TCONS_00058616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058616
Unique NameTCONS_00058616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058616 ID=TCONS_00058616|Name=TCONS_00058616|organism=Clytia hemisphaerica|type=transcript|length=510bp
GCGCCAAACTAACAAAAATCATGTAATTGGCTTGCGCAAAGTCCATTTTG
ACTCTTTATTCACCAAATCTTGGGCATATTTCATTTCAGTTCACTCAATT
AAATATTATCATGCATTTTCAATCAAATGGAGTCAGTTTCTGACTATCAA
TTAAGGGTTTTTTTATGTTGTCATGTCGGTCAAGGTGCGAGGTCTGCGCG
ACCGGACCGGGCAACCGGACCGGTTGCTCATACCAGATTTCAACCCTCGC
GAAGCCATACAAGTACACCATTTATTGTAATGTGGACGTCTAATTGATGG
TTCAATGGAATTTTCTGGTTACTCTAATTAATCATATCAGTAGTATATCA
CAAAATAGTTTGAATGTCAAGAGGAGCTGCAGAAATCCTTCCAGAAAATC
ACATAACGACAAATGGTTTTGTACCGGATAGCCAACCTCTTCAGGATATT
AACAACACAAAAGCTTGTCCAAATACATCCAAGAACTCTTCAACAACAAA
TTACAATAAG
Run BLAST on NCBI

transcript from alignment at scaffold_311:713641..714150

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058616 ID=TCONS_00058616|Name=TCONS_00058616|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_311:713641..714150 (Clytia hemisphaerica)
CTTATTGTAATTTGTTGTTGAAGAGTTCTTGGATGTATTTGGACAAGCTT
TTGTGTTGTTAATATCCTGAAGAGGTTGGCTATCCGGTACAAAACCATTT
GTCGTTATGTGATTTTCTGGAAGGATTTCTGCAGCTCCTCTTGACATTCA
AACTATTTTGTGATATACTACTGATATGATTAATTAGAGTAACCAGAAAA
TTCCATTGAACCATCAATTAGACGTCCACATTACAATAAATGGTGTACTT
GTATGGCTTCGCGAGGGTTGAAATCTGGTATGAGCAACCGGTCCGGTTGC
CCGGTCCGGTCGCGCAGACCTCGCACCTTGACCGACATGACAACATAAAA
AAACCCTTAATTGATAGTCAGAAACTGACTCCATTTGATTGAAAATGCAT
GATAATATTTAATTGAGTGAACTGAAATGAAATATGCCCAAGATTTGGTG
AATAAAGAGTCAAAATGGACTTTGCGCAAGCCAATTACATGATTTTTGTT
AGTTTGGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036925XLOC_036925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058616-exon-scaffold_311-1491911889:713641..714150TCONS_00058616-exon-scaffold_311-1491911889:713641..714150Clytia hemisphaericaexon
TCONS_00058616-exon-scaffold_311-1510915933:713641..714150TCONS_00058616-exon-scaffold_311-1510915933:713641..714150Clytia hemisphaericaexon
TCONS_00058616-exon-scaffold_311-1575043694:713641..714150TCONS_00058616-exon-scaffold_311-1575043694:713641..714150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:713641..714150 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131529	0.15527	0.185564	0	6.9507	5.12636	5.94067	8.11619	6.19311	7.50882	4.76407	4.96745	4.62206	2.45235	0.945917	0.604214	1.61986	0.563534	0.578378	0.268868	0.768761	0.467955	0.662398	0.33371	3.93179	4.18681	0.964394	0.22211	0	0.351383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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