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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058662 ID=TCONS_00058662|Name=TCONS_00058662|organism=Clytia hemisphaerica|type=transcript|length=261bp
CTTTAACGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAAGGAATA
TGAAATATGTTTGGAATGATGGATCAGAGATGATTTATAAAAATCTTGGT
GGTGGCAGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTCCGTCAT
GTATGGACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGAAAGGTT
CTTGTACAAATTATGGATACCCAATACAATACGTTTGTAAAGGAAAAAAG
CTCAATGATTC Run BLAST on NCBI transcript from alignment at scaffold_312:80381..82644+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058662 ID=TCONS_00058662|Name=TCONS_00058662|organism=Clytia hemisphaerica|type=transcript|length=2264bp|location=Sequence derived from alignment at scaffold_312:80381..82644+ (Clytia hemisphaerica)
CTTTAACGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAAGGAATA
TGAAATATGTTTGGAATGATGGATCAGAGATGATTTATAAAAATCTTGGT
GGTGGCAGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTCCGTCAT
GTATGGACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGAAAGGTT
CTTGTACAAATTATGGATACCCAATACAATACGTTTGTAAAGGAAAAAAG
CTCAATGGTTAGTAACACAATGACctaaactttatattttgtattttttt
catacAGGAATGGAGGGGAGGCtgcaacaatttcaatgaaaatcatTCCA
AAGACATTTTGATATTTAACCCAACTGCCACTCATATTTGCCATAAGGAT
ATGGAACGTTTTAAAAATTACCTAttgacaatatatttttcaccccctgt
gatgttttttctaaaaaagccaatttttcaatttttctcacGATGATTAA
GTGAATAAATAGATCTTACAAGGCTGTcgtgtttgatttttttctgtgtt
gATCTATTTcataatctttttttaaacatttagaTTCGCCTTCCATTACG
ACCGCAGCCACCATGGCGCCTACCCCCGAACCTTTACCATCATTGGTGAC
TTGGGGCTCGAGTAAGTTTTTAATACATAAAACCTGATCATTCAAATTCA
TTGTAAAGCCAATATGGTACCAGGGAAAATTCAATTAATTTGTTAAATGG
TCAGAATGCTTTGGACACATATATCTAAAGAATTTAGCATTTGtacagtt
ttgataaattttaagtCTCACGCTTTCTTAGCAGCTAAGTACATTCAAAT
TTCATTGGAGGTTGTTATGTCTTAAGACTTATTTTACAGCGATTTGCTAG
TCTAGACTCACTTATCTTCAAGCGCcgttttgaatatattttagaTGAAT
ATTACTTCAGTGATGTCAAAGTGAATTGGTTTGAGGCTGAAAGATTATGT
ATTGCTCGTGGAGGAACTCTGGCAACAATCCTATCTCTAGAAGAAGATGA
TTTTATGCTTGACCAACTGACCAAAAGGTTTGTCTTTGCTAAATAccgtt
tttctcaaaaaagcaCCACGgtgtttttttccatttccagATATTAGATG
CGGCGGGTTTAGAGGCTGGCgctgcaatttttttttcgtcagcggacgca
gacctgatttagcggccgaagacctgaattaacggttgaagacctgaatt
accggcaaaagacctgaattaacggtCGAAGACCTAGCACCTATTATCGG
ATGGCTCTCTTTTCAAATAATACTTTCATATACTATTCTTTCTACCATAG
CTTAGTTTCATGGCTGTATTGTATATTACCTTTTCTAGGAAGCCCTTTAA
CGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAAGGAATATGAAAT
ATGTTTGGAATGATGGATCAGAGATGATTTATAAAAATCTTGGTGGTGGC
AGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTCCGTCATGTATGG
ACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGAAAGGTTCTTGTA
CAAATTATGGATACCCAATACAATACGTTTGNGACCGGGTTTTCTTGTTC
CCGAGCCTTACTCTTGGTTGAAAGGTTCTTGTACGAATGATGGATACCCA
ATACAATACGTTTGCAAAGGAAAAAATCTCAATGGTTTGTAATACAGCAA
CCCCAATTTAAAATCcccaatttttattttttattttctatccaTTAATA
TACCCAGTTTTTGGCTTAATTACAGCAGGCTATTTAGCTCATTATTCTCA
CAACTGTGCTAACACAATAAGGCGTTCTGTCGGCCATCCTAGACTAACTA
CCCAACTCCCATGGGTTATCTCGGGCGAAGTTCTATTTACTTGTCAAATA
AACCTCGAAACATATGATCTCCCAAATTAATACTCGGTTCTAGCCATACA
AACTTTTCTGATCAacaactttttttgatctcgtaGCAGCTGCAGCAGGA
AAGTAGAACACCCAGCTTAGTACAAACTGTACTTGATGCCTCTGTGCTTT
ATGCTCATCCAATTAAAGAGCAGAGTCAAGGTTCAGTGGGGGGGATCCAG
GGAAAGAAGTGGCTTTTTCCCCTACATTTGGGTCGACAGCTAGAGGAAAG
GGAGTCTCCGAGTCGCGTTCGACTGCAATTGCAAACTAATTCTGTTTGAG
TTCTCATTAGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058662-exon-scaffold_312-1491911889:80381..80637 | TCONS_00058662-exon-scaffold_312-1491911889:80381..80637 | Clytia hemisphaerica | exon |
| TCONS_00058662-exon-scaffold_312-1510915933:80381..80637 | TCONS_00058662-exon-scaffold_312-1510915933:80381..80637 | Clytia hemisphaerica | exon |
| TCONS_00058662-exon-scaffold_312-1575043694:80381..80637 | TCONS_00058662-exon-scaffold_312-1575043694:80381..80637 | Clytia hemisphaerica | exon |
| TCONS_00058662-exon-scaffold_312-1491911889:82641..82644 | TCONS_00058662-exon-scaffold_312-1491911889:82641..82644 | Clytia hemisphaerica | exon |
| TCONS_00058662-exon-scaffold_312-1510915933:82641..82644 | TCONS_00058662-exon-scaffold_312-1510915933:82641..82644 | Clytia hemisphaerica | exon |
| TCONS_00058662-exon-scaffold_312-1575043694:82641..82644 | TCONS_00058662-exon-scaffold_312-1575043694:82641..82644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_312 | supercontig | scaffold_312:80381..82644 + |
Blast
The following BLAST results are available for this feature:
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