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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058576 ID=TCONS_00058576|Name=TCONS_00058576|organism=Clytia hemisphaerica|type=transcript|length=961bp
CTAGCTTTTCAAGTTGATCATTGATAGAGTtacttgaaacatttttcttc
agtttttccCTCAAATATGAGATCAGTAATTTTACTAGATTCTTAACAGC
TCCAGCTGATGCCCCAGCATTCTCAcaaaatatatgcaaatcaTCCAAAA
GTTTGGATGCGTCTTTCGGATTTAACAGAAAATCAAATACAAGTTGAATA
AATTCATTAAACGACTCCTCTGGAAACCTATTTAAAATTTGAACCTCTGC
AGAACTTATTGATGAAGTTGATACCTCTGTCATGTTTGCTAAAAAACATT
CAACGTTAAATACTTTGCTGCCTTTTTTCGTGTCAGTGTGGTGCTTCCTT
CTTCCAGTTTTTTTCCCTGAACAGGAGTGAAATATCGAAAGTAGTGCCCA
ATGCCCTTAAAATACACGGCTCTGATTAGTCAAAAATGAGCTAATCTATT
GGTCCACAAGGTCCGTaaatgaaatcgaaagtgacattggaaaacaaaat
ggtACTGGACTGGAAAGCTTAACCACATTTAAGAAAAGATGgtGGTTGAA
ACAGTAAAAGAACTTGACTTAGAAAAATACCTAGGGAGATGGCACGAGGT
AAGCActcattttcaaaggttttcCATTATTATCCTCGCCAGTTACGGTA
TAATTCTAACTGTCTTCTTAATTTCCGAATGGATTCTTAAATTTGAATGT
TGATGGAGATGTAGCCTacactagacgtcacccgcgcttttttctacttt
ttcgaatgtttttttaacctgataacagctgttcataattttcttacgcg
cacggtaaacctctaaagtggggggcgtacgatctTACGGTACTCGGGAT
AAGGCCTAATTTAGGGCCGGGAAgcggtaaaaacgataaaaagtgttCGG
GAAACGGTATTTTGCAAGAGTCACGGTGACGGTAAAACACCTGTTTTTCG
TCCGGGATGgg Run BLAST on NCBI transcript from alignment at scaffold_311:1252722..1255709- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058576 ID=TCONS_00058576|Name=TCONS_00058576|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at scaffold_311:1252722..1255709- (Clytia hemisphaerica)
CTAGCTTTTCAAGTTGATCATTGATAGAGTTACTTGAAACATTTTTCTTC
AGTTTTTCCCTCAAATATGAGATCAGTAATTTTACTAGATTCTTAACAGC
TCCAGCTGATGCCCCAGCATTCTCACAAAATATATGCAAATCATCCAAAA
GTTTGGATGCGTCTTTCGGATTTAACAGAAAATCAAATACAAGTTGAATA
AATTCATTAAACGACTCCTCTGGAAACCTATTTAAAATTTGAACCTCTGC
AGAACTTATTGATGAAGTTGATACCTCTGTCATGTTTGCTAAAAAACATT
CAACGTTAAATACTTTGCTGCCTTTTTTCGTGTCAGTGTGGTGCTTCCTT
CTTCCAGTTTTTTTCCCTGAACAGGAGTGAAATATCGAAAGTAGTGCCCA
ATGCCCTTAAAATACACGGCTCTGATTAGTCAAAAATGAGCTAATCTATT
GGTCCACAAGGTCCGTAAATGAAATCGAAAGTGACATTGGAAAACAAAAT
GGTGATTCAATTTCTTTCTTTTTTTTTCTGCTGCTAAAGTCCTGCTAATT
GATATAAATTGTAGTGAATTAATCAGTTATATTTTCAGTTTAGCTACCGG
GTGACCCACGAAAAAGTATAAGAGTTTGGAGGGTAACTGTGTCCGAAAAA
ATTGAATTTTACATAAATTCTTTTTTCGTGGTAAAGAGGAAAGACACGTG
GAAAGACAAAAAATTTTGATGTATCATTTTTTAATTTTGGAAAAGTAGTT
ATCAAGATATGGAAGTTTAAAGTCAAAAGTCATTATAAAAACAGTCAAAA
AACGTCAAAAAGACGGTATCAAATTTGTATAAAAACAAACATCTTTCCTT
TGATCATTTGCTATTTCTTTGTCTTTTCGTTAAGAAAAAAAGGGCTAGGG
CTCGTCGCTGTTAATGATAGGGGTCGTACTTTTCCAAATGAATAAATATG
ATTAAAAAAGAATTGTCAACCTTTGTTATCCTTCCGGTAAAAGAATTTAA
AATATCTGAATATGCTTCTCACTCGATGTCTCTTTTTATTTGTTAATTGG
CAATTGGTAATTACTGTAATTAATTTGATACTGTTTTTTTTTAATGTTTT
TTGACCGTTTTTTATAATGACTTTTGACTTTATACCTCCATATCTCGATA
ACTACTTTTCAAAAATTTAAAAATGATACATTAAAATTTAAGTTTGTCTT
TCCTCTTTACCACAAAAAGAGAATTTAGTTAAAATTCAATTTTTTTCAGA
CACAGTTACCTTCCAAACTCTTATACTTTTTCGTGGGTCACCCGGTATAT
GTTAAAATCCTTTTAACATGTACGTTTTATCCAGACTTTTTTTCTGTATA
AGTTCTCCATTTGCCATTCACTGCACCATATAATATTTATCTTTCTTAAC
GTGCTCCATATATAAAATGAAAAATACACCCCATCATAGCATAGGCTGCT
GCTCAATAACTTTTTCAAATTGGTGACTAACAACCAATGGGATTTGATAA
CGATTGATTGTTTCGATAATCGATAGGTAATCAACAATTCATCTATTGGT
TATCCATTGGGCATTGTTTGGAAAAAGTTATCGGCCGTGTTAATTTAAAA
GTGTGAGAGTCTGGATTTTTTACCTTTCAAAAACAAAGAGCAAAAGGTGC
CTCTAAATCACGAAAAACTGAATTTTTTTTTCTTTAATTTGTGGAAGAGC
CAAATTTTATATTTTTAGGTACTGGACTGGAAAGCTTAACCACATTTAAG
AAAAGATGGTAAGTTTCCAAATATTCTAAACTGATTTGATATGAGTAACC
TAAAAATACTATATTTATAATTTTGTTGAAATTGGCTCTTTCAGAAAATT
TTGGTGGGGTGGAGGATCTCTTGATACTGTCTGGGGATCAATTTAAAATA
TACAAAGGTTGCCTTGTCCACTTGCTCTCTTTGGGGTAGTTTTTAATTTA
TAGGGGTCAACTGATGCTTATTCTGGGTTTACATGATTCCGACTGGGGTT
CTAGGTCCCCCCCCCGCCAAATTTAGGTCCCCCCTGAGAACAAGGTCCCC
CCAGCCTGATAAGATTTTAGGTCCCAGTATAGGGGAAAAATTTTATGGCA
TTCACAAAGCTCTATTTACATGTGTGTGCACTTTTAGAGAATGCAATAGA
ATGTCTTCATTTTTGCATTTTAAGGATCAGATCACACTTTGCATGAAAAC
ATAAAGGTTTAGATAAATTAAAAACCAACAGTAAAGAAGAATATTTGGGA
AGTGTTATTTAGCCCCCAGAGTTACATAAACTAATGCAGGTAGGCCCGTC
TGTCGGGCCTGTCGGGAAAAACAAGCAGCTCCCACCTCTTATATGGCAAA
TTTTAGGTGTGGGGTGCGAGCCATGGTTTAGATCTGCTGTCAGAGGAGGA
GGGTTTAAATTTCCAAAAAATGTTATATCTTCCACCACCACCATATTCAA
ATTCTTTCTGGCATATTAACCAGATAGGTACCCAATATTAACATTTTAAT
TTTTATGAATAAATTTTAAAGTCACCAGGTGAGTTGAATTATTTTATTTT
AATTGTTTTGTTTTTAAGGTGGTTGAAACAGTAAAAGAACTTGACTTAGA
AAAATACCTAGGGAGATGGCACGAGGTAAGCACTCATTTTCAAAGGTTTT
CCATTATTATCCTCGCCAGTTACGGTATAATTCTAACTGTCTTCTTAATT
TCCGAATGGATTCTTAAATTTGAATGTTGATGGAGATGTAGCCTACACTA
GACGTCACCCGCGCTTTTTTCTACTTTTTCGAATGTTTTTTTAACCTGAT
AACAGCTGTTCATAATTTTCTTACGCGCACGGTAAACCTCTAAAGTGGGG
GGCGTACGATCTTACGGTACTCGGGATAAGGCCTAATTTAGGGCCGGGAA
GCGGTAAAAACGATAAAAAGTGTTCGGGAAACGGTATTTTGCAAGAGTCA
CGGTGACGGTAAAACACCTGTTTTTCGTCCGGGATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058576-exon-scaffold_311-1575043694:1255209..1255709 | TCONS_00058576-exon-scaffold_311-1575043694:1255209..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1575043694:1253952..1253991 | TCONS_00058576-exon-scaffold_311-1575043694:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1575043694:1252722..1253141 | TCONS_00058576-exon-scaffold_311-1575043694:1252722..1253141 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1510915933:1255209..1255709 | TCONS_00058576-exon-scaffold_311-1510915933:1255209..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1510915933:1253952..1253991 | TCONS_00058576-exon-scaffold_311-1510915933:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1510915933:1252722..1253141 | TCONS_00058576-exon-scaffold_311-1510915933:1252722..1253141 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1491911889:1255209..1255709 | TCONS_00058576-exon-scaffold_311-1491911889:1255209..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1491911889:1253952..1253991 | TCONS_00058576-exon-scaffold_311-1491911889:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058576-exon-scaffold_311-1491911889:1252722..1253141 | TCONS_00058576-exon-scaffold_311-1491911889:1252722..1253141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1252722..1255709 - |
Blast
The following BLAST results are available for this feature:
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