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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058526 ID=TCONS_00058526|Name=TCONS_00058526|organism=Clytia hemisphaerica|type=transcript|length=3228bpRun BLAST on NCBI protein sequence of TCONS_00058526-protein >TCONS_00058526-protein ID=TCONS_00058526-protein|Name=TCONS_00058526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp MAENVIKQQIPSLKNETKEENDKEFELTAEMMIDEEDYEGTIDEEEDMDDRun BLAST on NCBI transcript from alignment at scaffold_311:368060..398050- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058526 ID=TCONS_00058526|Name=TCONS_00058526|organism=Clytia hemisphaerica|type=transcript|length=29991bp|location=Sequence derived from alignment at scaffold_311:368060..398050- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:368060..398050- >TCONS_00058526 ID=TCONS_00058526|Name=TCONS_00058526|organism=Clytia hemisphaerica|type=CDS|length=14751bp|location=Sequence derived from alignment at scaffold_311:368060..398050- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058526 vs. Swiss-Prot (Human)
Match: MIER1 (Mesoderm induction early response protein 1 OS=Homo sapiens GN=MIER1 PE=1 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 1.884e-49 Identity = 140/385 (36.36%), Postives = 218/385 (56.62%), Query Frame = 1
Query: 160 MAENVIKQQIPSLKNETKEENDKEFELTAEMMIXXXXXXXXXXXXXXXXXXXXXXXXLADLQKEGDMPIEQLLAMYYQNGDXXXXXXXXXXXXXVKTEQSDEGTAIENTNNGDVGENQ------MNGNIDES----DDPFQN------QRITRGLAALNSQYFXXXXXXXXXXQPTDP--PIDDWKKEIQIGDNYQAEVDEGLTVYSKGEKTLDAGDKLLWTPSVISAEKLTSYLDLVYKLS--EFGSQ-----RSDRDDEQALFTLLQTR-DVSAALKK-RQEQDRQPPDVSLWSEEECQNFEQGLRVFGKDFRLIQKNKVQTRTVGEIVQFYYLWKKTERHDAFVTQTKLGRRKYTL-PGIADMMGRFMEESDPLFTNQPISP 1230
MAE ++ P + +D EF+ +A+M++ + D E T++EEE M+ E + E+ DL +EGDMPI +LL++Y G E + + E D+ A + N+G GEN+ +G DE+ DDP Q+ Q I R +YFD + +E+ + + P +DWKKEI +G +QAE+ G+ Y + EK + D+LLW P + +K+ +L + + E G + +D+EQAL+ L++ D AL++ R ++S+W+EEEC+NFEQGL+ +GKDF LIQ NKV+TR+VGE V FYY+WKK+ER+D F QT+ G++KY L PG+ D M R ++ES+ +++ SP
Sbjct: 1 MAEPSVESSSPG---GSATSDDHEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGY-GSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIR---PRRCKYFDTNSEVEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSP 378 The following BLAST results are available for this feature:
BLAST of TCONS_00058526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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