TCONS_00058539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058539
Unique NameTCONS_00058539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058539 ID=TCONS_00058539|Name=TCONS_00058539|organism=Clytia hemisphaerica|type=transcript|length=2741bp
caaacaatgatacagcaatggataattactgtttcatgcatattgtaata
atcaTGCATgggtgtatcattgtttttctgctggactacataattattca
acagggtggcctctttgaaaaaaggtctatgatgGTCGACAccgtaaatt
ttgatttaacccCTGCCTCctgacattttgaaaatgttgaaagaataaaa
aaatgacaCAAATGGTCTAAAATTTTTGATCAAGCAGCTTCGTAACTGTT
TAACTTGGCTTTAAATTCAACATATAATGTCAATTACCCCTCAGCTTTGC
CTTATGTCCAAGttcctcttctttttcttcacttGCCTTTCTCCACAACa
cactttaaaaattttcagtgatttttttACGCCATGCCACTTTTTGATAT
AAACAATTGGCGTGGTCAATGCAACTAGGTTACTAGTAAACGTGTCGGAC
CTTATATGATCGAAATTTATTGTATGGTGTGTGTCCATAGTCATCGAATC
CGGAGTGTTTTCGTTCGGTCCGGATTGGATTTGAAGAtcgaagaaacaac
aaaaacactGGGAGGACTGCGTAGCACCTTGTCGCCTTGTATGTTGTAGG
AAAAATCAATCACCCATCAATCATGACTGATTATGAAAGAATACTGTGTg
ttaaaaatgaagtttttatgTACAAGATACCCCCAAGGAATAGTGCAAGA
GGATATAGGGCTGCAGATTGGAAGCTAGAACAACCAGACTGGACAGTTCG
AATGAGGATTGTGGAAATGAATGGTAGATGTATTTTGAATTTCGAAGATA
AAATGTCAGgTCAGCTGTTTGCTAAGGCACCAATCGATGAATATCCAGGT
CCAACAGTTGAAGCAGTATCTGACAGTAGTCGATATTTCGTTATCAAAAT
ACAAGAAGACGGAGgAAGGCATGCATTCATTGGAATGGGTTTCAGTGATC
GTGGTGATTCTTTTGATTTCAATGTTTCTCTTCAAGACCATTTCaaacgc
GAAAAATTGGAGGATGAAATTTCCAAAGAAGAGAAAAAGCCACAGAAACA
TGTTGACATGAGTTTCAAAGAAGGACAAACCATCAAAATTAACTTCGGGA
ATAAATCAGGACAAGATTCAAGGCCAAAACCTAAAGCACAAGGTGGTAAT
ATTGGTTTCCTACCGCCTCCACCCGGAGGAAACACACCTAAACTGGTGCC
TCCGCCCGTAGGAGGTGTACCACACGCACGATCAGCGACACAGCCTGCAC
AACAAGATCCATTTACGAACGACCCATTCACGCAACAACCAGCAACACAG
ACTCAACAACAACCTAAAAGTACATCCGATTGGGGTGATTTCTCATCGTT
CGGCCCATCAAACACACAAGCATCAACAAATCCATCAACGACGAATAACA
GCGGTGGCGGTGGAAATTGGGTCACTTTTTAAATTCAGATGAGTAGAATT
GTAGTGTTGTTTCCAATGGtatctttatttattttgaatgaatttgagag
aaatttcgtTATTAGTTGGTTATTTGCGattgattatttttcaaataccA
TGGAATGATGGAATACTCACAAAAAGGAAATCAATGATAATGAattaaat
tgaatatttttaattgGTAATTTATGGACTTGCAACGAATGAAGTGTTTA
GGTTTTGACTACGGCGTGTCTGGTCAAAATTGTGATAAATGCGCCTCTAA
TGTGtaacacaaaaaaataattaataaaactgaaaattcgtAAAACCTAA
AGTTTTTCTGTGAAAGTTAttcatttgtcaaatttttgaatAAGGTGCAA
TACACTGCCATGATTAACGCACTAGATAcgaaaggtgatttttttgaaaa
ttgctggGCTTGAAATAACGGTAAGACATTGGatattgtccgacccaaaa
tgctccttgtccgacccaaattgctccttgtccgacccaaaaatcataat
tttcaaactaaagaaaaaactctgatcggacattttgtccgaccgACGAA
ATCGTTATTTCAATCCTTGAAATTGAGTtgcagttttttaaaaattaatt
ataattTGTTTCCTTCCTAATTTTTAATAGCAAACAACTCAATAATTACA
TAAAGTGCATCCATTAAAATGAAATAGAATTTGAAATATAGTAAAAccct
tgaaatttttttaacgagATTATATTGGTTTTTATTAAGGCAAATGTGAA
AAATTGGTCGTTGTATTCAAAATTATGAAgactttttctttaaaatgaat
CCTTTTAATCATTTGGTATGGACGCACTGTTTAATTTGTAGATATTACTA
NTATTGGTTTTTATTAAGACAAATGTGAAACATTGGTCGTGGTATTTTAA
ATTATAAggtctttttctttaaaatgaatCCTTTTAATCATTTGGTATGG
ACGCACTGTTCAATTTGTAGATATTACTGCGAGTTACCGTTTATGTTTGT
ATTTTtggcttttctttttttagccaGAAGGGAGTATAGTTATTAATTTT
GATCAATTCTAATGAATTAAATTTGGCATAAATATCATCTAGTTTTGTCT
TGAAGATTGTATTTGTCTTAGGGAAAAACATTTCGTTTGTAGATTTTTTG
CGCTATAAGCGAATTTAgctctatttttttctttattatcttttttatgt
ttcttaatttttgtatAGTAGAATAATAATATGAGACTTTTCCCTAAATT
ATGCTGCGCCTTATGTACTTTCATTTAAAACTCTTTCCCTA
Run BLAST on NCBI

transcript from alignment at scaffold_311:645041..656682-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058539 ID=TCONS_00058539|Name=TCONS_00058539|organism=Clytia hemisphaerica|type=transcript|length=11642bp|location=Sequence derived from alignment at scaffold_311:645041..656682- (Clytia hemisphaerica)
CAAACAATGATACAGCAATGGATAATTACTGTTTCATGCATATTGTAATA
ATCATGCATGGGTGTATCATTGTTTTTCTGCTGGACTACATAATTATTCA
ACAGGGTGGCCTCTTTGAAAAAAGGTCTATGATGGTCGACACCGTAAATT
TTGATTTAACCCCTGCCTCCTGACATTTTGAAAATGTTGAAAGAATAAAA
AAATGACACAAATGGTCTAAAATTTTTGATCAAGCAGCTTCGTAACTGTT
TAACTTGGCTTTAAATTCAACATATAATGTCAATTACCCCTCAGCTTTGC
CTTATGTCCAAGTTCCTCTTCTTTTTCTTCACTTGCCTTTCTCCACAACA
CACTTTAAAAATTTTCAGTGATTTTTTTACGCCATGCCACTTTTTGATAT
AAACAATTGGCGTGGTCAATGCAACTAGGTTACTAGTAAACGTGTCGGAC
CTTATATGATCGAAATTTATTGTATGGTGTGTGTCCATAGTCATCGAATC
CGGAGTGTTTTCGTTCGGTCCGGATTGGATTTGAAGATCGAAGAAACAAC
AAAAACACTGGGAGGACTGCGTAGCACCTTGTCGCCTTGTATGTTGTAGG
AAAAATCAATCACCCATCAATCATGACTGATTATGAAAGAATACTGTGTG
TTAAAAATGAAGTTTTTATGTACAAGATACCCCCAAGGAATAGTGCAAGA
GGATATAGGTAAAACTTTTCTTTCTATTCGTCAATAAATTTAGGAACCAA
ACACCCCCCTTTTTTTTCTTTTTTTTTTTGGAATCGCAATCAAGCCAATC
GAACGTAATCGAATGCGATCAAATAATTGGGATTGATTGATTGTAGAACG
TAATCGAATCTCAATCGAACGGCCGATTCCTGGGTAATTTTGATTCGGCG
TTCGATTCGTTCGATTGACACACCGTCACGTGTGCGTTTGGTTTGGGAAC
GCGAAACACGAACGCGAACTACCCATGTCTAAACTTTTCAATATATCTCC
AGAACTAACAGATTTTTTGAAATTCTGTAAAAAGCTCTAAGTTCCTGAAT
AGTTTTACTATGTTCTGTGAAAAAATCATAACCATCAGTCAAATACTCGT
TCGTCTATCTTTACTTGAAATAGGGACGGGATAAGGCCGATGAAATTTAC
ATATGAGTTTACCGTCGTGAACTTACCCAAAAATAGATGCGGCATGATTT
CATTATTCATTATTCATTATTTTCCCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCA
GATATATGGGCGGGACGCCCACTGCAGTTGTAGGATTGAGGGCGGCAGCA
TTTTCTGTAATAAATCTTCTTTGTTTACCCGTGTAAACATGCGTATAGAC
GATTTTAACAAAGATAGAGGTTGTAGTTGTAAAGAAATATGGAAATAATG
AAAAATTTATGAATTTTGAACATAATGAAATTTTCATGCGGGTGCTTTTT
AGAGATGCGGGCGGCCGACGGTAAACTCATATATAAATTTCATCGGCCTA
AGGCTGGGACAATCTATTTAAAGGATATGGACAAAAAAGGCACTTTTTTG
GGTGATAATTAAGATTTTACTTAAAAACTTTAATTCTCTTACCCCCGTCT
CGCCCCCCCCCTGATATGAGCAAGGGAACCATAATGGCCACCCCTACTGA
AAATTTCAGATCAAAATAAACAAGGAATTAATTCCTGTAACTTGAAGAAA
ATTGGAAAAAGCTGGTTTTTGACTGTTTCTGATCCTAAAGTGCTATTTAG
TAAAAGCTATGCAATTTATGTTTGGATTTCTAGAAAGCTTACCCATTCAT
TGTTAATACATTTTTTATTTGAAAGTAATCTCTTCATGGAATAAAAAGAT
ACAGTCAATCTTGTAGGGTCATTTTTCAAAAATTTTTTGCCAAATTCGAT
TTTTGCATTTCGCCAATTTAACCTACGCAAACGCACGTGCCGTCTGGGGA
AGTAGATAGATAGAGGATGGCACAAACCACACAAAAAGCCAGTCTAGAAA
GGAGGAAAATATTACGTCCGAGATGCGCCAACTTAACTGGGAATAGTTGA
AAGCAGGCTGGAACTTCGATTTTTGAGGATTACGATTTTACCAGTTTTTT
AGCAATTTTTGCCTCGCTAACCCAAATCTCGCAACCTCTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTCAGCATTCCGAAAAAAACGCATAGCAGAAATTTTTTCATCTTCA
CAGGATTGATTCTCAACAACAAAATACATCTTTTGGTCTTTGGGTTTGTT
TCTGACTTTTTTCCTTCAAAGAATATCAATCACTTTCCTTTTCCCCTTGA
GCGTGCGAGAAAAAAATGATTAGCTCGCGTTTTTGCGTGTGGATTTGATC
CACTCTTTATGATAAAAAAGCTACCGTTGCTTGGAGTTGAGGCTTCTTCA
CAATCACAATAAGTTTTGTCCGAGGACTTCCTCTAACCTTATATGTCCAG
CTGCCATCCTTTTGTAATTTTGTTTTCTCCTTTGCCTTTCTATGCCATTC
TTTGATAGTTTCGCGTTCTTTTTTCAAGAAATCATTGGTTACTCTAAATT
CGTCTTACTTTAATTTGTGGACTGATGCCAGAATCTGACGTTTCTCTTCT
TTGTTCTTTAGCAGTGTGGCTCGAATCCTTCAGATCCTTGGTTAGAAAAA
GCTACACCTGTTTACTTTTTTCTTGCCAGATTCAACAAGCCATCAACAAA
CAAAATTACCAATGACATCTGAAAATTCACATGACCTTTCCACAGTAGAC
ACTTCTAAATTATATGCCATTAGGAAGATATTCAGAAATTAACCAATCGG
GTTTACAATCGGAATTAATACTGTTTTACCTGGGGTTAAACGTATAAAAG
AAAATTGAAACGGTTTATTTTTTTCTTCATTATATATTTAAGTTTCCGTT
ATCAAAATTCTAGAAATGCTAATTTGTAGACCATATTAGAAAATGTTTAT
ATATTTCGCTAATTAAACACTTACAGAAAGATATATTTCTTACTATTTTT
ACCCCGCTTTTTAAACATCGTCTTCTGTGGGCATGATATAAGGCAGAGAC
AAAACACCCTCATCGTAAGATTCTCGTGGGTCGTCTCATTGTTTGTTCCT
TTAGTCAAGTCTGTTGGTCCTATTGTTCATGCTAAATCCATACACGATGA
TGTCAATGTTTGGCGGCATACCTGAAAATAAAAACAAAAAGATTATTATT
ATTTTTGCATAAATTACGCTACATTATACGTTATTATAAAATTATACAAA
ACGAGAGCAAGGCTAGACCGCCCGCATAGAGAGCGTGAGCCCTAATATTT
CAGGGCCATCAGGGGAAAACAAAAGTGATCAATGTTCTTCGAAGGAAGAA
CTTGTAAAAAAAAACTCTAGACAAAAAGATGTCTTTCGAGGTTGGGAATG
GATCCTGCCGAGATGGAAAAAAGTTGACTAGGGTTTTTTTGGCAAACCCA
AAAAGTACTCTAATTTTTTTTCTTCCCTCAAGCCCTGTTGAAGCCCCTGT
ACAATTTTTTTTTGAATAGCCCAATGATTTTCCAAAAAAAAGATTGCCCT
GGTGGGATTCGAACCCACTAAATGCAAAGTTCCAATGATCAGAAACCCAA
TGCTCTAACCACTGCACCATAGATTCATGCCAAGAGAGTGTTTCTGACAG
CTATTTATATTGTACAAACTACAGACCAGGCTATAATAAGAGAAAATCAC
AAAATAGTGTTTATTTCAAGCTCCAACCCTGGTACCCTAACTGATAATAA
CCCAATTCCTAGCCAATCTGATACACAACCACACCCAAATCACATCCATA
CCCAACCACACCCATACCCAACCACACCCATACCCAACCACACTCATACC
CAACCACACCCATACCCAACCCTACTAATTTGTCTGCAGGTCCTGACAAT
ATTCCTGCATGCCAGATCAGAAAAATATATTTGTGTCCTTTGCTTTTTTG
AAGAAGCCATCACCTGGCATCGTTGCAGCATGAGATTCTGGACTAAGATT
CCACTGACTTTTCCCAAGAAAATTTCTTTTACTTTATTTTCACTTACTGT
TTAAATCTCTTTGACAACAAGTTTGTTTTGATACTTCAACCAAGTTTATC
AATCAAACTTTCGCCATCCCATAATCACCAAATGTATATTTAAAGCATTT
TGCATAATTTGAAGAAGTAATTAACAATTTAATCACACACTCGCTGTTCA
CTCGTCTGATAACATCTTGATGGCATTATTTGTTTTATGTTGTTTTTCTC
TAGAGACGCTTTTTCCAGCATGTATTATTGATTGACATGTCAAAGTTACT
GAGTGTCAATAACAGATCTCACAATTTTCCGCAGAAGAACAGACTTTTAT
TATATCTGTTCTGGACCCTTGTGCGATCGCATTTAGGGACACTGTCAAAT
CAAATGTACAAAAAGTGCACACTGTTAAAATGGATGATACCGGGTGTGCC
ACAAAAAAGTTTCTCTCTTTAAAACTAATTTTCTAGAAATCTAAAGATTT
TAAAAGAACCATTCCTACTTAACTGGAAAGAAGAAAGATAAACTTAAATT
TTGATGGTTCATTTATTAAATTCGATTCATTAGATCAAAAGTTATGTTCA
ATTGAATAAAAAAGTTACTTTCTGAAATTGTTAAAAAACGTTAAAAATCG
ACCTATCAAATCAAACAGAAGCATAATTACACGATACATCAGTATTTTCG
TTTCAGTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAT
AAAAGGCAGAAAATTCGTCGAAAAAGGCAAAAAAATCTGGTAAAATTCAT
GAAAATACATAAAATATTGGTTTCGAGGTAGATCCAGCCTTACACAGACT
CTATCCAATCTAAAACCGAAAATCGGAGGAAAATTTCGGTAAAAGTAAAT
TAAAGTGATTTTGATGAAGATTTTATACCCTTTCGGCCTTTCAGTTTCGA
AATTTTAATCATGTAAAGGTTATTGCGATTGCCAATTTTATATAAAAATT
TGATAGGTCGATTTTCAACGTTTTCGAGTACTTTCAAAAAGTAACTTTTT
TATTCAATTGAGCATAACTTTTGATCTAATGAATCGAATTTAATAAATGA
CCCATTAAAATCTAAGCTTATCTTTCTTCTTTCCAGTAAAATAGGAATTG
TTCTTTTAAAATCTTTAGATTTCTAGAAAATTAGTTTTAAAGAGAGAAAC
TTTTTTGTGGCGCACCCGGTATAAAAGGACATGTTCATTAAAAGCCACTA
CTAAATCAATCATTGAAGAATTTCAAAAGTACAACTTTAGCTGTAACTTT
TTTTGTAATTGTCACTCACAGGTCAATGGAATTTTTCAAGGATTCTTTAG
GTAAGATAAAAGGGATTGTTTTTTCCCCCGAAAAAAGCAAACGCTAAAAA
AAGAAATATGATGAAAAGTATACAGTGCACTGACTATCCAATTACTTTTT
TTTAGGTGTAAGGTCTATTTTTTTGACATTGCAAATTGTTTAGTTGGAAA
CTTTTTTCTGAAAATTGGAAAAAACCAAGGAAATTTTCCTCAAAATTGCA
AAATGTGTAAGAAATCAAATTTTTCAAAAACTTCCTGAGACAAAGTCAGG
CTAGCTCTAAAGCTCTAAAACAGCATCTAGTAATGGGAATCCAAACTGTA
AAGTGCGCTCACAAACATCAATTTGTCAGATGTAACAAAATTAATAATGG
CACTGTAACCATTGACAATCAAACAAAGCATTTTCTTTCAAGGACCTTGT
AAACATTCGAACAACTTCCATCGAGATAATCTGCTGCAGCTAAGTAACAT
TTTGCACAGTTTAAGGATCGCGCCAAGTTGTAAAAAAGCCACCCGCGGAG
TACACCTCCCTCACAGGTGAAAATGTTTAATCTGTCAATCATTTTCTCAA
GCAAAGAGTACGCGAAGCGATTCTAGCTTTACAATATTGCCGCAGATCAT
CATCACGACTTTTGAAAAATTGAAATTGAAAGAATGCTTAGGATAAACCA
AACAGCAGAAATTGATTTTTTGAATTTCTTTTGACTGCAATGATTAGTTC
CCGCTAAAATTAGTTCCCTTAAAGGTAGATTCAGGGCTTTTACTCAATGG
TCCTTTGCCTTTAACCAAACTTATGATAATTATGCATTAATATGTCTTTG
TTTTGATGCTGAATTTTTTAATTATTCAATATGACATCCTGACTAGCAAA
AGATCTATGGTGTTTACTTGCAAACTGTCTAAAGTGACTAATTTTTCAAC
TCAAATGAATAATCTTTTTTCGCGAGAAGTGGAATTTTAGTCTGAGAAGT
GGAATTATAGTCTTGGAAGTGGAATCTTATGCCAAACAATGGTAACACAC
TCCCAAGGGTTTTTTCAAATTTTAATTTTTTGAAAAAATCAGCCCTCAAA
ATGACTATTATTATATTCAGGGCTGCAGATTGGAAGCTAGAACAACCAGA
CTGGACAGTTCGAATGAGGATTGTGGAAATGAATGGTAGATGTATTTTGA
ATTTCGAAGATAAAATGTCAGGTTAGATTTTTCTTTGTATTTTTCTATTT
CTTTTATAAGGAGGAAAACCATTTTCGTTAAGGCTATCTCAGTTAAAAAC
TATGACAAAAAACATTTAAGAAGAGCCTAGATAGTGAAAATTTGGAAGAT
ACACAGAGAGATTTGGAGTTCAGAATCAAAATGTAAAGGCTTAAATGTAT
AAGGTTTGTGGCAGTGAAATTTGCTGGATTTAATCAATACCACAGGCCTG
GCCATGAAGAAAAGCCTGCGTGTGCCATTATAGCACTTGCAAGCCTTAAA
TTTGGACTTTCAATACCTGTTTTTGCTTGATTTAGGCGTGCTATTTTAGC
ACTCGCAAATAATTTTACGTGTGTGCTAGCGTGTGCGCGTGCTATAGCAC
GCCATTCAAGGCCAGGCCTGATACCACAATAATACCCTCTAAATTCCCCT
ACTGCTACAATTGTAACATGTTTCTTAAAAACAAAGATTTTGAGATAAAA
CTCTAGTGCTCAAAGAGTTTGACGTCAATCGATACTTTTATTTTTCGAAA
TTTCAGGTCAGCTGTTTGCTAAGGCACCAATCGATGAATATCCAGGTCCA
ACAGTTGAAGCAGTATCTGACAGTAGTCGATATTTCGTTATCAAAATACA
AGAAGACGGAGGTATCTTATCAAGGATTTATTAATGTCTGTTTTTGGTGA
AGCTATGATAAAATTATAAGCCAGTATTTTTTTTGCCAGTTTAATTTATT
CATACCTTTGTGTGCTGTTTAAAATGTATCATTATTTTGGTTTTCTTGAA
AAGCTTCAGAAATCCAATGATTGTATTAACCTCTAGCCATTCAAATTTTT
AATTAAAATTCAATGAAATTTAAAGATCTCTTATATAAAACTTACTAATC
AAGCTAATCAAGTTTCTGAAACTCAAAAAACACAAAGACGGGGGTAACTG
TCGGACGGGAATTTTGTACCATGATACATATCCATATATCAAAATCAGAG
GGGATGCATGCAGCCTAATACTAAACTAGATCAGAAACATGGACATTTGA
CATAAACTTTTACATGAATGAAATGAACTTTTTTGTATTACGATTTTGTT
TACCACTTGTGGTAACAATTCAATTTATCTGATTTTCTAAAAGCAATTCG
CACATTTTCCTCTTAAAATTAGTTTTTCTTTGAATTTTAGGAAGGCATGC
ATTCATTGGAATGGGTTTCAGTGATCGTGGTGATTCTTTTGATTTCAATG
TTTCTCTTCAAGACCATTTCAAGTATGTTTTTTTTTAACTGTTTGTAACT
TTTTTTTTTAATTTTCAACTGACCAACTTTTAATACTCTGCTCATTACGG
ACCTCTTTTTCAAATAGAACACAGTAATTACTTTTGAACCGGACATTTTC
TTATATCTTTCAAAAAAGTGTTATCAATTTTGATAAAAAGGGCAAACTCC
TGATTATGTCTAATTACATTGAATTTTCTTTTAAAAACAAGATGTGCAAT
AGTTTTATGCATGTAATAGCTAGTAAGTTCAACCTTATAATTGTCTCGTA
GATTTTTAAGTGAATTTTGACACAAACGATTGACTTTGTTTTTCGCAATC
AACGAAAATTTAAATATTTTTTTTCAGACGCGAAAAATTGGAGGATGAAA
TTTCCAAAGAAGAGAAAAAGCCACAGAAACATGTTGACATGAGTTTCAAA
GAAGGACAAACCATCAAAATTAACTTCGGGGTATCTATTATTTGAGAATT
AAGGAAATGGTTTGGTTTAGATTTTCCCAACCTCCCAGAATCTCCAGGAT
TAACAATATCATTGTCCGATAATAATAAAAGGCACAACAAAAGATCATGG
TACCGTTTGCATTTTTTATTTTTTTATTCTTTTTACGTAAATACTTTGTT
CCTTTTCAGAATAAATCAGGACAAGATTCAAGGCCAAAACCTAAAGCACA
AGGTATGCTGAATTGATTTTGACATTTTATTCGGTTACAATGTTTCTAAT
TCGAACTTCTATTATTCGAACTAAAATATTGGTCCCCTCAGCTGAAAAAG
TGATTTAAATTACTCTCTGTATTCGAATCTTTTGTCCCTTAAACATCGAA
TTAGAGAGAGTCAATTGAATGTTTTTATTTTAACTCTACTCTGTATGAAA
TTGAAAGGTTGAATAAACGAGGAGATAAATTCGACAGTGTTCTGCGCTTC
TGCGTGAAATGTATCAGTCAAGGAGACCTTCACTTAATCAGCTGAAATGT
TCAAAGCATAAAGTAGCTCATCCAAAGCTAAGAATTTGCTCATTTCATAC
TCTGGTATTTATCTAGCCCAGTTTTTTTATAATATATTTTTTGAAAAAAT
TCTAATGATATTTTTACATTTTAGCAGGTGGTAATATTGGTTTCCTACCG
CCTCCACCCGGAGGAAACACACCTAAACTGGTGCCTCCGCCCGTAGGAGG
TGTACCACACGCACGATCAGCGACACAGCCTGCACAACAAGATCCATTTA
CGAACGACCCATTCACGCAACAACCAGCAACACAGACTCAACAACAACCT
AAAAGTACATCCGATTGGGGTGATTTCTCATCGTTCGGCCCATCAAAGTA
AGTGGAATTATTTTTGAAATAGATTTTTCGAGAAAGATGGTATTTTCCCT
CATTAAAAAAAGAGAAGTCATTTTTCCTCGCTCAGGGACAAGCAGTGACT
TTTCAATTCTTTCACAAGTTTTCACGGCACCATATACACTGGAAATTCGT
GCGTTCTCAATAAAGGAAGAAAATATCACACACACGATAATTAACGGGCA
ATGCTTATCTGAATTTTATTTCATTATCATTTTATTTTTCCTACCGTCAT
ATTGTTGAAACTACTCTCAAGCCACCTTATTTGCGTTAAGGGAACTAATT
TTCGTTGTTTTCGTGGGTTTTCGGCAAAACTGCGAAAGTTAGAAGCCGCA
AATTAAATATTTGGCCATTTTGCATAAAAAAAAATTGAAAAATTCCTTAA
AAAAATGAAAGAAATGTGTCCAAAATAGGGCGCCCCGTGAGAATTTATTC
CAGCGAAATGTGATTTTTTTCGATATTTTTTTTCAACCGTGAAAATTAGC
GCCCGCAAAAAATAAGTTCTCTCAAGGTAGGTTGAATATATGATTTGATC
TTTTGAATTTCAGCACACAAGCATCAACAAATCCATCAACGACGAATAAC
AGCGGTGGCGGTGGAAATTGGGTCACTTTTTAAATTCAGATGAGTAGAAT
TGTAGTGTTGTTTCCAATGGTATCTTTATTTATTTTGAATGAATTTGAGA
GAAATTTCGTTATTAGTTGGTTATTTGCGATTGATTATTTTTCAAATACC
ATGGAATGATGGAATACTCACAAAAAGGAAATCAATGATAATGAATTAAA
TTGAATATTTTTAATTGGTAATTTATGGACTTGCAACGAATGAAGTGTTT
AGGTTTTGACTACGGCGTGTCTGGTCAAAATTGTGATAAATGCGCCTCTA
ATGTGTAACACAAAAAAATAATTAATAAAACTGAAAATTCGTAAAACCTA
AAGTTTTTCTGTGAAAGTTATTCATTTGTCAAATTTTTGAATAAGGTGCA
ATACACTGCCATGATTAACGCACTAGATACGAAAGGTGATTTTTTTGAAA
ATTGCTGGGCTTGAAATAACGGTAAGACATTGGATATTGTCCGACCCAAA
ATGCTCCTTGTCCGACCCAAATTGCTCCTTGTCCGACCCAAAAATCATAA
TTTTCAAACTAAAGAAAAAACTCTGATCGGACATTTTGTCCGACCGACGA
AATCGTTATTTCAATCCTTGAAATTGAGTTGCAGTTTTTTAAAAATTAAT
TATAATTTGTTTCCTTCCTAATTTTTAATAGCAAACAACTCAATAATTAC
ATAAAGTGCATCCATTAAAATGAAATAGAATTTGAAATATAGTAAAACCC
TTGAAATTTTTTTAACGAGATTATATTGGTTTTTATTAAGGCAAATGTGA
AAAATTGGTCGTTGTATTCAAAATTATGAAGACTTTTTCTTTAAAATGAA
TCCTTTTAATCATTTGGTATGGACGCACTGTTTAATTTGTAGATATTACT
ANTATTGGTTTTTATTAAGACAAATGTGAAACATTGGTCGTGGTATTTTA
AATTATAAGGTCTTTTTCTTTAAAATGAATCCTTTTAATCATTTGGTATG
GACGCACTGTTCAATTTGTAGATATTACTGCGAGTTACCGTTTATGTTTG
TATTTTTGGCTTTTCTTTTTTTAGCCAGAAGGGAGTATAGTTATTAATTT
TGATCAATTCTAATGAATTAAATTTGGCATAAATATCATCTAGTTTTGTC
TTGAAGATTGTATTTGTCTTAGGGAAAAACATTTCGTTTGTAGATTTTTT
GCGCTATAAGCGAATTTAGCTCTATTTTTTTCTTTATTATCTTTTTTATG
TTTCTTAATTTTTGTATAGTAGAATAATAATATGAGACTTTTCCCTAAAT
TATGCTGCGCCTTATGTACTTTCATTTAAAACTCTTTCCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036876XLOC_036876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058539-exon-scaffold_311-1575043694:655975..656682TCONS_00058539-exon-scaffold_311-1575043694:655975..656682Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:649562..649662TCONS_00058539-exon-scaffold_311-1575043694:649562..649662Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:648922..649026TCONS_00058539-exon-scaffold_311-1575043694:648922..649026Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:648311..648392TCONS_00058539-exon-scaffold_311-1575043694:648311..648392Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:647853..647955TCONS_00058539-exon-scaffold_311-1575043694:647853..647955Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:647631..647673TCONS_00058539-exon-scaffold_311-1575043694:647631..647673Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:646986..647205TCONS_00058539-exon-scaffold_311-1575043694:646986..647205Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1575043694:645041..646419TCONS_00058539-exon-scaffold_311-1575043694:645041..646419Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:655975..656682TCONS_00058539-exon-scaffold_311-1510915933:655975..656682Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:649562..649662TCONS_00058539-exon-scaffold_311-1510915933:649562..649662Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:648922..649026TCONS_00058539-exon-scaffold_311-1510915933:648922..649026Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:648311..648392TCONS_00058539-exon-scaffold_311-1510915933:648311..648392Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:647853..647955TCONS_00058539-exon-scaffold_311-1510915933:647853..647955Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:647631..647673TCONS_00058539-exon-scaffold_311-1510915933:647631..647673Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:646986..647205TCONS_00058539-exon-scaffold_311-1510915933:646986..647205Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1510915933:645041..646419TCONS_00058539-exon-scaffold_311-1510915933:645041..646419Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:655975..656682TCONS_00058539-exon-scaffold_311-1491911889:655975..656682Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:649562..649662TCONS_00058539-exon-scaffold_311-1491911889:649562..649662Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:648922..649026TCONS_00058539-exon-scaffold_311-1491911889:648922..649026Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:648311..648392TCONS_00058539-exon-scaffold_311-1491911889:648311..648392Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:647853..647955TCONS_00058539-exon-scaffold_311-1491911889:647853..647955Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:647631..647673TCONS_00058539-exon-scaffold_311-1491911889:647631..647673Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:646986..647205TCONS_00058539-exon-scaffold_311-1491911889:646986..647205Clytia hemisphaericaexon
TCONS_00058539-exon-scaffold_311-1491911889:645041..646419TCONS_00058539-exon-scaffold_311-1491911889:645041..646419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:645041..656682 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.49481	6.56909	2.94284	1.56937	0.425816	0.63952	1.95876	1.77055	1.89961	2.84181	1.60869	2.97867	3.84599	2.76379	2.02767	2.39482	2.21577	2.60626	1.66598	2.07865	0.608406	1.61757	5.35358	2.46081	1.38672	1.53787	0.856402	1.24169	1.11487	2.89425
Blast
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BLAST of TCONS_00058539 vs. Swiss-Prot (Human)
Match: NECP1 (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 6.007e-69
Identity = 113/189 (59.79%), Postives = 142/189 (75.13%), Query Frame = 2 
Query:  629 DYERILCVKNEVFMYKIPPRNSARGYRAADWKLEQPDWTVRMRIVEMNGRCILNFEDKMSGQLFAKAPIDEYPGPTVEAVSDSSRYFVIKIQEDGGRHAFIGMGFSDRGDSFDFNVSLQDHFKREKLEDEISKE--EKKPQKHVDMSFKEGQTIKI---NFGNKSGQDSRPKPKAQGGNIGFLPPPPGG 1180
            +YE +LCVK +V +Y+IPPR S RGYRA+DWKL+QPDWT R+RI        +  EDK+SG+LFA+AP+++YPG  VE V+DSSRYFVI+IQ+  GR AFIG+GF+DRGD+FDFNVSLQDHFK  K E EISKE  E   +  +D+ FKEGQTIK+   N  NK G  S+P+  A+GG +  LPPPPGG
Sbjct:    6 EYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPR-TARGGGLSLLPPPPGG 193
The following BLAST results are available for this feature:
BLAST of TCONS_00058539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NECP16.007e-6959.79Adaptin ear-binding coat-associated protein 1 OS=H... [more]
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