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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058570 ID=TCONS_00058570|Name=TCONS_00058570|organism=Clytia hemisphaerica|type=transcript|length=1036bp
gaaaatttcaaacatctTCAGATTGTTTACTCTTTTGATTGTTCAACACA
CGGGTTGTTTTCCTGAGAGAAATCACTTTTAATACCGAAAATGTCTTTGC
CTCGTCGAAGCAAAGATACTATTTTAACTGGTTCGACAACATTACCAGAG
CTTGCCAACATCAATACAAATCAATCTAACAACAGCATCACCTCAACCAA
TATGGCTGCTCTCAGCAATACAACACATTTAGAAAACAAACAATCGAATG
CATCATCAGGTTTTGACGAAGATGATAATACCAGCATTGAGAGCAAATCT
GGTGTCTTACCTCCAATCGATTCGAATACCAAAGTTTTAGGCCCACGAAA
ATCAATCGAACTTTCTCGCCAAGAGAAAAGCTTAGAATTGTGTTCTCCAA
AACCTAAAACTGCTATTGGTTGTAATCGAATCACTTCCGTTGATAAAAAA
CCATGTGATATTGACAAACCGAAACCTAATTCATTACCCCCGATCACTTC
GACAGATGGTATTCCAGGCTTCATTGATATTAAGCTGCAAAAAAGTATTG
TTATAAAGAACGCTGATAAACACGGCAACAAGCGTAGCCCAAGAAAACGT
GCTAAAACACATGTCATCTACAAAGAACTGAACCGCGGTGATTCTTGGGA
ATTATTGAAAGCTGAGAAGATTCGATGTGTAGAATTAAGTAAATACGAAG
AAAAACTAGAAGCcgagcgacaacaaaagaacgTGAAGAAATAtaagaag
aaaaataatgaaaagaaGAATAGCAGTAAGAAATTATCAAGTGATAAGAA
ACGTAGCAGCGTGAAAAGCCTTCTGACTGATGATGATGAGGAGGTGCTTG
GTAAAGGTGCTTCAAAGGACCATAAAGAAATTAAGATTAGCAAAAAGAAA
AGTAGCAGGCCTGTTGGGAGGagAAACAAGAATCGTAAAACAATACAATC
GGAAGAGAGTGATGACTAACTTACAATCttttaaatttaagaaattttaa
atgtatacttaaaaaatttcaacaaaatagaacgaa Run BLAST on NCBI transcript from alignment at scaffold_311:1099128..1101553- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058570 ID=TCONS_00058570|Name=TCONS_00058570|organism=Clytia hemisphaerica|type=transcript|length=2426bp|location=Sequence derived from alignment at scaffold_311:1099128..1101553- (Clytia hemisphaerica)
GAAAATTTCAAACATCTTCAGATTGTTTACTCTTTTGATTGTTCAACACA
CGGGTTGTTTTCCTGAGAGAAATCACTTTTAATACCGAAAATGTCTTTGC
CTCGTCGAAGCAAAGATACTATTTTAACTGGTTCGACAACATTACCAGAG
CTTGCCAACATCAATACAAATCAATCTAACAACAGCATCACCTCAACCAA
TATGGCTGCTCTCAGCAATACAACACATTTAGAAAACAAACAATCGAATG
CATCATCAGGTTTTGACGAAGATGATAATACCAGCATTGAGAGCAAGTAA
GTTTTGAGGAATCACTCAAATTTGTCTAAATAATTTCTACTGGTTAATAT
TTAAGAGAATTGTTTATTTTCTTCTCGCTATTTTATTTTAAAAACCCGTT
ATTTTTTGACCATTTTCGTCGACTTTCCCTGAGTTAGATGTTGTGCTTGT
TTGAATCTTATTCAGGGATAGTGCCAGGGCTCAACACTCTCTTGCGAGGA
AATAGGTATTTTTTTAAAACACTATCTTTGAGAGTTGAATGGAAATAAAC
CTTAGTATTAATTATAACTGCAATATGCAGTATGCGTTGTGATCCTCATA
GTTAGCTATAAAGCATATGCCTCTTTCTGGGTAGGTTTAGTCTCTTCTAT
AACTGCAATATTGTATTTCGCTTTCAGATCTGGTGTCTTACCTCCAATCG
ATTCGAATACCAAAGTTTTAGGCCCACGAAAATCAATCGAACTTTCTCGC
CAAGAGAAAAGCTTAGAATTGTGTTCTCCAAAACCTAAAACTGCTATTGG
TTGTAATCGAATCACTTCCGTTGATAAAAAACCATGTGATATTGACAAAC
CGAAACCTAATTCATTACCCCCGATCACTTCGACAGATGGTATTCCAGGC
TTCATTGATATTAAGCTGCAAAAAAGTATTGTTATAAAGAACGCTGATAA
ACACGGCAACAAGCGTAGCCCAAGAAAACGTGCTAAAACACATGTCATCT
ACAAAGAACTGAACCGCGGTGATTCTTGGGAATTATTGAAAGCTGAGAAG
ATTCGATGTGTAGAATTAAGTAAATACGAAGAAAAACTAGAAGCCGAGCG
ACAACAAAAGAACGTGAAGAAATATAAGAAGAAAAATAATGAAAAGAAGA
ATAGCAGTAAGAAATTATCAAGTGATAAGAAACGTAGCAGCGTGAAAAGC
CTTCTGACTGATGATGATGAGGAGGTGCTTGGTAAAGGTGCTTCAAAGGA
CCATAAAGAAATTAAGATTAGCAAAAAGAAAAGTAGCAGGCCTGTTGGGA
GGGTGAGTATTATCCATTGAGTTTCAAGCACAAAGGACTAGAGGAGAGAC
TCCTGGATGGGAAATAAAACCACTTATTTCCCATCCAGAACGCCAGCGCG
TAGCCTTTACACCAGCGCGTAGCCTTTACACAAACGCCGGATTGAAACTA
AAATCTATCGCTAGATTTATTCAAAAAAATGTAGTCCTCCAAAACAAAGG
AACCGCTAGATACAATCCGTCGTCGTGATTACGGCGCGTTCTATGCGCGT
TTTTGATGGAAAATAAGTGGCTTCAATTTCTCTTGCCTGAGAAGGGTTGA
AGTTTCGCCTATAGCCCTTCGGGATTGAAATTCAATGGTTTTATCTACCT
TTTGAAAGTAAAGATTTTATTTTTCATAGGGTAGGATTTGTCTTGCTTTT
TAACGATTTCAGGCAGACTTTAATCATAGGGGAGCAGAAAATGGTCTTTC
AGCCTCACACTGAACCTTGAATCGTATATTGTGTCTCCCGTTTAGTTTAG
GTATTCCAACTCTTTGTTGTGATCCTTTTGAAAAACTAGGTCTAAACAAG
TTTGAATATCAACCCAGTGATATTTTTAAATATTAGAAATTTACCGTGAC
TTGATCACGAGGTTTAAGTCCGGCTATGTTTCTAGAGATTCTTCTTCTCC
TATAACTCGGGCAAGATGGAGGATGTTTTCTCCACTGTTTTGTGCTACAT
TTAGACTGGAGTCGTTTATAAACCGTCTAACAATAATGTGGGTGTTATAA
AGATAATACCATAATTTTTACGCCATAATAACAGTTGTCATAGACTATTT
TCTACCTACAATGAGGCCCTCAAGCGAGCTATTTTTTTGTAGCGTGATTA
CGTGATTTCGTGATCAGAGTTACCGCTGGGGGGCCTTTGCATTAGGTTAA
AATCCTGCTGCCAGCTTATTACGAACACTGTCATGTTGTCCACATGAAAA
TCAATAAGATTTTACACCTATCTTGAAGAGTTTTTTTAAGACATTTTTCT
TTGTTTTTTAGAGAAACAAGAATCGTAAAACAATACAATCGGAAGAGAGT
GATGACTAACTTACAATCTTTTAAATTTAAGAAATTTTAAATGTATACTT
AAAAAATTTCAACAAAATAGAACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058570-exon-scaffold_311-1575043694:1101258..1101553 | TCONS_00058570-exon-scaffold_311-1575043694:1101258..1101553 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1575043694:1100252..1100876 | TCONS_00058570-exon-scaffold_311-1575043694:1100252..1100876 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1575043694:1099128..1099242 | TCONS_00058570-exon-scaffold_311-1575043694:1099128..1099242 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1510915933:1101258..1101553 | TCONS_00058570-exon-scaffold_311-1510915933:1101258..1101553 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1510915933:1100252..1100876 | TCONS_00058570-exon-scaffold_311-1510915933:1100252..1100876 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1510915933:1099128..1099242 | TCONS_00058570-exon-scaffold_311-1510915933:1099128..1099242 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1491911889:1101258..1101553 | TCONS_00058570-exon-scaffold_311-1491911889:1101258..1101553 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1491911889:1100252..1100876 | TCONS_00058570-exon-scaffold_311-1491911889:1100252..1100876 | Clytia hemisphaerica | exon |
| TCONS_00058570-exon-scaffold_311-1491911889:1099128..1099242 | TCONS_00058570-exon-scaffold_311-1491911889:1099128..1099242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1099128..1101553 - |
Blast
The following BLAST results are available for this feature:
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