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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058559 ID=TCONS_00058559|Name=TCONS_00058559|organism=Clytia hemisphaerica|type=transcript|length=1911bpRun BLAST on NCBI transcript from alignment at scaffold_311:977944..992762- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058559 ID=TCONS_00058559|Name=TCONS_00058559|organism=Clytia hemisphaerica|type=transcript|length=14819bp|location=Sequence derived from alignment at scaffold_311:977944..992762- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058559 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3) HSP 1 Score: 224.172 bits (570), Expect = 1.816e-62 Identity = 103/155 (66.45%), Postives = 125/155 (80.65%), Query Frame = 2
Query: 752 SLDTCFAPCTPNGCMELIKTTGMEVSGQNAVVLGRSKIVGTPMEELLKWHNATVTTCHSRTRNLPEVVGRADIVVAAVGVPEMVKGNWIKPGAVVIDCGITAVPDSSKKSGQRLVGDCDYKACKERASWITPVPGGVGPMTVAMLLYNTVESCKR 1216
L+ CF PCTP GC+ELIK TG+ ++G++AVV+GRSKIVG PM +LL W+NATVTTCHS+T +L E V + DI+V A G PEMVKG WIKPGA+VIDCGI VPD K +G+++VGD Y KERAS+ITPVPGGVGPMTVAML+ +TVES KR
Sbjct: 139 DLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293 HSP 2 Score: 189.119 bits (479), Expect = 1.759e-50 Identity = 88/158 (55.70%), Postives = 120/158 (75.95%), Query Frame = 1
Query: 268 AQIIDGKDIARRIRDQIKIDVSQLNSET-GLTPGLAIVQVGNREDSNVYVRTKLKFAQQLGMNAEILKLPNTSTEQELLSTVERLNNDDNVHGIIVQLPLDSENPIDSALATNAVSPEKDVDGINDINAGRLARGSLDTCFAPCTPNGCMELIKTTGI 738
A+I++GK+I+ +IR ++K V+QL + G TP LAI+QVGNR+DSN+Y+ KLK A+++G+ A +KLP T+TE E++ + LN D VHG +VQLPLDSEN I++ NA++PEKDVDG+ INAGRLARG L+ CF PCTP GC+ELIK TG+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGV 161 The following BLAST results are available for this feature:
BLAST of TCONS_00058559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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