TCONS_00058668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058668
Unique NameTCONS_00058668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058668 ID=TCONS_00058668|Name=TCONS_00058668|organism=Clytia hemisphaerica|type=transcript|length=220bp
GTACCCGTcgctttttctttcaaaaacgtGATGAAGCGAGAAACGTGAAC
CAAGCCAGTCTTTTGGTCGTCACAAGCCAGGAACACATTATTCAACACTG
AAGCAACTTCAGGTTTTAAGCCATTTTCACAAACAAAATCATCCATTTTA
CATCAAACACATACACTGAATCAGAGATCTTTCCATcaaattgacttttt
tttcaaCCTCTCTCACTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_312:25236..25790-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058668 ID=TCONS_00058668|Name=TCONS_00058668|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_312:25236..25790- (Clytia hemisphaerica)
GTACCCGTCGCTTTTTCTTTCAAAAACGTGATGAAGCGAGAAACGTGAAC
CAAGCCAGTCTTTTGGTCGTCACAAGCCAGGAACACATTATTCAACACTG
AAGCAACTTCAGGTTTTAAGCCATTTTCACAAACAAAATCATCCATTTTA
CATCCAACACATACACTAAATCAGAGATATTTCCATCAAATTGACTTTTT
TTCAACCTCTCTCACTAAAGATATTATGTTATATGTGAAATATTTAATGA
AAATTAAAAAGAGCAAAGAATGATATCAAATGACAAAAGGATTGCAATTT
CACACACATTGCATAAAACTGTATGTATGTCGGTAAGGCATATCATACCN
TCTTTCAAAAACGTGATGAAGCGAGAAACGTGAACCAAGCCAGTCTTTTG
ATCATCACAAGCCAGGAACACATTATTCAACACTGAAGCAACTTCAGGTT
TTAAGCCATTTTCACAAACAAAATCATCCATTTTACATCAAACACATACA
CTGAATCAGAGATCTTTCCATCAAATTGACTTTTTTTTCAACCTCTCTCA
CTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036958XLOC_036958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058668-exon-scaffold_312-1575043694:25640..25790TCONS_00058668-exon-scaffold_312-1575043694:25640..25790Clytia hemisphaericaexon
TCONS_00058668-exon-scaffold_312-1575043694:25236..25304TCONS_00058668-exon-scaffold_312-1575043694:25236..25304Clytia hemisphaericaexon
TCONS_00058668-exon-scaffold_312-1510915933:25640..25790TCONS_00058668-exon-scaffold_312-1510915933:25640..25790Clytia hemisphaericaexon
TCONS_00058668-exon-scaffold_312-1510915933:25236..25304TCONS_00058668-exon-scaffold_312-1510915933:25236..25304Clytia hemisphaericaexon
TCONS_00058668-exon-scaffold_312-1491911889:25640..25790TCONS_00058668-exon-scaffold_312-1491911889:25640..25790Clytia hemisphaericaexon
TCONS_00058668-exon-scaffold_312-1491911889:25236..25304TCONS_00058668-exon-scaffold_312-1491911889:25236..25304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:25236..25790 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23713	1.67025	0	1.37041	1.75046	4.72904	0	6.88561	3.12751	2.58262	0	0.949936	0.822776	0	0	1.50774	1.23754	0	0	4.12846	2.8601	8.54418	4.59374	0	11.2839	8.7265	0	0	0	1.39899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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