TCONS_00058540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058540
Unique NameTCONS_00058540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058540 ID=TCONS_00058540|Name=TCONS_00058540|organism=Clytia hemisphaerica|type=transcript|length=1694bp
AGATACAGATTGAAATCATTTGTATAGAACAAATGCATTTTTGAGACCAA
GNATAGATCTATTTGAAATTGAACTCCAAACATAATGCCGAGATGAACTC
GCTTGTTTCTAAGCATATAAAGgAATTAGGCAAAGTGAACAAAGAAATCG
ATTTAGAATCGAAGCGACGTCGATCTATTATCGAGAAAGAAAAATCAACC
ACTCAAAAACGTTACAATAAATTATTAAAGAAGGCTGAAAAGGAGGGaAC
GTATACGGAAGTTTATAACGAATGTTTGAAAGAAATTGGAGAGCTGAATG
ACAAACAAGACAGAAGTGTTGAAGAAGTAGTTAAAAGTCATCGATCAAAA
CTTAAAGAAATGTTCCAAATATACTATGAAGAACAATTGAGTCTCGCCAA
GTCTCAAGTCCAACCGAAAATCGATGAACTacgaaaaactttgaaagtcG
TCGAAGCAAGCGACAAAAAGAAGTTAATCTCACAACATTCACGTGATATG
GCAACTTTGAAGAACGCACAAGATCTTGATAGATCTAACCGAATGAAGGA
TTTGTCCAAAGGATTCAAAGACCCGGAAGAATTAGCACAACACAGACGAC
GTGAGAACAAGAAACACGTCGAACAATCTGTCAAAGAGCGTCAAAAGCTT
CAATCTCATCAAGAAACCGAATTGGAAACTCTAACCAAAGAATATGAAGA
TTTGAGTGTTTCATTTGATGAAAAACATTCGAAGgatgTTGCCGACTTGG
AAAGTCTATTCCGTGACAAAGTCAAGCTGCTTGATACTCAAGATCTACGC
ACCTTGACACCTAAACTGCTCAGTGCAGACTGTACAATAGGTGGTGGTAG
TGGTTAGATTGATAACACCCGAAGAATGTAATATTTGCTGTATTTGCAGA
TACTCTACGTGAATCTTTGGATATCTTGTATAGAGAATGCACTGATATTA
TGAACACTTTTCACGGACACTTTCCCTTTCGGACATTTTTCCCGGACACT
TGTATGTGTTTTCCATCAAACACATTTCACTGCATTTTGGTGAAGAAATT
ATCTGTTATTTCCAAGCAAGAATGGGGATGAGAAACAAACACACATTTTT
CACACTATGTTCGTTCGTTTATGTACTGTTTTGTCCAACTCTTAGAGTGT
TGTGGAAAGATCTTTGTTTAGCTTacattgtttttatttgttttattcaT
AATTATTGATTTTATTACTGTAATAAGATTTAttatttataaattatttt
tatggactaattttagcaattttattGTTTGGGCGTgtgtgtcaattttt
tttgtgtatATCCATTTAATAACCATTTTATTAGGTTCATAGATATAGAA
AGTAGAAATTTATCactcttcaatttttcttccttACTTTTCATTGACGA
tgcttcttcatttttacaaactttctttaattttattcttttgttttatg
ctttttataattttaagaatgaattttaagatttacattttctctttaat
ttttatacaaatttattatcttttaattattctttttgtcttttACCAGT
TTGTGGTATGTTACTAAGTGATACTACTGTCACCCTATTCTCAAAATGTT
ACAAAACCATAATGGTATCCTAACAGTAGTTAGTCTGGGTTAAAACTTTG
GCCCTAAATCTTCTTATCATAGAATATTCCTTTTTTCTTGGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_311:667138..672373-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058540 ID=TCONS_00058540|Name=TCONS_00058540|organism=Clytia hemisphaerica|type=transcript|length=5236bp|location=Sequence derived from alignment at scaffold_311:667138..672373- (Clytia hemisphaerica)
AGATACAGATTGAAATCATTTGTATAGAACAAATGCATTTTTGAGACCAA
GNATAGATCTATTTGAAATTGAACTCCAAACATAATGCCGAGATGAACTC
GCTTGTTTCTAAGCATATAAAGGTTTGAACCATTTTTTTATTTCTGCATT
TCAGAGATTTTCAAACTTTTAATGAGGCCTCGTTTGATCAATCCGGGCTT
TTTGGACCGACCTGGAGGTCCTATAAATTAACCGTTGTCCGTTCGTTCGT
TCGTTCGTTCGACCGTTCGTCTGTTACCAGCTTTTCTTGAGATTGGCTCA
TTAGTTTTTTCTTATTTTTTGCTCAAAGATGCGTATTAACAATTCCCAAA
ACATGGCCGAGTCCGATTTTTGAGAAGACCATCATTCAATTGTCAATAAA
ACAGATTTTTGCAACCTTCTATTTCTCTNAAATAGGGAATAGGGAAATTC
TTGGTATTGATTATGAGGGCCAAAAATTAAGGTTGTACCTTATAAATGGA
TAAAAACCACCATTATTATTGATTTATGTTTTGAAGGTTGAATCCCAACT
CATATCCACAATATAATCAACACGAAAAAAATATGGTTCTTTTACACGCC
CTTTGTAAGAATAATTTCATGAGAACTTGACACTGAATTTTGGCAAAAAT
TCCAGTCTCAGATCCTAGAAATCTGGACTAAGAAAGTGTAGANCTTCGCT
AAACGCTATATTTTCTGATTGTTTTCATTTTTCTCCTTATTGCTATCTAA
CTTTCATCGTCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTTGGGTAAT
TTGTGGGATATTTTGGATTAAATCTCTTTGGATCTTTGAACAATCTCTAA
GAGACAATAGATTGACCTTCGTACGAAAGAATCTCGTTGTTTGAAATATT
GCCTAAGTTTATGTTTTAAGTTTTATACCTTAATAAAGGTAAATGTTAAA
GATATAAATTTGACCCTGTGCCTCAGAACTGATCTTTTGTTGAGAGGAAC
TTGTATGCAAAATTGCGAAGGGTTGAACGAAGACCATTTTACTTTCTTTT
TGGTGATCTTGGAGCGGGTGAATCGTTCAAAGATCTACTTGGATATTATT
TCGTATAGATATTTTAATTTTTTTTCTCCATAGGAATTAGGCAAAGTGAA
CAAAGAAATCGATTTAGAATCGAAGCGACGTCGATCTATTATCGAGAAAG
AAAAATCAACCACTCAAAAACGTTACAATAAATTATTAAAGAAGGCTGAA
AAGGAGGGGTAAGACTCCCAACATTGTATGATTAAATAAAGTTTTTCAGC
ATTTTTCATGAGCATCTGCTAGCAATAATCTATCCGGAACTGAAAAAGGG
TGGATTCGAACCGGGAACCCCTGGCTTATGGCGTTGACGCCTTAGACCAA
TCCTTCATCCCTTATTATTTTAATTGAGTTTCGTGGTCTAGTTTTATATG
NACGCCTTAGACCAATCCTTCATCCCTTATTCTTTTAATTGAGTTTCGTG
GTCTAGTTTATATGGAATCACTTTCCCGAATTTCACTGTAACATTTCAGG
TCTAACATGTTTTACAAAGTCAACTCTCCCTAATTTGAACCTCTATAATG
CGAATCTTTCAATAATTTGAACTAAAACATATTGGTCCCCTCAGCAGGAA
ATATTGGAAAATGCTCTCTTCTTGTTGTGTTTCTCTGCACAATTAAGAGT
GCTCAATACTTAAGTAGAGCTTGTTACATAAAGATTTAAGAAACGGTGTA
TTTCTGTATTTCTTAAGAAACGGTGTAATGCTCTCTATAATTCGAATGTT
TTTCTTATTCGAGGCCCTTGAATTTCGAATTAAAAAAGAGAGGTGACTAA
ATCAAATTTTTCAATTCTTTTAGAACGTATACGGAAGTTTATAACGAATG
TTTGAAAGAAATTGGAGAGCTGAATGACAAACAAGACAGAAGTGTATGCT
ATGAATCTTTTTCTTTTCAATACACTTATTACTTCTATGTTTTGATTCTG
TGTTTTTTTGCACGAAAAATGTCAAATAAACAAGTTGTCTGATTGGGTAA
TGCATTCAAGTGTGCTGTTTTTAGCCAATCAAATTTCGTTTACTTTACTT
GAATTTTTGGCGTATATTACACGGAATCAAAGTAGGGAACCGTTTTTTCA
TTTTCCTCTTAATGGACTTTTCTAGAAAAAAATTGAATATGGGCGGCGGA
GAATATAACATTTTTTAAACCCCCCCCCCCGGACATGCAAAATTACCTCT
AAACAGTGCAAATTTTCTGGAAGAGCCCAATACGGCGATAACTATTAACT
TTTGCAAAGTGTTATGTATTTTTATTTCTCTTCAGGTTGAAGAAGTAGTT
AAAAGTCATCGATCAAAACTTAAAGAAATGTTCCAAATATACTATGAAGA
ACAATTGAGTCTCGCCAAGTCTCAAGTCCAACCGGTAAAATCATTGAAAC
GGATACATTCGTCTCGCGATACATAGAATTATTGCGGGCTTAGTTATTAT
AACTCCAATTGTGGTCTATATTAATCCCATACTGTTTGGTTAATGTTGAC
TCAGTTATCTTTTGGAACAATCATCTTATATCGAGATTTTTCATGCATTT
GTATTTGTAACAAATTAATCTAAACATTTCGAGGCATAATTCGTAAAAAA
GAATGTTAGACTCGTAACTTTTTCAAAATATGAAAGAAAAAGAAATTTTC
TCCGCTGTGCAATGATCTAAATTTAAATTATCTTTCCTTTGTTCAAAAGA
TTAATAATGAAAATGAATTGATGTCATCAAAATGAGACAGTTTTAAGCCA
ATTATGAGGGGCAACTTTCAACACATCATTTGCTGATTCCTGCGCTATAC
TATGTTCACCTTATTCATTGTAGAAAATCGATGAACTACGAAAAACTTTG
AAAGTCGTCGAAGCAAGCGACAAAAAGAAGTTAATCTCACAACATTCACG
GTAAGGCCATATTCATATATTTTTTACCCCTTTCTACCCGATTAAAGTTC
TTTTTACTACCCTCCCCCCCCCCCGAATTTGAGCATTGTGTGTTTACAAG
AGTGTGCAAATCACATTTATCATTACGTTAAACAATGCATCCTGAAGGAT
TCAAGTCAAGAATTGGAAATATTTTATACAAATGAAAATTGTTAACTTTT
CATAGAATGTTAAAGCTTTTTTTTTTAATTTCCATGCATCATTTCTTTAA
CAGTGATATGGCAACTTTGAAGAACGCACAAGATCTTGATAGATCTAACC
GAATGAAGGATTTGTCCAAAGGATTCAAAGACCCGGAAGAATTAGCACAA
CACAGACGACGTGAGAACAAGAAACACGTCGAACAATCTGTCAAAGAGCG
TCAAAAGGTATACCATTTACAGTGTTTGAAAATTCTTTTCGTTTCAGGGA
GTATTTAAATCATTGATTTCCTATGAGGGGAAACTCAAGGCAAACCTCAT
CTATTTTTGGTTGAAAAGCAGGGATATTTCTTCGCTTTGAATTTTGTTTT
CACTATCTTCTTTTTTTGTCAGCTTCAATCTCATCAAGAAACCGAATTGG
AAACTCTAACCAAAGAATATGAAGATTTGAGTGTTTCATTTGATGAAAAA
CATTCGAAGGTATAAACCGCACTATCATATACACGCTTTTTAAAAATAAG
AACAATTTAAGAATGTAACAAATCTTTAAAGCTTTTTCGGATGTTCTTAA
TTCGAGTATTAAGCCTGAAAATGGTCATAAGATTTTCATTTTCCCCATTT
GTATGTATTTTTATGTGTTTTCCTAAGAAACTTGGTGTTTTAGAATCCGC
GAAGCCTTAAAATGCTCTTAACTTGTTCTTGGTATTTTGGTCATCGAAGC
CCAAGCCAAATTCTTTAATTCTTATATAGTTTGTTCTTATAAGAAACGGA
ATGGCCGTCAAAATGACGTCTTTTAAAACGATGTAATGTTGCCAGCTTTA
AAAGGCATTAAGTAAGAGGTTATTATTAATTCGTCTAATGTTTTTATTTT
TCAGGATGTTGCCGACTTGGAAAGTCTATTCCGTGACAAAGTCAAGCTGC
TTGATACTCAAGATCTACGCACCTTGACACCTAAACTGCTCAGTGCAGAC
TGTACAATAGGTGGTGGTAGTGGTTAGATTGATAACACCCGAAGAATGTA
ATATTTGCTGTATTTGCAGATACTCTACGTGAATCTTTGGATATCTTGGT
GAGTTTTAGGAGATATACGTTGTCATGTTGTTGTTGTTGGGAATAATTTA
GAAGAAGGTCTTCACATACATTCACACACAAAAAGCACAACATCAATACG
ACTGCTTTATGTTGTGGTGGAAAGAAGTAATGAAATAAAGTATCATTTGT
TTTTTTGTGTTCGTGCCAAAATAACTGTTATCAATGTTCAATCATGCACC
CTTTGTAATGCACGCACTACAGAGAAATAATTTCTCAAAGAACACACCCC
TTTTTTTATATTAACTACAGTATAGAGAATGCACTGATATTATGAACACT
TTTCACGGACACTTTCCCTTTCGGACATTTTTCCCGGACACTTGTATGTG
TTTTCCATCAAACACATTTCACTGCATTTTGGTGAAGAAATTATCTGTTA
TTTCCAAGCAAGAATGGGGATGAGAAACAAACACACATTTTTCACACTAT
GTTCGTTCGTTTATGTACTGTTTTGTCCAACTCTTAGAGTGTTGTGGAAA
GATCTTTGTTTAGCTTACATTGTTTTTATTTGTTTTATTCATAATTATTG
ATTTTATTACTGTAATAAGATTTATTATTTATAAATTATTTTTATGGACT
AATTTTAGCAATTTTATTGTTTGGGCGTGTGTGTCAATTTTTTTTGTGTA
TATCCATTTAATAACCATTTTATTAGGTTCATAGATATAGAAAGTAGAAA
TTTATCACTCTTCAATTTTTCTTCCTTACTTTTCATTGACGATGCTTCTT
CATTTTTACAAACTTTCTTTAATTTTATTCTTTTGTTTTATGCTTTTTAT
AATTTTAAGAATGAATTTTAAGATTTACATTTTCTCTTTAATTTTTATAC
AAATTTATTATCTTTTAATTATTCTTTTTGTCTTTTACCAGTTTGTGGTA
TGTTACTAAGTGATACTACTGTCACCCTATTCTCAAAATGTTACAAAACC
ATAATGGTATCCTAACAGTAGTTAGTCTGGGTTAAAACTTTGGCCCTAAA
TCTTCTTATCATAGAATATTCCTTTTTTCTTGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036877XLOC_036877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058540-exon-scaffold_311-1575043694:672252..672373TCONS_00058540-exon-scaffold_311-1575043694:672252..672373Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:671116..671240TCONS_00058540-exon-scaffold_311-1575043694:671116..671240Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:670431..670500TCONS_00058540-exon-scaffold_311-1575043694:670431..670500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:669940..670038TCONS_00058540-exon-scaffold_311-1575043694:669940..670038Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:669424..669500TCONS_00058540-exon-scaffold_311-1575043694:669424..669500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:669017..669170TCONS_00058540-exon-scaffold_311-1575043694:669017..669170Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:668765..668851TCONS_00058540-exon-scaffold_311-1575043694:668765..668851Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:668176..668369TCONS_00058540-exon-scaffold_311-1575043694:668176..668369Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1575043694:667138..667903TCONS_00058540-exon-scaffold_311-1575043694:667138..667903Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:672252..672373TCONS_00058540-exon-scaffold_311-1510915933:672252..672373Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:671116..671240TCONS_00058540-exon-scaffold_311-1510915933:671116..671240Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:670431..670500TCONS_00058540-exon-scaffold_311-1510915933:670431..670500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:669940..670038TCONS_00058540-exon-scaffold_311-1510915933:669940..670038Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:669424..669500TCONS_00058540-exon-scaffold_311-1510915933:669424..669500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:669017..669170TCONS_00058540-exon-scaffold_311-1510915933:669017..669170Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:668765..668851TCONS_00058540-exon-scaffold_311-1510915933:668765..668851Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:668176..668369TCONS_00058540-exon-scaffold_311-1510915933:668176..668369Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1510915933:667138..667903TCONS_00058540-exon-scaffold_311-1510915933:667138..667903Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:672252..672373TCONS_00058540-exon-scaffold_311-1491911889:672252..672373Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:671116..671240TCONS_00058540-exon-scaffold_311-1491911889:671116..671240Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:670431..670500TCONS_00058540-exon-scaffold_311-1491911889:670431..670500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:669940..670038TCONS_00058540-exon-scaffold_311-1491911889:669940..670038Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:669424..669500TCONS_00058540-exon-scaffold_311-1491911889:669424..669500Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:669017..669170TCONS_00058540-exon-scaffold_311-1491911889:669017..669170Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:668765..668851TCONS_00058540-exon-scaffold_311-1491911889:668765..668851Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:668176..668369TCONS_00058540-exon-scaffold_311-1491911889:668176..668369Clytia hemisphaericaexon
TCONS_00058540-exon-scaffold_311-1491911889:667138..667903TCONS_00058540-exon-scaffold_311-1491911889:667138..667903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:667138..672373 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68229	2.02918	0.416357	0	108.106	81.8886	47.6849	54.8714	34.1425	37.018	33.2101	31.7246	35.2241	28.8323	17.0512	17.274	22.8316	30.4328	42.0893	44.8996	26.0976	26.7676	13.9596	16.5065	29.1606	26.6949	15.9888	16.348	12.4859	13.1746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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