TCONS_00058594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058594
Unique NameTCONS_00058594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058594 ID=TCONS_00058594|Name=TCONS_00058594|organism=Clytia hemisphaerica|type=transcript|length=382bp
TTATCTCCGCATATTAAAACTAGTTGTGATACTAAAACTAAGTAGTATAA
AAATTTTACACCTTAAATTTTACCATCTTTTTTTTCTCCATAGCTTCAAA
CTAACATATATTTTATAGCATTTACTATAAAGTgagaatattttcaactt
ttcgacgagctctttattttaattatttgttCTCATAAGATAAAAATCAT
CGCACTCTATCTGCACACATAGCAACAAGCATGCATTCCTTAGCAATATG
TAACCAAGGGCGCACGTGAAGAGAATGCATAGATAGGTCTTATATTGGCA
AAAAAATTATGGCATAGCAAtagggaaaaaataagaatGCATGTCTCATA
CAGACCTACTTTAGGATAAGAAAGAGTtaata
Run BLAST on NCBI

transcript from alignment at scaffold_311:217987..218368

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058594 ID=TCONS_00058594|Name=TCONS_00058594|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at scaffold_311:217987..218368 (Clytia hemisphaerica)
tattaACTCTTTCTTATCCTAAAGTAGGTCTGTATGAGACATGCattctt
attttttccctaTTGCTATGCCATAATTTTTTTGCCAATATAAGACCTAT
CTATGCATTCTCTTCACGTGCGCCCTTGGTTACATATTGCTAAGGAATGC
ATGCTTGTTGCTATGTGTGCAGATAGAGTGCGATGATTTTTATCTTATGA
GaacaaataattaaaataaagagctcgtcgaaaagttgaaaatattctcA
CTTTATAGTAAATGCTATAAAATATATGTTAGTTTGAAGCTATGGAGAAA
AAAAAGATGGTAAAATTTAAGGTGTAAAATTTTTATACTACTTAGTTTTA
GTATCACAACTAGTTTTAATATGCGGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036903XLOC_036903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058594-exon-scaffold_311-1491911889:217987..218368TCONS_00058594-exon-scaffold_311-1491911889:217987..218368Clytia hemisphaericaexon
TCONS_00058594-exon-scaffold_311-1510915933:217987..218368TCONS_00058594-exon-scaffold_311-1510915933:217987..218368Clytia hemisphaericaexon
TCONS_00058594-exon-scaffold_311-1575043694:217987..218368TCONS_00058594-exon-scaffold_311-1575043694:217987..218368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:217987..218368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.199979	0	0	2.76553	1.74829	3.16385	1.48098	0.345623	2.99677	0	0.409734	1.77304	1.55804	0.931581	0.374898	0	0.315584	0.217998	1.1406	0.793107	0.580275	0.940534	1.28262	1.32107	2.55455	4.21795	2.40081	1.59331	1.62333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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