TCONS_00058520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058520
Unique NameTCONS_00058520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058520 ID=TCONS_00058520|Name=TCONS_00058520|organism=Clytia hemisphaerica|type=transcript|length=277bp
AAAGATAGAAGCAGAAACTGTACCGCCAAAGATTGCCCAACAAGGCAATA
ACATCGACGGATACGACCGTTCAAAGGCTAAGGATAAAGAGGGCGGTCTA
TCGGGCGGCATCATTACCATTTTATCACTATTGGGCGTGGTTTTGATCAC
CGCCATTGGCGTTCTGTTGAAAATGAGGTGGTGTCCTTCAATATCTGGAG
AGGCGGATGAGAAAAACAATGGCGGTACTTCTTGCGAACGCCCATCGACA
GTCGTTGGATGTGGTTGTTGTTGTaag
Run BLAST on NCBI

transcript from alignment at scaffold_311:305116..310876-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058520 ID=TCONS_00058520|Name=TCONS_00058520|organism=Clytia hemisphaerica|type=transcript|length=5761bp|location=Sequence derived from alignment at scaffold_311:305116..310876- (Clytia hemisphaerica)
AAAGATAGAAGCAGAAACTGTACCGCCAAAGATTGCCCGTAAGTACTTAT
TTTCGTTTTTTAATTTCAATGCACGGGTTGCAAAATTATATCAATGCAGT
CAAAACATGTGATTACTCAAAAAAGTTCACGTGATTTTATTCCCATGTTA
CTTGCTTTACAACTTACAGCTGATAACTTTGTCAGTGTCAATAAATTTAA
ACCAATCCAGAAATAAATGTCATGTAACAAGCACATAAAAAATTTCGAGT
AAAAGCGTGATTTGTCTTCAGACTTTCATTTTGCAACCTGTGATTTATGG
ATCTGTCTTAAAACGGCTAGCCTGGAGATCCATGCTATGATTTCTTATAT
TAAAAGCAAATTAATGCTTTGGGCTATGAGTTTGGTTACACTTCCTTAGA
AAAAAAAGAAAACCTTAGATACGTTCAAATGTCAGTTGATAACACAGCCA
ATCAAATTTTGTTATTCTTTCGCTGGTTACACTTCCTTAGAAAAAAAACA
TAACTTCCCAAACTTGTTTATCTTAGTAAGTAAGTCCAAAATATGCCTCA
CAGGTCGAACCCGTCTTGTCCTAACAAAGCAGGTAATCTCTCTTGTCTAT
AAAAAGGGACGAGCAAGATAGTCCATAGGCCGTAGCAAAAACGTAGAACA
TTTAGCTGCAGTACGGAAAGTTTAAAGGTCAGCAAATGAAGAAAAGTGGT
TGCAAAAATGAGGAGTCTATGGAGAACAATAACACCATCCCAGCTGGCAC
ACAACGTTGTTTCAACGTTTATCTAACGTTCATAACGTCCATATAACGTT
AGATGGACGTTGAAACAACGTTGTGTGCCAGCTGGGATTCCTCGGACCTA
TGGTAGACAGCTATAGGGAAGGAAGTCTTCATTTTGTCCTCGAATATAGT
CATAATATAAAGTTATTACTCACCAGAAAGTTTGAAAGCCATTATTTGGT
TTCTACCTATCGTAAGCTTCACAAACTAACGAATACTAAAGACAAAGGTT
TTCTCAACTAATATTTTTTTACATTACGTACCCAAGAAGGAATTTGCACT
TCTTTTTAAAATAGCTTTAAGTATAAATTATCATAACAGCTCCGCCTGCA
AGAATGCTAATTAGTCTTTTTTCTGGGAGACTGTTAACGTTTTTTCTGGA
AATTACCCATAACAAGACCTTATGATGATTTTGTGAATTTTCTGGTTTTG
AAAAATCGAATTAGTTGAGAAGAAACTTTTCCAATCGAGAAGAGTCGAGT
TAACCGAGGAGAAGTCAATCAATCGAAGGATCGAATCAACTAAGACGAAT
TGGATCTATTAAGTATTTAAGGGCTCTGACCATAGTAAAAAATCAGTATT
TCAGTTTAATGCCGATATTTTGGCTGAAGGTTCCTTTTAGGAACTAGCAA
AAAACTGCGTTTACAGAATTGTGAAATATTAATTCCTTCGTCAGATATTT
CGTATCAAACTTTGTGTATCTAAAACCTCATCTTTTAAAATCAAAACTCT
CTATAAAACTATAAAGTATGCATCAAGCTAATTACGGCAGAATAATTACA
AGCCAAGCCAAGCCAAGACGCAAAATGTTCTTGTAAATAGCTCATCGCTT
ACACATTGTATTTCGAAGTTAAACAGTGTTCACCATTAATAAAAGCAAAT
TCCCATAATAGCAATGAATCATTTATTACTTTCATTATCATAAAATTAAT
TAATTTATGCAATGATGTCATTAAGAATAATCATAGTTTAAATCTAAAAT
TGTTAAAACCTTTTGCACAATTGAAGAATCATGTCATTTATTTTTAAATA
GCTAAGTTTCAATGGGCAATTAACCTTTTTGTTTCAAAATTTCTTTACAC
TGTCCGCAAAGAATTGAACTATTTTAAATTTTGCGGAAAATTTTTCTAAA
AAGATGTGTCAAAAGTTATGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCAA
AATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTGAAATACGCTTC
CTCGCAAAAGTCTTCATTTTCTTCTTCATCAAATTTTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTATGAAAA
ATTCACTATGGTCAGAGCCCTTAAGGAGTGATGGCCAAGTGGTCAAAGGC
GTCAGCGTCTTAAAAACCAGGGGTTCGCGGTTCCAATCCCCGCTCCTTCC
AATGTTCTGTTCAGTTCAAAGATAGCCGAGCCGGCTGACCGTGGTCCCCG
TGAAAACAATCGAAAGGCCTGTCTAAAAGTCCTAGATTACTGGGCTATCC
ACGTAAAATATCGATTCTATCTATCAAGAAAAATCGAATCAGATCGGGCA
AATAAGATTCAAGAAAGTTATGGTAAAAGATACGAATGAAATGACACGGA
TTAAAATCAATGTACATAACTTATAAAAGAGTGTTTAAAACAGAAATGTC
CCGAAAAGAAGGAATATTTGGTGAATAGTGGTGACAAAGAAAATTAAGCG
AATCAATGATGTCACAAAAGATTTGAAAGGTACAGTTGCTCATACTAAAC
ATTTATTAAAATTTAAATTATTTTAATTCCTTAACAATTCCTTTAAAATA
TAAACAAGGTGCAAGAGGATTTTTGGGTACAAAGATGTCGAACCAAAATA
GATTAAGAATTAATTGATGGAAAAACCAGCTTAGGGATTAATAGTATTTG
CGCAGGTTGGCTGGCTAGGCTTGTTCTCAAATCTAGAGATTCAGAGAGTA
CCAGTTTTTGTCGAGGTTTACTTTTAGGATCATAGAAAGCTTTTTCGTAC
CACATATCTCAAACAATCTTATCAACTCTTCAATCAAACATTAGTTGTCT
TTTGATTGTTGATTGAACATTTAATATTTTTCTCTATCAGAACAAAGTAG
CAACAAGACGGGTAACAGCACAGCTACGCCCTTCGCTAAATCAGCTGGCG
GAATCACCCTCTTCAGTTTATTGGGCGTTAGTGGTTTCTCAGGCTTATTA
CTGGTTGCAAAGAAACTACTCATGGGCGAAGGACTTGGTCTGAACTGTGG
TGAGGGGATTGAGACTACCCTTGAGTGTGGCAAGTGTTGTTCGTGTTGTT
GTGGCGACAAGGAGGAGGAGGAGGAGGAGCATGGCGAAAAAATTCGATTG
ACTGCAACCAATGGAAAAAATGATGACACAGAAACAAGCCACAAAGACAG
CTAGAACCGCTTGTGGTTCATTTGGGGAATTTCCCAGGTGTCAAAAAGGC
TTTTCTTGGCACTATTGATAAATTTTTGAAAAGTTTACAGACCTTTTGTC
CGAGATTGTAGTCGTGGAATGTCTTTTTTTACTTGACCACTTCCAAACCT
TTTTGAACAGAAAAAGATTGACCACATGAAAAAAATATTTCAGGCTGACG
TATATGCTTGTGTTATGCTTAGGAAATCTGTAAATCTGAGCCTTCGAGAT
GCCTTGGAGTTTTTATAAGATACTTCACTAATTGGTCATTTAAAGTGATA
GAGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTACATCTT
AACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCG
AGCCTTCATATGCTTATTATAAAAAAAATATGTATTTGGTAAGTCTATGA
AAATGGAAAGAAAGTTTATAACTACGCTTAATTACTACCCGCTTTGTAAA
AGAGATTTTCTTTGTTTTTGTTTCCAAAAAATCCATGGAAACTTCGTTAG
CGTTACTCTTAGGTTCCAAATAAACGGCCCCCTGCTTGTTAATTTTTCCC
CCGGACGTTATTAGGACCCCCCGTTTATTAATTTTTGAAAAAATTCCCAG
CTACCAAAAGGAAAGTTTCTTGTTTTACTCTAAAAAGCCTATATTTAGTC
TATTTTAACCCTTTTTTTGGTTTTTAAAAGTCCATTTTCCAACCCCCCGG
CAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCCCCGTTTATTGATTTTAAAGAAAATTGTTAGCTGTCAAAGAAAAG
GTCCCTTATTTTGCTCTAAATAGCCTGATTTTAGCCTATATTTACATTAT
TTTTGGGTTTCCAGAAGTACAATTTCCAACCCTCCCCCGGCAATTAGGTC
CCCCCTGTTTATTCGAACCCCCCCCCGTTTATTTGGCACCTAGGAGTACA
GAGAGTATTTTATAATACATTCCACCTGAGGGGATTTATACTTTAGTTTG
AATTATATAAAGATTAGAATAGTAGAGGTTTGAATATGTATGAGAGAGTT
GACTGTACTGGTTCTATTCCCTTCAACGTTCAAGCATCTTGGGGGGGGGG
GCTCCCCCTCCCAAAAAAAACTTTTTTGATAACTATTTATCCAATACTTG
AAATTTGGCAAGTGTAAGTGCACTCAATATGAATTGGCATCTTTGGTAAA
ATTTCGACATCATCGATGACGTCATCGCCAACTGAAGACGTGTATTTTAC
AGACCGTTATAAGGCTCTTTTATTTGACAAATCAGCCTTCAGGTTAATCA
GTCAAAGTTTACATTCTGGTCTATAAAATATCAACCAGACAGGTGGCCGA
ACCAACATTTTGCAAATCATCTTCAAATTATCTATATCTACCACTGGTCA
AAATTTCGAGAGCACTTGTCCTTGTTAATCTTGAGATTTTAAGCCCCCCC
CGCCTAAGATACTTCCATTAACAAAAAAATAGGAAGCTCGAAGGGTTAAC
AACGTGTATAGAATTTTCTCCTAAACTAATTTCACACCAATCCAATCAGG
CATTGATCAAATTTCTTTCTAGAACAAGGCAATAACATCGACGGATACGA
CCGTTCAAAGGCTAAGGATAAAGAGGGCGGTCTATCGGGCGGCATCATTA
CCATTTTATCACTATTGGGCGTGGTTTTGATCACCGCCATTGGCGTTCTG
TTGAAAATGAGGTGGTGTCCTTCAATATCTGGAGAGGCGGATGAGAAAAA
CAATGGCGGTACTTCTTGCGAACGCCCATCGACAGTCGTTGGATGTGGTT
GTTGTTGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036867XLOC_036867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058520-exon-scaffold_311-1575043694:310839..310876TCONS_00058520-exon-scaffold_311-1575043694:310839..310876Clytia hemisphaericaexon
TCONS_00058520-exon-scaffold_311-1575043694:305116..305354TCONS_00058520-exon-scaffold_311-1575043694:305116..305354Clytia hemisphaericaexon
TCONS_00058520-exon-scaffold_311-1510915933:310839..310876TCONS_00058520-exon-scaffold_311-1510915933:310839..310876Clytia hemisphaericaexon
TCONS_00058520-exon-scaffold_311-1510915933:305116..305354TCONS_00058520-exon-scaffold_311-1510915933:305116..305354Clytia hemisphaericaexon
TCONS_00058520-exon-scaffold_311-1491911889:310839..310876TCONS_00058520-exon-scaffold_311-1491911889:310839..310876Clytia hemisphaericaexon
TCONS_00058520-exon-scaffold_311-1491911889:305116..305354TCONS_00058520-exon-scaffold_311-1491911889:305116..305354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:305116..310876 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.619189	0.867018	0.536971	0	1.71307	0	1.42125	1.46058	3.44834	0	1.58332	0.546861	0.572251	0	0.727828	0	0	1.65699	0.492943	4.9378	1.50564	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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