TCONS_00058640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058640
Unique NameTCONS_00058640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058640 ID=TCONS_00058640|Name=TCONS_00058640|organism=Clytia hemisphaerica|type=transcript|length=687bp
TTATGTCTAagccaaagttaaaaaaatctctCTCATACCGACCGAATTTC
GAAAAGTTAGCTCTTTTTTGACGTAACCCTATGAGTTTCGTGGGTGTAAA
AAAGAGACCCTTATGGCTCCCAACACCCATATCAGTCTTTCTAGACTGCT
ttttcaaaagagaaaaaacatCCGAGATCTTAATCCTAATGTATCAATAA
TTGTTGAATACTCTCTAATTTCTTTATCGATAGATTTGCCAGGCCTTAAT
GACGAGGAAGATGAATTAAACGATCCACGACCTTTCCGTGTTCGCTTCCG
TGGCCGCCGTATGATCCGTCGTATCGGCCGTATCCGCATTCGTGTAGATA
AATTGAAATGTCCATTACGCTGTGCCGCTTACTACACATGCCTCGCTAAA
TCGAGTGGAATCGCAAGAATGTTCTGCTACAAACTAAAGAAATCGTGCAA
ATGTTAAAGATGTGggttattttgactttttattttccgACAACTTAGAA
TTTTAGAACTTTCACAActtttgttgaaatatttttatcagttttagttt
gtttttttttcgttttttaatgaACGTAATTTTATTGTCCATTACGCAAT
TTGCTGTAAATCTACCCGAAAAGAATACATTTTACAAACATAAATATAAT
CTTTAATGTTATTATATGGTTAAAAACGATCGagaac
Run BLAST on NCBI

protein sequence of WegIE-2 putative cnidarian restricted protein

>TCONS_00058640-protein ID=TCONS_00058640-protein|Name=WegIE-2 putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MAPNTHISLSRLLFQKRKNIRDLNPNVSIIVEYSLISLSIDLPGLNDEED
ELNDPRPFRVRFRGRRMIRRIGRIRIRVDKLKCPLRCAAYYTCLAKSSGI
ARMFCYKLKKSCKC
Run BLAST on NCBI

transcript from alignment at scaffold_311:1320685..1321371

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058640 ID=TCONS_00058640|Name=TCONS_00058640|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_311:1320685..1321371 (Clytia hemisphaerica)
gttctCGATCGTTTTTAACCATATAATAACATTAAAGATTATATTTATGT
TTGTAAAATGTATTCTTTTCGGGTAGATTTACAGCAAATTGCGTAATGGA
CAATAAAATTACGTtcattaaaaaacgaaaaaaaaacaaactaaaactga
taaaaatatttcaacaaaagTTGTGAAAGTTCTAAAATTCTAAGTTGTcg
gaaaataaaaagtcaaaataaccCACATCTTTAACATTTGCACGATTTCT
TTAGTTTGTAGCAGAACATTCTTGCGATTCCACTCGATTTAGCGAGGCAT
GTGTAGTAAGCGGCACAGCGTAATGGACATTTCAATTTATCTACACGAAT
GCGGATACGGCCGATACGACGGATCATACGGCGGCCACGGAAGCGAACAC
GGAAAGGTCGTGGATCGTTTAATTCATCTTCCTCGTCATTAAGGCCTGGC
AAATCTATCGATAAAGAAATTAGAGAGTATTCAACAATTATTGATACATT
AGGATTAAGATCTCGGatgttttttctcttttgaaaaAGCAGTCTAGAAA
GACTGATATGGGTGTTGGGAGCCATAAGGGTCTCTTTTTTACACCCACGA
AACTCATAGGGTTACGTCAAAAAAGAGCTAACTTTTCGAAATTCGGTCGG
TATGAGagagatttttttaactttggctTAGACATAA

Coding sequence (CDS) from alignment at scaffold_311:1320685..1321371

>TCONS_00058640 ID=TCONS_00058640|Name=TCONS_00058640|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_311:1320685..1321371 (Clytia hemisphaerica)
TTAACATTTGCACGATTTCTTTAGTTTGTAGCAGAACATTCTTGCGATTC
CACTCGATTTAGCGAGGCATGTGTAGTAAGCGGCACAGCGTAATGGACAT
TTCAATTTATCTACACGAATGCGGATACGGCCGATACGACGGATCATACG
GCGGCCACGGAAGCGAACACGGAAAGGTCGTGGATCGTTTAATTCATCTT
CCTCGTCATTAAGGCCTGGCAAATCTATCGATAAAGAAATTAGAGAGTAT
TCAACAATTATTGATACATTAGGATTAAGATCTCGGatgttttttctctt
ttgaaaaAGCAGTCTAGAAAGACTGATATGGGTGTTGGGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036949XLOC_036949Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
WegIE-2 putative cnidarian restricted proteinTCONS_00058640-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058640-exon-scaffold_311-1491911889:1320685..1321371TCONS_00058640-exon-scaffold_311-1491911889:1320685..1321371Clytia hemisphaericaexon
TCONS_00058640-exon-scaffold_311-1510915933:1320685..1321371TCONS_00058640-exon-scaffold_311-1510915933:1320685..1321371Clytia hemisphaericaexon
TCONS_00058640-exon-scaffold_311-1575043694:1320685..1321371TCONS_00058640-exon-scaffold_311-1575043694:1320685..1321371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1320685..1321371 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371106	0.28951	0.588259	0.739954	234.514	220.671	1498.72	1636.33	2174.18	2269.54	1415.34	1093.31	220.995	222.585	939.46	1066.39	592.055	356.473	503.374	417.103	22.3178	24.2568	204.071	232.029	269.346	163.789	35.722	42.1422	855.184	712.33
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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