCGTCGGTTGGTTTGTTATTGTTTTGTTTA
CCAACCCCAATGTTGGTCAATAAGTTTGTAGAATGTTATTACATTCGAAT
GACGTTAACGAAAGAAATTGACCCACAGCGAAAGGCAGTCATAAAACGCA
TGAGAGAGACTTTCATGGAGTGAAGGAAAAATCAGTCCCTTGGTTTATAA
TTTTTGTTGACTTTGATAGCGCTCACAAAAACATTCTTAGAGTTGTATTA
CTATTATTAGCAAACATATAAAAATAGTGTAATTTACTCTTGGCTACGAG
ATCGAAAGTATAAGAAAGAATAAACTTGAGAAATACTTCAGAAGTCTCAA
ATTGGCACAACTTCTACTGTACATAACTGTTCAAACGTGTACATTTTTCA
TTTGACAATAGTTCTA Coding sequence (CDS) from alignment at scaffold_312:141384..149599- >TCONS_00058671 ID=TCONS_00058671|Name=TCONS_00058671|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_312:141384..149599- (Clytia hemisphaerica)
ATGTTCTTACGTACCGTTGCTGCTAACGGGAATCGCCGTAAATCGCTTGC
CAATACTGAAAGCCATGGATCAGGACGTCGTGGTTCGGCCGCCGCTGAAA
TGGAACGCCGTAAATCATCTCTCAATAACGTCGTCAACACATCACGTTAT
GATCGTCGCCAGTCAGCCATTGAAGGTCGATACCTCCTCAACAGAACTGA
CACTCAACTCTTCAATATCCCTGAATCATTAAGCCCCAGTCTTCAAAACA
TCCAACGCCGGTCATTATCGGTAGAATCCGGTAGTCAAACTAAAGACCAA
GTATATGATATCCCCGATTGGTCACCTTATTCAAGAACATCAAGTTTATC
CCGACCAACTTCATACCAGCCTTTAGTACGAGTCACATTTCGTCTGCGCG
GGCAACAGCCATTTGAAACGTTTGAAAGCACTTTGGAACGATTCCCTGAT
ACCTTACTCGGTGACAAACTCAAAAGAGAGCAATACTTTGACCATAAATT
GAATTGTTACATTATAAATCGATGTCAGCATTCCTTCAGTGCTGTATTAT
TCTATTACCAATCTGATGGCATTCTCTCCAGACCTCTTGATATTGATCGA
GAAAATTTCATTAAGGAACTTGAGTTTTACGAAATTGAAGAATGTATAGA
TGCCAGACATAGACAAGAACAGAAAATGGTTGAAGACAGTAACAGAAGTA
AATTATCACCTCAAGGAAAAGCACGTCAATTCATATGGAAGATACTGGAA
TATCAAGAACGCACATTGTTAGCCAAATTCTGTTTTTATTTCTATCTTAT
GACTTCGATATTAGCTATCGTCATATTCTGCGCTGAAACTGAACCACAAT
TTAAATCTAAAACATTTTGGGATCCACTTGAAACGGCTGTTAATGTACTT
TTCACTATCGAATATATTTTGAGACTATACTCAGCTCCGAGTATTAAAGG
ATTTATATTCTCAGCTTTTGGAGTTGTCGATTTGTTCGCCATTGTACCAT
TTTATTGCAATGTCTTTATACGCCTTGCCGGTAACAAAGCTGTAACATCG
CTATCGATCTTAACGTTACTACGTGTGTTACGCGTCTTCAAATTAACGCG
GTGCAATGAAGGTTTACGAATCTTGATGATGACGATTTACGAAAGTCTTC
ATCATTTACGATCGCTTTTCGTCTGCATCGGTATCACAAGTCTGTTTTTC
GCTACTTTACTATTCTTCATCGAATCAGATATTCTACAAATATCGGAAAC
AAATAATTTCGCGAGTATCCCGGATTCTTTTTGGTATACGGTCATCACCG
CAACTGCGGTCGGGTATGGCGATATGTACCCGAAAACTTCGTACGGGAAA
CTTGTTGGTTCTGTTTTAGCGTCGGTTGGTTTGTTATTGTTTTGTTTACC
AACCCCAATGTTGGTCAATAAGTTTGTAGAATGTTATTACATTCGAATGA
CGTTAACGAAAGAAATTGACCCACAGCGAAAGGCAGTCATAAAACGCATG
AGAGAGACTTTCATGGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058671-exon-scaffold_312-1575043694:149536..149599 | TCONS_00058671-exon-scaffold_312-1575043694:149536..149599 | Clytia hemisphaerica | exon |
| TCONS_00058671-exon-scaffold_312-1575043694:141384..143204 | TCONS_00058671-exon-scaffold_312-1575043694:141384..143204 | Clytia hemisphaerica | exon |
| TCONS_00058671-exon-scaffold_312-1510915933:149536..149599 | TCONS_00058671-exon-scaffold_312-1510915933:149536..149599 | Clytia hemisphaerica | exon |
| TCONS_00058671-exon-scaffold_312-1510915933:141384..143204 | TCONS_00058671-exon-scaffold_312-1510915933:141384..143204 | Clytia hemisphaerica | exon |
| TCONS_00058671-exon-scaffold_312-1491911889:149536..149599 | TCONS_00058671-exon-scaffold_312-1491911889:149536..149599 | Clytia hemisphaerica | exon |
| TCONS_00058671-exon-scaffold_312-1491911889:141384..143204 | TCONS_00058671-exon-scaffold_312-1491911889:141384..143204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_312 | supercontig | scaffold_312:141384..149599 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0051260 | protein homooligomerization |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00058671 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 7.104e-59 Identity = 137/394 (34.77%), Postives = 223/394 (56.60%), Query Frame = 2
Query: 500 RVTFRLRGQQPFETFESTLERFPDTLLGDKLKREQYFDHKLNCYIINRCQHSFSAVLFYYQSDGILSRPLDIDRENFIKELEFYEIEECIDARHRQEQKMVEDSNRSKLSPQGKARQFIWKILEYQERTLLAKFCFYFYLMTSILAIVIFCAETEPQFK--------------------SKTFWDP---LETAVNVLFTIEYILRLYSAPSIKGFIFSAFGVVDLFAIVPFYCNVFIRLA---GNKA---VTSLSIL---TLLRVLRVFKLTRCNEGLRILMMTIYESLHHLRSLFVCIGITSLFFATLLFFIESDILQISETNNFASIPDSFWYTVITATAVGYGDMYPKTSYGKXXXXXXXXXXXXXFCLPTPMLVNKFVECYYIRMTLTKE 1585
RV + G + FET TL +FP+TLLG+ KR +YFD N Y +R + SF A+L+YYQS G L RP+++ + F +E++FYE+ E + R+++ +++ R P+ + ++ +W + EY E + A+ +M +++IVIFC ET P+ K S F DP +ET + F+ E ++R ++ PS F + +D+ AI+P++ + +A GN+ TSL+IL L+RV R+FKL+R ++GL+IL T+ S+ L L + I + F++ ++F E++ ++F+SIPD+FW+ V++ T VGYGDMYP T GK+VGS+ A G+L LP P++V+ F +Y R T +E
Sbjct: 38 RVVINISGLR-FETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPL--PEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAE----EAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNF-NYFYHRETEGEE 423
The following BLAST results are available for this feature:
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