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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058558 ID=TCONS_00058558|Name=TCONS_00058558|organism=Clytia hemisphaerica|type=transcript|length=1820bpRun BLAST on NCBI protein sequence of TCONS_00058558-protein >TCONS_00058558-protein ID=TCONS_00058558-protein|Name=TCONS_00058558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp MAQIIDGKDIARRIRDQIKIDVSQLNSETGLTPGLAIVQVGNREDSNVYVRun BLAST on NCBI transcript from alignment at scaffold_311:977944..992753- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058558 ID=TCONS_00058558|Name=TCONS_00058558|organism=Clytia hemisphaerica|type=transcript|length=14810bp|location=Sequence derived from alignment at scaffold_311:977944..992753- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:977944..992753- >TCONS_00058558 ID=TCONS_00058558|Name=TCONS_00058558|organism=Clytia hemisphaerica|type=CDS|length=12558bp|location=Sequence derived from alignment at scaffold_311:977944..992753- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058558 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3) HSP 1 Score: 374.015 bits (959), Expect = 4.819e-117 Identity = 176/291 (60.48%), Postives = 227/291 (78.01%), Query Frame = 1
Query: 259 AQIIDGKDIARRIRDQIKIDVSQLNSET-GLTPGLAIVQVGNREDSNVYVRTKLKFAQQLGMNAEILKLPNTSTEQELLSTVERLNNDDNVHGIIVQLPLDSENPIDSALATNAVSPEKDVDGINDINAGRLARGSLDTCFAPCTPNGCMELIKTTGMEVSGQNAVVLGRSKIVGTPMEELLKWHNATVTTCHSRTRNLPEVVGRADIVVAAVGVPEMVKGNWIKPGAVVIDCGITAVPDSSKKSGQRLVGDCDYKACKERASWITPVPGGVGPMTVAMLLYNTVESCKRV 1128
A+I++GK+I+ +IR ++K V+QL + G TP LAI+QVGNR+DSN+Y+ KLK A+++G+ A +KLP T+TE E++ + LN D VHG +VQLPLDSEN I++ NA++PEKDVDG+ INAGRLARG L+ CF PCTP GC+ELIK TG+ ++G++AVV+GRSKIVG PM +LL W+NATVTTCHS+T +L E V + DI+V A G PEMVKG WIKPGA+VIDCGI VPD K +G+++VGD Y KERAS+ITPVPGGVGPMTVAML+ +TVES KR
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRF 294 The following BLAST results are available for this feature:
BLAST of TCONS_00058558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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